vOTU vOTU-035113

vOTU: vOTU-035113

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-035113
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-00431 → vGENUS-01057 → vOTU-035113
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0004933
Biosample ID	N/A
Genome length (bp)	29,020 bps
CheckV completeness	82.09% (Medium-quality)
CDS count	41
CDS density	94.68%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	324	Host agreement	99.07
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter	Total connections	4	Host agreement	75

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 82.09)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0004933_1	K07273	192.4	0	acm; lysozyme	N/A
PHROG	UHGV-0004933_1	phrog_291	216.7	0	endolysin	lysis
UniRef90	UHGV-0004933_1	UniRef90_A0A374JNX4	634.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0004933_1	521003.COLINT_02363	286.0	0	CW_7 repeat	N/A
Pfam	UHGV-0004933_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0004933_1	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-0004933_1	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0004933_1	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0004933_1	PF01183,PF01476,TIGR02899,COG3757,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0004933_2	phrog_263	80.0	1.8e-23	holin	lysis
UniRef90	UHGV-0004933_2	UniRef90_R6GD40	161.0	0	Holin SPP1 family	N/A
eggNOG-mapper	UHGV-0004933_2	764291.STRUR_2085	82.8	1.75e-19	SPP1 phage holin	N/A
Pfam	UHGV-0004933_2	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0004933_2	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0004933_2	PF04688,TIGR01592	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004933_3	742733.HMPREF9469_01798	59.3	0.00000000021	N/A	N/A
PHROG	UHGV-0004933_6	phrog_17147	266.4	0	N/A	unknown function
UniRef90	UHGV-0004933_6	UniRef90_A0A374JQW7	1234.0	0	N/A	N/A
eggNOG-mapper	UHGV-0004933_6	33035.JPJF01000043_gene1001	234.0	0	N/A	N/A
Pfam	UHGV-0004933_6	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-0004933_6	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0004933_9	phrog_1067	415.1	0	minor head protein	head and packaging
UniRef90	UHGV-0004933_9	UniRef90_UPI00189EFADE	1852.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0004933_9	1160721.RBI_I01574	416.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0004933_9	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0004933_9	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0004933_9	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0004933_9	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0004933_10	phrog_33	81.1	2.3e-23	distal tail protein Dit	tail
UniRef90	UHGV-0004933_10	UniRef90_R6GVG8	174.0	0	Phage putative tail component N-domain protein	N/A
eggNOG-mapper	UHGV-0004933_10	1567011.A0A0A7RWN1_9VIRU	107.0	1.4e-25	Phage tail protein	N/A
Pfam	UHGV-0004933_10	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
structural_annotation	UHGV-0004933_10	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0004933_11	phrog_1272	305.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0004933_11	UniRef90_A0A174XH68	626.0	0	Phage tail tape measure protein, TP901 family	N/A
eggNOG-mapper	UHGV-0004933_11	411468.CLOSCI_00540	593.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0004933_11	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0004933_11	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0004933_11	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004933_12	411468.CLOSCI_00542	140.0	6.63935e-42	N/A	N/A
structural_annotation	UHGV-0004933_12	PF17388	N/A	N/A	N/A	N/A
PHROG	UHGV-0004933_13	phrog_2175	81.1	1.5e-23	protein with Ig domain	other
eggNOG-mapper	UHGV-0004933_13	411468.CLOSCI_00543	199.0	0	N/A	N/A
structural_annotation	UHGV-0004933_13	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004933_14	411468.CLOSCI_00544	138.0	7.55006e-41	N/A	N/A
structural_annotation	UHGV-0004933_14	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0004933_15	phrog_5	40.2	0.000000000083	tail completion or Neck1 protein	connector
UniRef90	UHGV-0004933_15	UniRef90_UPI001C00E12E	126.0	6.49e-35	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0004933_15	457421.CBFG_03712	130.0	2.01e-37	N/A	N/A
structural_annotation	UHGV-0004933_15	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0004933_16	phrog_1951	64.4	1.4e-18	head-tail adaptor	connector
UniRef90	UHGV-0004933_16	UniRef90_UPI00189EBA11	175.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-0004933_16	491915.Aflv_0668	49.3	0.0000043	head-tail adaptor	N/A
NCBIFam	UHGV-0004933_16	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0004933_16	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0004933_16	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0004933_17	phrog_5223	44.9	0.0000000000014	neck protein	connector
UniRef90	UHGV-0004933_17	UniRef90_A0A174XIL0	120.0	1.23e-33	N/A	N/A
eggNOG-mapper	UHGV-0004933_17	411468.CLOSCI_00547	115.0	2.8e-32	N/A	N/A
PHROG	UHGV-0004933_18	phrog_10	128.0	8.4e-38	major head protein	head and packaging
UniRef90	UHGV-0004933_18	UniRef90_A0A374JNW0	761.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0004933_18	411468.CLOSCI_00548	595.0	0	Phage capsid family	N/A
Pfam	UHGV-0004933_18	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0004933_18	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0004933_18	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0004933_19	K01358	142.8	3.09967e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0004933_19	phrog_94	211.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0004933_19	UniRef90_A0A374JQH6	498.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0004933_19	411468.CLOSCI_00549	333.0	0	COG COG0740 Protease subunit of ATP-dependent Clp proteases	N/A
Pfam	UHGV-0004933_19	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0004933_19	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0004933_19	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0004933_20	phrog_12	168.8	0	portal protein	head and packaging
UniRef90	UHGV-0004933_20	UniRef90_A0A374JP76	776.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0004933_20	411468.CLOSCI_00550	619.0	0	Phage portal protein	N/A
Pfam	UHGV-0004933_20	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0004933_20	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0004933_20	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0004933_21	phrog_9	329.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0004933_21	UniRef90_A0A374JP15	919.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0004933_21	411468.CLOSCI_00551	845.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-0004933_21	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0004933_21	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0004933_21	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0004933_21	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0004933_22	phrog_1066	51.4	0.000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0004933_22	411468.CLOSCI_00552	76.3	0.00000000000000131	N/A	N/A
KOfam	UHGV-0004933_23	K07451	40.1	0.00000000006	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0004933_23	phrog_119	63.0	4.6e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004933_23	UniRef90_A0A374JQS6	229.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0004933_23	411468.CLOSCI_00553	134.0	1.94e-39	HNH endonuclease	N/A
COG	UHGV-0004933_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0004933_24	411468.CLOSCI_00554	120.0	1.03e-33	N/A	N/A
eggNOG-mapper	UHGV-0004933_25	1235800.C819_02253	67.0	0.0000000000464	N/A	N/A
PHROG	UHGV-0004933_26	phrog_824	121.9	2.8e-36	N/A	unknown function
UniRef90	UHGV-0004933_26	UniRef90_A0A374JR68	335.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0004933_26	411468.CLOSCI_00556	246.0	0	VRR_NUC	N/A
Pfam	UHGV-0004933_26	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
PHROG	UHGV-0004933_27	phrog_3584	235.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0004933_27	411468.CLOSCI_00558	429.0	0	N/A	N/A
structural_annotation	UHGV-0004933_27	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0004933_28	K00390	40.1	3.6e-21	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0004933_28	phrog_424	122.7	2.9e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0004933_28	UniRef90_A0A7U9R7H5	371.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-0004933_28	397291.C804_05723	259.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0004933_28	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0004933_28	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0004933_28	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0004933_30	phrog_24386	124.2	1.2e-36	N/A	unknown function
eggNOG-mapper	UHGV-0004933_30	411468.CLOSCI_00562	185.0	0	COG NOG28949 non supervised orthologous group	N/A
COG	UHGV-0004933_30	COG0241	N/A	N/A	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	N/A
structural_annotation	UHGV-0004933_30	TIGR01689,COG0241	N/A	N/A	N/A	N/A
PHROG	UHGV-0004933_32	phrog_25385	75.7	3.7e-22	N/A	unknown function
UniRef90	UHGV-0004933_32	UniRef90_UPI00189D9989	279.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0004933_32	411468.CLOSCI_00565	112.0	1.86e-29	N/A	N/A
COG	UHGV-0004933_34	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0004933_35	K00558	116.1	2.6e-34	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0004933_35	phrog_116	106.0	7.6e-38	DNA methyltransferase	other
UniRef90	UHGV-0004933_35	UniRef90_UPI00189F9B8A	575.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0004933_35	397290.C810_05213	231.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0004933_35	MTase_II_00174	136.6	3e-40	Type II methyltransferase	RM
Pfam	UHGV-0004933_35	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0004933_35	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0004933_35	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0004933_35	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0004933_36	phrog_20014	51.8	0.0000000000000087	N/A	unknown function
eggNOG-mapper	UHGV-0004933_36	1235798.C817_02590	76.6	3.39e-17	N/A	N/A
eggNOG-mapper	UHGV-0004933_38	411468.CLOSCI_00572	79.3	6.02e-17	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0004933	Yes	29,020	46	82	1
UHGV-0011283	No	28,864	46	82	1
UHGV-0033656	No	19,907	45	57	1