vOTU vOTU-035230

vOTU: vOTU-035230

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-035230
Number of genomes	2
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00011 → vSUBFAM-05595 → vOTU-035230
Host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Gemellaceae → Gemella → Gemella haemolysans_A
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1448280
Biosample ID	N/A
Genome length (bp)	24,704 bps
CheckV completeness	64.37% (Medium-quality)
CDS count	35
CDS density	94.90%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Gemellaceae → Gemella → Gemella haemolysans_A	Total connections	2	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 64.37)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1448280_1	K00558	61.8	7.9e-18	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1448280_1	phrog_16427	168.0	0	DNA methyltransferase	other
UniRef90	UHGV-1448280_1	UniRef90_A0A3P1BKT0	223.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-1448280_1	482234.SCAZ3_10455	227.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1448280_1	MTase_II_00058	75.1	1.9e-21	Type II methyltransferase	RM
Pfam	UHGV-1448280_1	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1448280_1	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-1448280_3	phrog_12650	70.6	1.1e-20	N/A	unknown function
structural_annotation	UHGV-1448280_3	NF010673	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1448280_5	NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-1448280_6	phrog_36	54.7	0.000000000000002	transcriptional regulator	transcription regulation
UniRef90	UHGV-1448280_6	UniRef90_A0A6H1F453	125.0	4.79e-34	N/A	N/A
Pfam	UHGV-1448280_6	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1448280_6	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1448280_6	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-1448280_7	K07474	104.1	2.7e-30	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1448280_7	phrog_51	118.7	4.8e-35	terminase small subunit	head and packaging
UniRef90	UHGV-1448280_7	UniRef90_A0A2X4NG90	221.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1448280_7	562981.HMPREF0428_01825	184.0	0	Terminase small subunit	N/A
Pfam	UHGV-1448280_7	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1448280_7	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1448280_7	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1448280_8	K06909	266.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1448280_8	phrog_3717	158.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1448280_8	UniRef90_A0A2X4NB78	845.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1448280_8	562981.HMPREF0428_00985	803.0	0	Terminase RNAseH like domain	N/A
Pfam	UHGV-1448280_8	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1448280_8	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1448280_8	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1448280_8	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1448280_8	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1448280_9	phrog_533	583.8	0	portal protein	head and packaging
UniRef90	UHGV-1448280_9	UniRef90_A0A2X4N9Z3	920.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1448280_9	562981.HMPREF0428_00984	865.0	0	portal protein	N/A
Pfam	UHGV-1448280_9	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1448280_9	TIGR01542.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1448280_9	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1448280_10	phrog_581	283.6	0	minor head protein	head and packaging
UniRef90	UHGV-1448280_10	UniRef90_A0A2X4N6F7	1085.0	0	NAD(+)--arginine ADP-ribosyltransferase EFV	N/A
eggNOG-mapper	UHGV-1448280_10	562981.HMPREF0428_00983	603.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1448280_10	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-1448280_10	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
structural_annotation	UHGV-1448280_10	PF06152,PF03496,NF040688	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1448280_11	562982.HMPREF0432_00874	100.0	9.59e-28	N/A	N/A
PHROG	UHGV-1448280_12	phrog_194	135.6	3.9e-40	head scaffolding protein	head and packaging
UniRef90	UHGV-1448280_12	UniRef90_A0A2X4R123	328.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1448280_12	646413.C5IUJ4_9CAUD	179.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-1448280_12	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1448280_12	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1448280_13	phrog_840	430.1	0	major head protein	head and packaging
UniRef90	UHGV-1448280_13	UniRef90_A0A6H1F174	412.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1448280_13	562981.HMPREF0428_00981	412.0	0	N/A	N/A
structural_annotation	UHGV-1448280_13	PF03864,MF_04119,TIGR04387,COG1659	N/A	N/A	N/A	N/A
PHROG	UHGV-1448280_15	phrog_541	106.4	1.7e-31	head-tail adaptor	connector
UniRef90	UHGV-1448280_15	UniRef90_A0A380K6A1	137.0	2.86e-39	N/A	N/A
eggNOG-mapper	UHGV-1448280_15	562981.HMPREF0428_00979	201.0	0	N/A	N/A
PHROG	UHGV-1448280_16	phrog_793	91.8	5.2e-27	head-tail adaptor	connector
UniRef90	UHGV-1448280_16	UniRef90_A0A2X4N3V8	201.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1448280_16	562981.HMPREF0428_00978	170.0	0	Minor capsid protein	N/A
Pfam	UHGV-1448280_16	PF10665	N/A	N/A	Minor capsid protein	Minor_capsid_1
structural_annotation	UHGV-1448280_16	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1448280_17	phrog_556	72.9	4.1e-21	minor head protein	head and packaging
UniRef90	UHGV-1448280_17	UniRef90_A0A2X4NG99	221.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1448280_17	1246.JMEA01000006_gene45	113.0	5.75e-31	Minor capsid protein	N/A
Pfam	UHGV-1448280_17	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1448280_17	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1448280_18	phrog_913	147.7	3.22299e-44	minor head protein	head and packaging
UniRef90	UHGV-1448280_18	UniRef90_A0A2X4NB85	242.0	0	Minor capsid protein from bacteriophage	N/A
eggNOG-mapper	UHGV-1448280_18	562981.HMPREF0428_00976	216.0	0	Minor capsid protein from bacteriophage	N/A
Pfam	UHGV-1448280_18	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-1448280_18	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1448280_19	phrog_820	164.3	0	major tail protein	tail
UniRef90	UHGV-1448280_19	UniRef90_A0A0X8KMB0	251.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1448280_19	562981.HMPREF0428_00975	233.0	0	N/A	N/A
structural_annotation	UHGV-1448280_19	PF08813,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1448280_20	phrog_1061	62.8	6.5e-18	N/A	unknown function
UniRef90	UHGV-1448280_20	UniRef90_A0A139RN56	88.6	2.55e-20	N/A	N/A
eggNOG-mapper	UHGV-1448280_20	562981.HMPREF0428_00974	134.0	6.04e-39	N/A	N/A
structural_annotation	UHGV-1448280_20	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1448280_21	phrog_706	211.8	0	N/A	unknown function
UniRef90	UHGV-1448280_21	UniRef90_A0A2X4RDY7	382.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1448280_21	562981.HMPREF0428_00973	260.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1448280_21	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1448280_21	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1448280_22	phrog_1204	540.9	0	tail protein	tail
UniRef90	UHGV-1448280_22	UniRef90_A0A2X4R133	1127.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1448280_22	562981.HMPREF0428_00972	746.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-1448280_22	PF20155	N/A	N/A	Tape measure protein	TMP_3
Pfam	UHGV-1448280_22	PF04513	N/A	N/A	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
NCBIFam	UHGV-1448280_22	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1448280_22	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-1448280_23	phrog_33	64.1	3.1e-18	distal tail protein Dit	tail
UniRef90	UHGV-1448280_23	UniRef90_A0A2X4NBW4	476.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1448280_23	562981.HMPREF0428_00971	437.0	0	phage tail	N/A
COG	UHGV-1448280_23	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1448280_23	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1448280_24	phrog_2270	302.1	0	N/A	unknown function
UniRef90	UHGV-1448280_24	UniRef90_A0A2X4N412	1130.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1448280_24	562981.HMPREF0428_00970	643.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1448280_24	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
NCBIFam	UHGV-1448280_24	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1448280_24	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1448280_24	PF14594,PF13620,TIGR01665,TIGR04183,COG4926	N/A	N/A	N/A	N/A
KOfam	UHGV-1448280_25	K16628	48.5	0.000000000000026	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-1448280_25	phrog_6049	98.5	1.9e-34	tail fiber protein	tail
UniRef90	UHGV-1448280_25	UniRef90_A0A2X4N6M2	272.0	0	Collagen triple helix repeat (20 copies)	N/A
eggNOG-mapper	UHGV-1448280_25	562981.HMPREF0428_01809	84.7	5.15e-16	N/A	N/A
Pfam	UHGV-1448280_25	PF18454	N/A	N/A	Major tropism determinant N-terminal domain	Mtd_N
Pfam	UHGV-1448280_25	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-1448280_25	PF18454	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1448280_26	PF21231,COG0806	N/A	N/A	N/A	N/A
PHROG	UHGV-1448280_27	phrog_7841	332.0	0	N/A	unknown function
UniRef90	UHGV-1448280_27	UniRef90_A0A2X4NGA9	405.0	0	Gp58-like protein	N/A
eggNOG-mapper	UHGV-1448280_27	1461246.X2KUF9_9VIRU	162.0	9.6e-40	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-1448280_27	PF07902	N/A	N/A	gp58-like protein	Gp58
Pfam	UHGV-1448280_27	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-1448280_27	PF13884	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1448280_29	PF07104	N/A	N/A	N/A	N/A
PHROG	UHGV-1448280_32	phrog_1129	79.4	2.7e-23	holin	lysis
UniRef90	UHGV-1448280_32	UniRef90_U2RW65	111.0	2.64e-30	Holin family protein	N/A
eggNOG-mapper	UHGV-1448280_32	1321820.HMPREF1983_00916	111.0	4.43e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1448280_32	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1448280_32	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1448280_33	phrog_1309	250.3	0	endolysin	lysis
UniRef90	UHGV-1448280_33	UniRef90_A0A0X8KM97	410.0	0	Cell wall hydrolase	N/A
eggNOG-mapper	UHGV-1448280_33	1321820.HMPREF1983_00914	406.0	0	CHAP domain	N/A
Pfam	UHGV-1448280_33	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1448280_33	PF08460	N/A	N/A	Bacterial SH3 domain	SH3_5
COG	UHGV-1448280_33	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-1448280_33	PF08460,PF05382,TIGR02219,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-1448280_35	phrog_2277	61.9	7.3e-18	N/A	unknown function

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1448280	Yes	24,704	34	64	1
UHGV-1466520	No	22,789	34	60	1