vOTU vOTU-035018

vOTU: vOTU-035018

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-035018
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-00313 → vGENUS-00344 → vOTU-035018
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1436645
Biosample ID	SAMN02333926
Genome length (bp)	29,250 bps
CheckV completeness	88.87% (Medium-quality)
CDS count	39
CDS density	94.96%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis	Total connections	75	Host agreement	84
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	96	Host agreement	98.96

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 88.87)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1436645_1	phrog_10280	53.9	0.0000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-1436645_1	742738.HMPREF9460_02068	62.8	0.00000000174	N/A	N/A
COG	UHGV-1436645_2	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1436645_2	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1436645_3	phrog_72	52.6	0.0000000000000055	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1436645_3	411471.SUBVAR_05829	205.0	0	N/A	N/A
Pfam	UHGV-1436645_3	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-1436645_3	PF05772,NF007281	N/A	N/A	N/A	N/A
COG	UHGV-1436645_4	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-1436645_4	PF04606,NF007241	N/A	N/A	N/A	N/A
PHROG	UHGV-1436645_5	phrog_7566	75.1	5e-22	N/A	unknown function
eggNOG-mapper	UHGV-1436645_5	411471.SUBVAR_05830	117.0	7.18e-33	N/A	N/A
PHROG	UHGV-1436645_7	phrog_997	111.9	3.2e-33	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1436645_7	UniRef90_A0A2Z3KP46	76.3	0.00000000000000305	Replication terminator protein	N/A
eggNOG-mapper	UHGV-1436645_7	411471.SUBVAR_05832	157.0	0	N/A	N/A
PHROG	UHGV-1436645_8	phrog_1029	205.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1436645_8	411471.SUBVAR_05833	233.0	0	N/A	N/A
structural_annotation	UHGV-1436645_8	PF10065,COG5532	N/A	N/A	N/A	N/A
KOfam	UHGV-1436645_9	K03111	129.4	3.3e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1436645_9	phrog_44	133.3	1.3e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1436645_9	UniRef90_A0A1Q6T3F1	288.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1436645_9	411471.SUBVAR_04646	184.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1436645_9	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1436645_9	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1436645_9	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1436645_9	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1436645_9	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1436645_10	phrog_678	76.5	3.5e-22	replication initiation O-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1436645_10	UniRef90_A0A6N8H2D2	380.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1436645_10	411471.SUBVAR_05835	152.0	1.96042e-42	Helix-turn-helix domain	N/A
Pfam	UHGV-1436645_10	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-1436645_10	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1436645_10	PF13730,MF_01909,TIGR04176,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-1436645_11	K02314	231.0	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1436645_11	phrog_19	216.7	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1436645_11	UniRef90_A0A6N8GZX5	807.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-1436645_11	411471.SUBVAR_05838	421.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1436645_11	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1436645_11	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1436645_11	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1436645_11	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-1436645_12	K03496	221.3	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1436645_12	phrog_164	169.3	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1436645_12	UniRef90_A0A6N8H6J9	388.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-1436645_12	411471.SUBVAR_05839	280.0	0	AAA domain	N/A
Pfam	UHGV-1436645_12	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1436645_12	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1436645_12	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-1436645_13	K03497	82.4	6.8e-24	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1436645_13	phrog_4715	126.8	5e-38	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1436645_13	UniRef90_A0A1Q6T350	830.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1436645_13	411471.SUBVAR_05842	374.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-1436645_13	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1436645_13	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1436645_13	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-1436645_15	phrog_36	66.9	2.7e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1436645_15	UniRef90_A0A6N8H4L3	167.0	0	Sigma70_r4 domain-containing protein	N/A
Pfam	UHGV-1436645_15	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-1436645_15	PF04545,TIGR02984	N/A	N/A	N/A	N/A
PHROG	UHGV-1436645_16	phrog_119	66.9	2.3e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1436645_16	UniRef90_UPI00195B555F	181.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1436645_16	543734.LCABL_11060	104.0	9.56e-28	HNH endonuclease	N/A
Pfam	UHGV-1436645_16	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1436645_16	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1436645_17	phrog_1066	87.0	1.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-1436645_17	1094508.Tsac_2428	97.4	1.04e-24	N/A	N/A
structural_annotation	UHGV-1436645_17	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1436645_18	phrog_9	331.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1436645_18	UniRef90_A0A8J6TY49	891.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1436645_18	411471.SUBVAR_05848	789.0	0	large subunit	N/A
Pfam	UHGV-1436645_18	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1436645_18	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1436645_18	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1436645_18	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1436645_19	phrog_12	117.4	7.6e-35	portal protein	head and packaging
UniRef90	UHGV-1436645_19	UniRef90_UPI00195C5E58	650.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1436645_19	742740.HMPREF9474_04306	591.0	0	Phage portal protein	N/A
Pfam	UHGV-1436645_19	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1436645_19	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1436645_19	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1436645_20	K06904	120.2	1.8e-35	N/A	N/A
PHROG	UHGV-1436645_20	phrog_80	130.2	1.7e-38	head maturation protease	head and packaging
UniRef90	UHGV-1436645_20	UniRef90_A0A1C5W530	272.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-1436645_20	411471.SUBVAR_05851	251.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-1436645_20	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-1436645_20	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1436645_20	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1436645_21	phrog_10	57.4	1.5e-16	major head protein	head and packaging
UniRef90	UHGV-1436645_21	UniRef90_A0A1C5W5F9	448.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-1436645_21	742740.HMPREF9474_04304	396.0	0	Phage capsid family	N/A
Pfam	UHGV-1436645_21	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1436645_21	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1436645_21	PF05065,PF09032,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1436645_22	phrog_5223	72.8	2.4e-21	neck protein	connector
UniRef90	UHGV-1436645_22	UniRef90_UPI00195CBB4A	140.0	1.46996e-41	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1436645_22	411471.SUBVAR_05853	93.6	1.17e-23	N/A	N/A
PHROG	UHGV-1436645_23	phrog_1951	66.4	2.7e-19	head-tail adaptor	connector
UniRef90	UHGV-1436645_23	UniRef90_UPI00195B41A2	162.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-1436645_23	411470.RUMGNA_02070	67.4	0.00000000000036	N/A	N/A
NCBIFam	UHGV-1436645_23	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1436645_23	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1436645_24	phrog_5	44.7	0.0000000000022	tail completion or Neck1 protein	connector
UniRef90	UHGV-1436645_24	UniRef90_UPI000684DFDC	59.7	0.0000000146	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1436645_24	1195236.CTER_5108	79.7	3.88e-17	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-1436645_24	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1436645_24	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1436645_26	phrog_88	44.2	0.0000000000022	major tail protein	tail
structural_annotation	UHGV-1436645_26	PF06488,TIGR01603	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1436645_27	PF12363	N/A	N/A	N/A	N/A
PHROG	UHGV-1436645_28	phrog_8462	128.2	6.4e-39	tail length tape measure protein	tail
UniRef90	UHGV-1436645_28	UniRef90_A0A174XMM8	277.0	0	Tail tape measure protein TP901 core region	N/A
eggNOG-mapper	UHGV-1436645_28	1195236.CTER_5104	289.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1436645_28	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1436645_28	TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1436645_29	phrog_37549	40.2	8.6e-16	virion structural protein	head and packaging
UniRef90	UHGV-1436645_29	UniRef90_A0A3D0W045	224.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-1436645_29	1161901.I1TLF2_9CAUD	78.2	0.00000000000864	N/A	N/A
structural_annotation	UHGV-1436645_29	PF02010,PF06995,MF_04116,NF010681,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1436645_30	phrog_26795	89.9	1.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-1436645_30	742740.HMPREF9474_04294	124.0	1.53e-29	N/A	N/A
structural_annotation	UHGV-1436645_30	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1436645_31	PF18614,MF_00085,NF003082,COG0361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1436645_32	PF16407	N/A	N/A	N/A	N/A
PHROG	UHGV-1436645_33	phrog_5302	171.3	0	tail protein	tail
UniRef90	UHGV-1436645_33	UniRef90_A0A1F8V1G3	140.0	4.52e-32	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1436645_33	411470.RUMGNA_00248	154.0	1.39e-37	Phage tail-collar fibre protein	N/A
COG	UHGV-1436645_33	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
KOfam	UHGV-1436645_34	K00986	82.1	5.5e-24	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-1436645_34	phrog_1423	153.1	1.4013e-45	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1436645_34	UniRef90_UPI0012B5656A	204.0	0	RNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-1436645_34	411468.CLOSCI_01505	151.0	3.26e-39	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-1436645_34	icity0040	54.6	0.0000000000000019	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-1436645_34	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-1436645_34	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-1436645_34	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-1436645_35	phrog_4912	74.3	1.7e-21	tail fiber assembly	tail
UniRef90	UHGV-1436645_35	UniRef90_UPI000B0FF2B9	66.2	0.0000000000357	phage tail assembly chaperone	N/A
eggNOG-mapper	UHGV-1436645_35	666685.R2APBS1_2865	71.2	0.0000000000000388	Phage tail assembly chaperone protein	N/A
Pfam	UHGV-1436645_35	PF16778	N/A	N/A	Phage tail assembly chaperone protein	Phage_tail_APC
structural_annotation	UHGV-1436645_35	PF16778	N/A	N/A	N/A	N/A
KOfam	UHGV-1436645_37	K19304	118.2	6.8e-35	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-1436645_37	phrog_10030	79.6	8.9e-24	tail length tape measure protein	tail
UniRef90	UHGV-1436645_37	UniRef90_A0A6N8H6M3	254.0	0	M23 family metallopeptidase	N/A
eggNOG-mapper	UHGV-1436645_37	264732.Moth_2422	94.4	3.64e-19	G5 domain protein	N/A
Pfam	UHGV-1436645_37	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-1436645_37	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-1436645_37	PF01551,MF_00664,NF040883,COG0739	N/A	N/A	N/A	N/A
PHROG	UHGV-1436645_38	phrog_1863	68.4	4.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-1436645_38	693746.OBV_18260	102.0	1.57e-27	N/A	N/A
PHROG	UHGV-1436645_39	phrog_13256	56.5	2.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-1436645_39	1226322.HMPREF1545_00132	53.5	0.0000000131	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1436645	Yes	29,250	59	89	1
UHGV-1560542	No	11,233	58	34	1