vOTU vOTU-035220

vOTU: vOTU-035220

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-035220
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter torques
Taxonomy (UHGV)	vFAM-00074 → vSUBFAM-02926 → vGENUS-06531 → vOTU-035220
Host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → Borkfalkiaceae → UMGS775 → UMGS775 sp900545325
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0097785
Biosample ID	SAMEA3449254
Genome length (bp)	30,487 bps
CheckV completeness	89.33% (Medium-quality)
CDS count	48
CDS density	96.50%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → Borkfalkiaceae → UMGS775 → UMGS775 sp900545325	Total connections	10	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter torques	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 89.33)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0097785_1	phrog_497	46.9	0.00000000000053	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0097785_1	UniRef90_UPI00037168FB	116.0	1.33e-31	type II toxin-antitoxin system HicB family antitoxin	N/A
eggNOG-mapper	UHGV-0097785_1	1122925.KB895394_gene1703	116.0	2.23e-32	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
COG	UHGV-0097785_1	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0097785_3	PF09393,PF05561,TIGR02126,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0097785_4	UniRef90_A0A2Z4GU91	94.7	5.16e-23	Minor capsid protein	N/A
structural_annotation	UHGV-0097785_5	PF07405,TIGR01563	N/A	N/A	N/A	N/A
UniRef90	UHGV-0097785_7	UniRef90_A0A2Z4GUC0	699.0	0	Chitobiase/beta-hexosaminidase	N/A
eggNOG-mapper	UHGV-0097785_7	1243664.CAVL020000028_gene58	83.2	0.0000000000000688	Fn3 associated	N/A
Pfam	UHGV-0097785_7	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
COG	UHGV-0097785_7	COG2374	N/A	N/A	Predicted extracellular nuclease	N/A
structural_annotation	UHGV-0097785_7	PF05065,PF13620,MF_04119,TIGR04387,TIGR04134,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0097785_9	phrog_581	93.6	5e-29	minor head protein	head and packaging
UniRef90	UHGV-0097785_9	UniRef90_A0A2Z4GUI4	236.0	0	Minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0097785_9	997296.PB1_16234	66.6	0.00000000245	Phage minor capsid protein 2	N/A
Pfam	UHGV-0097785_9	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0097785_9	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0097785_9	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0097785_10	phrog_533	75.8	4.2e-23	portal protein	head and packaging
UniRef90	UHGV-0097785_10	UniRef90_A0A2Z4GUT7	686.0	0	Portal protein	N/A
structural_annotation	UHGV-0097785_10	PF05133,MF_04120,TIGR01542,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0097785_11	K06909	132.6	4e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0097785_11	phrog_2	74.2	2.9e-21	terminase large subunit	head and packaging
UniRef90	UHGV-0097785_11	UniRef90_A0A2Z4GUK2	704.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0097785_11	272626.lin0105	104.0	1.26e-21	Terminase RNAseH like domain	N/A
Pfam	UHGV-0097785_11	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0097785_11	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
COG	UHGV-0097785_11	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0097785_11	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0097785_12	UniRef90_A0A3E2U5Z1	53.5	0.00000223	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0097785_12	1235790.C805_00037	52.4	0.00000125	N/A	N/A
Pfam	UHGV-0097785_12	PF04218	N/A	N/A	CENP-B N-terminal DNA-binding domain	CENP-B_N
structural_annotation	UHGV-0097785_12	PF02796,NF040785	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0097785_14	742733.HMPREF9469_02880	73.2	0.00000000000478	Phage head morphogenesis protein, SPP1 gp7 family	N/A
COG	UHGV-0097785_14	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0097785_16	phrog_248	46.8	0.00000000000071	transcriptional activator	transcription regulation
UniRef90	UHGV-0097785_16	UniRef90_A0A7C7AHY6	73.6	0.0000000000000621	N/A	N/A
eggNOG-mapper	UHGV-0097785_16	203119.Cthe_2469	70.1	0.000000000000223	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-0097785_16	PF05263,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0097785_21	K00390	100.5	1.6e-29	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0097785_21	phrog_424	118.4	6.4e-35	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0097785_21	UniRef90_UPI001D07F2A4	217.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0097785_21	397291.C804_05723	204.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
PADLOC	UHGV-0097785_21	BrxP_00001	49.7	0.0000000000000044	BrxP	BREX
Pfam	UHGV-0097785_21	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0097785_21	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0097785_21	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0097785_22	K03111	127.8	1.5e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0097785_22	phrog_44	121.6	7.8e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0097785_22	UniRef90_A0A2V2GHM3	156.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0097785_22	1286171.EAL2_c22110	110.0	4.4e-29	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0097785_22	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0097785_22	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0097785_22	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0097785_22	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0097785_22	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0097785_23	phrog_9804	58.7	3.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0097785_23	903814.ELI_3550	53.1	0.00000456	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0097785_23	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0097785_23	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0097785_24	phrog_3136	127.1	6.7e-38	N/A	unknown function
UniRef90	UHGV-0097785_24	UniRef90_A0A3D0HBD2	131.0	1.9e-35	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0097785_24	1235792.C808_00630	71.6	0.00000000000116	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-0097785_24	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0097785_24	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0097785_24	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0097785_25	phrog_2562	145.9	3.50325e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0097785_25	UniRef90_UPI001D04D0BE	200.0	0	N/A	N/A
eggNOG-mapper	UHGV-0097785_25	1196322.A370_04251	189.0	0	N/A	N/A
Pfam	UHGV-0097785_25	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0097785_25	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0097785_25	PF14297,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-0097785_26	phrog_4973	55.6	9.9e-16	N/A	unknown function
UniRef90	UHGV-0097785_26	UniRef90_A0A1M5S5U4	67.8	0.000000000000226	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0097785_26	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0097785_26	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-0097785_28	phrog_14970	192.5	0	N/A	unknown function
UniRef90	UHGV-0097785_28	UniRef90_UPI00123F00F5	171.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0097785_28	1122981.AUME01000026_gene555	150.0	5.09933e-42	double-strand break repair protein	N/A
Pfam	UHGV-0097785_28	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0097785_28	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0097785_28	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0097785_29	phrog_9562	96.2	2.7e-29	N/A	unknown function
UniRef90	UHGV-0097785_29	UniRef90_UPI001C3D9077	160.0	0	N/A	N/A
eggNOG-mapper	UHGV-0097785_29	272563.CD630_29960	133.0	1.45e-36	Pentapeptide repeat protein	N/A
Pfam	UHGV-0097785_29	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
Pfam	UHGV-0097785_29	PF19062	N/A	N/A	N/A	DUF5758
COG	UHGV-0097785_29	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0097785_29	PF19062,PF13599,NF000139	N/A	N/A	N/A	N/A
PHROG	UHGV-0097785_30	phrog_253	126.5	1.8e-37	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0097785_30	UniRef90_A0A1A8Y0W1	79.0	0.00000000000000159	N/A	N/A
eggNOG-mapper	UHGV-0097785_30	1226322.HMPREF1545_04074	74.7	0.0000000000000113	Siphovirus Gp157	N/A
Pfam	UHGV-0097785_30	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0097785_30	PF05565,NF002139	N/A	N/A	N/A	N/A
KOfam	UHGV-0097785_33	K07729	49.5	0.000000000000097	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0097785_33	UniRef90_A0A2A4DTX0	52.4	0.00000015	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0097785_33	768486.EHR_02755	52.4	0.0000000251	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0097785_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0097785_33	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0097785_33	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0097785_34	K20342	46.5	0.00000000000051	comR; HTH-type transcriptional regulator, regulator for ComX	N/A
PHROG	UHGV-0097785_34	phrog_8	57.8	2.6e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0097785_34	UniRef90_A0A316PCK8	72.8	0.00000000000000498	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0097785_34	1450694.BTS2_3368	67.0	0.000000000000154	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0097785_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0097785_34	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0097785_41	phrog_2428	103.7	1.3e-30	N/A	unknown function
UniRef90	UHGV-0097785_41	UniRef90_UPI0007E0147E	132.0	1.39e-37	ABC transporter ATPase	N/A
eggNOG-mapper	UHGV-0097785_41	632245.CLP_1645	132.0	4.71e-38	N/A	N/A
dbAPIS	UHGV-0097785_41	APIS024	N/A	N/A	Tad1 proteins are not an enzymes, but are 'sponges' that bind and sequester the immune signaling molecule (cyclic ADP-ribose or gcADPR) produced by TIR-domain proteins, thus decoupling phage sensing from immune effector activation and rendering Thoeris inactive.	N/A
PHROG	UHGV-0097785_44	phrog_5073	68.8	9.3e-20	tail fiber protein	tail
Pfam	UHGV-0097785_44	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
COG	UHGV-0097785_44	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0097785_45	PF06013,MF_00683,NF003844,COG4842	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0097785_46	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
UniRef90	UHGV-0097785_48	UniRef90_UPI000C59E9CB	72.4	0.00000000000000791	YigZ family protein	N/A
eggNOG-mapper	UHGV-0097785_48	1504823.CCMM01000011_gene1414	131.0	1.77e-37	N/A	N/A
Pfam	UHGV-0097785_48	PF01205	N/A	N/A	N/A	UPF0029
COG	UHGV-0097785_48	COG1739	N/A	N/A	Putative translation regulator, IMPACT (imprinted ancient) protein family	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0097785	Yes	30,487	43	89	1
UHGV-1447953	No	27,070	44	79	1