vOTU vOTU-034828

vOTU: vOTU-034828

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-034828
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-00111 → vOTU-034828
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1441373
Biosample ID	N/A
Genome length (bp)	29,249 bps
CheckV completeness	83.13% (Medium-quality)
CDS count	39
CDS density	92.79%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1199	Host agreement	89.91
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	29	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 83.13)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1441373_1	phrog_8	45.1	0.0000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-1441373_1	UniRef90_UPI0015F3DE1D	286.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1441373_1	663278.Ethha_2423	73.2	0.0000000000000185	sequence-specific DNA binding	N/A
Pfam	UHGV-1441373_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1441373_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1441373_1	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1441373_2	UniRef90_UPI000E51362F	132.0	4.37e-39	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1441373_2	411461.DORFOR_00030	50.8	0.000000123	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1441373_2	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1441373_2	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1441373_4	phrog_585	113.6	1.2e-33	N/A	unknown function
UniRef90	UHGV-1441373_4	UniRef90_UPI00051C896C	145.0	2.30934e-42	N/A	N/A
eggNOG-mapper	UHGV-1441373_4	1033744.CAEL01000029_gene1306	131.0	2.89e-37	N/A	N/A
Pfam	UHGV-1441373_4	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-1441373_4	PF10711,MF_01819,TIGR03433,COG3432	N/A	N/A	N/A	N/A
KOfam	UHGV-1441373_6	K00390	94.3	1.2e-27	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1441373_6	phrog_424	120.8	9.4e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1441373_6	UniRef90_UPI001C034617	569.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1441373_6	1408437.JNJN01000032_gene2312	332.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1441373_6	BrxP_00001	80.7	1.1e-23	BrxP	BREX
Pfam	UHGV-1441373_6	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1441373_6	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1441373_6	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1441373_7	phrog_6058	42.0	0.0000000000089	N/A	unknown function
structural_annotation	UHGV-1441373_7	NF033787	N/A	N/A	N/A	N/A
KOfam	UHGV-1441373_9	K03497	158.0	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1441373_9	phrog_6218	265.0	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1441373_9	UniRef90_UPI000E47CAB6	735.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-1441373_9	394503.Ccel_3306	248.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-1441373_9	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-1441373_9	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-1441373_9	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
structural_annotation	UHGV-1441373_9	PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-1441373_10	K03427	161.2	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-1441373_10	phrog_6380	365.4	0	DNA methyltransferase	other
UniRef90	UHGV-1441373_10	UniRef90_UPI001B3C6DA9	662.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-1441373_10	1444306.JFZC01000034_gene2643	318.0	0	type I restriction-modification system	N/A
PADLOC	UHGV-1441373_10	MTase_I_00005	102.8	5.4e-31	Type I methyltransferase	RM
Pfam	UHGV-1441373_10	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-1441373_10	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-1441373_10	PF02384,MF_01872,TIGR00497,COG0286	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1441373_12	1519439.JPJG01000077_gene922	54.7	0.000000154	N/A	N/A
PHROG	UHGV-1441373_14	phrog_824	145.2	1.69557e-43	N/A	unknown function
UniRef90	UHGV-1441373_14	UniRef90_A0A3D3D6C6	249.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1441373_14	397288.C806_00096	158.0	0	VRR_NUC	N/A
Pfam	UHGV-1441373_14	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1441373_14	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-1441373_17	phrog_3584	149.5	1.96182e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1441373_17	1235800.C819_00515	71.2	0.00000000000707	N/A	N/A
structural_annotation	UHGV-1441373_17	PF21578,NF041486	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1441373_18	394503.Ccel_3053	50.4	0.00000512	N/A	N/A
structural_annotation	UHGV-1441373_18	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1441373_19	phrog_119	67.4	1.8e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1441373_19	UniRef90_A0A412ULY9	215.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1441373_19	1158607.UAU_01026	100.0	4.13e-26	HNH endonuclease	N/A
Pfam	UHGV-1441373_19	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1441373_19	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1441373_20	phrog_5110	83.0	2.1e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1441373_20	UniRef90_A0A1M5U1D5	113.0	1.2e-30	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1441373_20	1211817.CCAT010000053_gene2128	100.0	3.14e-26	N/A	N/A
Pfam	UHGV-1441373_20	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1441373_20	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1441373_21	phrog_9	303.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1441373_21	UniRef90_A0A412UM03	1016.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1441373_21	86416.Clopa_0337	635.0	0	Phage Terminase	N/A
Pfam	UHGV-1441373_21	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1441373_21	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1441373_21	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1441373_21	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
KOfam	UHGV-1441373_22	K03427	214.7	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-1441373_22	phrog_6380	395.4	0	DNA methyltransferase	other
UniRef90	UHGV-1441373_22	UniRef90_A0A356CYE0	806.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-1441373_22	1201292.DR75_1654	334.0	0	type I restriction-modification system	N/A
PADLOC	UHGV-1441373_22	MTase_I_00005	238.3	0	Type I methyltransferase	RM
Pfam	UHGV-1441373_22	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
Pfam	UHGV-1441373_22	PF01420	N/A	N/A	Type I restriction modification DNA specificity domain	Methylase_S
COG	UHGV-1441373_22	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-1441373_22	PF02384,PF01420,MF_01872,TIGR00497,COG0286,COG0732	N/A	N/A	N/A	N/A
PHROG	UHGV-1441373_23	phrog_12	93.3	1.8e-27	portal protein	head and packaging
UniRef90	UHGV-1441373_23	UniRef90_A0A412ULV9	753.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1441373_23	1415774.U728_1254	263.0	0	Phage portal protein	N/A
Pfam	UHGV-1441373_23	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1441373_23	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1441373_23	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1441373_23	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1441373_24	K01358	139.3	3.20001e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1441373_24	phrog_94	205.9	0	head maturation protease	head and packaging
UniRef90	UHGV-1441373_24	UniRef90_A0A412ULU1	451.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1441373_24	1211817.CCAT010000053_gene2131	175.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1441373_24	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1441373_24	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1441373_24	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1441373_25	phrog_10	127.1	1.4e-37	major head protein	head and packaging
UniRef90	UHGV-1441373_25	UniRef90_A0A412ULW9	741.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1441373_25	1211817.CCAT010000053_gene2132	321.0	0	Phage capsid family	N/A
Pfam	UHGV-1441373_25	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1441373_25	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1441373_25	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1441373_25	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1441373_26	phrog_749	56.5	3.7e-16	N/A	unknown function
UniRef90	UHGV-1441373_26	UniRef90_A0A1G5CMX8	107.0	4.3e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1441373_26	1211817.CCAT010000053_gene2133	58.5	0.000000000825	N/A	N/A
PHROG	UHGV-1441373_27	phrog_19734	70.0	2.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-1441373_27	86416.Clopa_0343	60.1	0.000000000446	N/A	N/A
structural_annotation	UHGV-1441373_27	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1441373_28	272623.L59277	51.6	0.0000006	N/A	N/A
structural_annotation	UHGV-1441373_28	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-1441373_29	UniRef90_UPI000E5564A4	268.0	0	HK97 gp10 family phage protein	N/A
Pfam	UHGV-1441373_29	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1441373_29	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1441373_30	phrog_88	74.1	1.6e-21	major tail protein	tail
eggNOG-mapper	UHGV-1441373_30	1321782.HMPREF1986_01362	65.1	0.000000000192	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1441373_30	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1441373_30	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1441373_31	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-1441373_32	K20478	58.0	2.1e-17	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-1441373_32	phrog_5218	269.5	0	N/A	unknown function
UniRef90	UHGV-1441373_32	UniRef90_UPI000E474EFE	1483.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1441373_32	999413.HMPREF1094_02001	272.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-1441373_32	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1441373_32	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1441373_32	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1441373_33	phrog_33	77.5	2.7e-22	distal tail protein Dit	tail
UniRef90	UHGV-1441373_33	UniRef90_A0A1G5CPA2	134.0	1.2e-34	Phage-related protein	N/A
eggNOG-mapper	UHGV-1441373_33	1160721.RBI_I01575	89.4	1.85e-18	Phage tail protein	N/A
COG	UHGV-1441373_33	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1441373_33	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1441373_34	phrog_1067	99.3	8.8e-30	minor head protein	head and packaging
UniRef90	UHGV-1441373_34	UniRef90_A0A348ZBV6	152.0	4.88e-39	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1441373_34	1462527.CCDM010000003_gene3730	63.2	0.0000000863	gp58-like protein	N/A
Pfam	UHGV-1441373_34	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1441373_34	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1441373_34	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1441373_34	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-1441373_35	UniRef90_A0A374N9Y2	195.0	0	N/A	N/A
structural_annotation	UHGV-1441373_35	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
UniRef90	UHGV-1441373_37	UniRef90_A0A374MYZ3	179.0	0	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-1441373_37	1007096.BAGW01000032_gene1580	87.4	2.12e-21	N/A	N/A
PHROG	UHGV-1441373_38	phrog_881	87.2	8.3e-26	holin	lysis
UniRef90	UHGV-1441373_38	UniRef90_A0A4Q7P349	103.0	1.59e-27	Dp-1 family holin	N/A
eggNOG-mapper	UHGV-1441373_38	742740.HMPREF9474_02251	106.0	1.74e-29	Putative phage holin Dp-1	N/A
Pfam	UHGV-1441373_38	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1441373_38	PF16938	N/A	N/A	N/A	N/A
KOfam	UHGV-1441373_39	K01448	49.4	0.000000000000052	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1441373_39	phrog_435	74.2	2e-21	endolysin	lysis
UniRef90	UHGV-1441373_39	UniRef90_A0A413QH71	410.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-1441373_39	1384066.JAGT01000001_gene130	75.1	0.000000000000756	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1441373_39	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1441373_39	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1441373	Yes	29,249	40	83	1
UHGV-1424836	No	21,891	40	62	1