vOTU vOTU-035318

vOTU: vOTU-035318

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-035318
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-00673 → vOTU-035318
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0073408
Biosample ID	SAMEA2737809
Genome length (bp)	31,258 bps
CheckV completeness	88.84% (Medium-quality)
CDS count	45
CDS density	93.20%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	851	Host agreement	85.31
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	145	Host agreement	88.97

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 88.84)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0073408_1	K22300	59.0	1.2e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0073408_1	phrog_8	51.1	0.000000000000028	transcriptional regulator	transcription regulation
UniRef90	UHGV-0073408_1	UniRef90_A0A3C1CUP1	239.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0073408_1	588581.Cpap_0877	62.8	0.000000000088	helix-turn-helix	N/A
Pfam	UHGV-0073408_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0073408_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0073408_1	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0073408_2	phrog_199	73.0	3.8e-21	holin	lysis
UniRef90	UHGV-0073408_2	UniRef90_UPI00164BD6C2	271.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0073408_2	1160721.RBI_I01565	150.0	1.68156e-44	Bacteriophage holin family	N/A
Pfam	UHGV-0073408_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0073408_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0073408_2	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0073408_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0073408_3	phrog_918	120.8	4.4e-36	N/A	unknown function
UniRef90	UHGV-0073408_3	UniRef90_UPI000F4ECE86	119.0	1.25e-33	N/A	N/A
eggNOG-mapper	UHGV-0073408_3	1504823.CCMM01000008_gene1021	125.0	1.19e-36	N/A	N/A
Pfam	UHGV-0073408_3	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0073408_3	PF19791	N/A	N/A	N/A	N/A
KOfam	UHGV-0073408_4	K07273	200.9	0	acm; lysozyme	N/A
PHROG	UHGV-0073408_4	phrog_291	177.6	0	endolysin	lysis
UniRef90	UHGV-0073408_4	UniRef90_R6NXV5	415.0	0	Glycoside Hydrolase Family 25-like lysozyme/endolysin	N/A
eggNOG-mapper	UHGV-0073408_4	1120933.ATUY01000002_gene158	171.0	0	lysozyme activity	N/A
Pfam	UHGV-0073408_4	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0073408_4	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0073408_4	PF01183,TIGR04303,COG3757,COG5492	N/A	N/A	N/A	N/A
UniRef90	UHGV-0073408_6	UniRef90_A0A1C6HHE5	108.0	4.42e-23	BppU_N domain-containing protein	N/A
structural_annotation	UHGV-0073408_6	PF10651,PF00541,NF040788	N/A	N/A	N/A	N/A
PHROG	UHGV-0073408_7	phrog_1067	123.1	2.9e-36	minor head protein	head and packaging
UniRef90	UHGV-0073408_7	UniRef90_A0A1G5CPD2	159.0	2.51001e-41	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0073408_7	562981.HMPREF0428_00970	79.7	0.000000000000352	Phage minor structural protein	N/A
Pfam	UHGV-0073408_7	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0073408_7	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0073408_7	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0073408_7	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0073408_8	phrog_33	60.4	5.5e-17	distal tail protein Dit	tail
UniRef90	UHGV-0073408_8	UniRef90_UPI00073F69EF	72.4	0.000000000015	phage tail family protein	N/A
eggNOG-mapper	UHGV-0073408_8	1582149.A0A0A8WHP7_9CAUD	59.7	0.0000000965	Phage tail protein	N/A
structural_annotation	UHGV-0073408_8	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0073408_9	K20282	43.6	0.00000000000078	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-0073408_9	phrog_5218	305.2	0	N/A	unknown function
UniRef90	UHGV-0073408_9	UniRef90_UPI000E474EFE	780.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0073408_9	999413.HMPREF1094_02001	281.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0073408_9	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0073408_9	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0073408_9	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0073408_11	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0073408_12	phrog_88	62.9	5.5e-18	major tail protein	tail
UniRef90	UHGV-0073408_12	UniRef90_A0A1G5CNS8	173.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0073408_12	411470.RUMGNA_02319	61.6	0.00000000517	COG NOG11304 non supervised orthologous group	N/A
NCBIFam	UHGV-0073408_12	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0073408_12	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0073408_13	UniRef90_UPI000E5564A4	173.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0073408_13	1118057.CAGX01000043_gene486	67.0	0.00000000000244	Bacteriophage HK97-gp10, putative tail-component	N/A
structural_annotation	UHGV-0073408_13	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0073408_14	698758.AXY_02180	62.4	0.0000000000394	N/A	N/A
structural_annotation	UHGV-0073408_14	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-0073408_15	phrog_19734	62.9	4.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-0073408_15	86416.Clopa_0343	52.0	0.000000578	N/A	N/A
structural_annotation	UHGV-0073408_15	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0073408_16	phrog_749	50.9	0.000000000000026	N/A	unknown function
UniRef90	UHGV-0073408_16	UniRef90_A0A1G5CMX8	104.0	3.52e-27	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0073408_16	349161.Dred_2603	55.8	0.00000000907	N/A	N/A
PHROG	UHGV-0073408_17	phrog_10	112.7	4.1e-33	major head protein	head and packaging
UniRef90	UHGV-0073408_17	UniRef90_A0A412ULW9	571.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0073408_17	1211817.CCAT010000053_gene2132	321.0	0	Phage capsid family	N/A
Pfam	UHGV-0073408_17	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0073408_17	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0073408_17	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0073408_17	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0073408_18	K01358	144.7	9.69699e-43	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0073408_18	phrog_94	206.7	0	head maturation protease	head and packaging
UniRef90	UHGV-0073408_18	UniRef90_A0A412ULU1	385.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0073408_18	86416.Clopa_0340	172.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0073408_18	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0073408_18	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0073408_18	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0073408_19	phrog_12	100.7	1.3e-29	portal protein	head and packaging
UniRef90	UHGV-0073408_19	UniRef90_A0A412ULV9	572.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0073408_19	1415774.U728_1254	267.0	0	Phage portal protein	N/A
Pfam	UHGV-0073408_19	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0073408_19	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0073408_19	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0073408_19	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0073408_20	phrog_9	285.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0073408_20	UniRef90_A0A412UM03	982.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0073408_20	86416.Clopa_0337	619.0	0	Phage Terminase	N/A
Pfam	UHGV-0073408_20	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0073408_20	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0073408_20	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0073408_20	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0073408_21	phrog_5110	82.8	3.4e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0073408_21	UniRef90_UPI00057D0A7C	113.0	1.2e-30	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0073408_21	86416.Clopa_0336	106.0	1.56e-28	N/A	N/A
Pfam	UHGV-0073408_21	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0073408_21	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0073408_22	phrog_119	70.1	3.5e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0073408_22	UniRef90_A0A412ULY9	182.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0073408_22	1123315.AUIP01000014_gene1945	91.3	1.71e-22	HNH endonuclease	N/A
Pfam	UHGV-0073408_22	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0073408_22	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0073408_23	1304880.JAGB01000002_gene2225	54.7	0.000000129	N/A	N/A
structural_annotation	UHGV-0073408_23	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0073408_24	phrog_3584	147.2	1.09301e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0073408_24	1235800.C819_00515	88.6	3.99e-18	N/A	N/A
structural_annotation	UHGV-0073408_24	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0073408_26	phrog_824	145.3	1.90577e-43	N/A	unknown function
UniRef90	UHGV-0073408_26	UniRef90_A0A3D3D6C6	202.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0073408_26	397288.C806_00096	155.0	0	VRR_NUC	N/A
Pfam	UHGV-0073408_26	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0073408_26	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0073408_27	phrog_24518	78.4	1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0073408_27	1519439.JPJG01000077_gene922	95.1	8.71e-22	N/A	N/A
PHROG	UHGV-0073408_29	phrog_15609	120.1	8.2e-36	N/A	unknown function
UniRef90	UHGV-0073408_29	UniRef90_A0A373SLQ6	104.0	5.7e-22	N/A	N/A
eggNOG-mapper	UHGV-0073408_29	1514668.JOOA01000001_gene225	67.8	0.000000000758	N/A	N/A
structural_annotation	UHGV-0073408_29	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0073408_30	phrog_8470	260.4	0	N/A	unknown function
UniRef90	UHGV-0073408_30	UniRef90_A0A1M7BII1	150.0	2.01e-34	PcfJ-like protein	N/A
eggNOG-mapper	UHGV-0073408_30	457412.RSAG_01172	179.0	9.80909e-45	PcfJ-like protein	N/A
Pfam	UHGV-0073408_30	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0073408_30	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0073408_31	phrog_36399	40.2	0.000000000013	N/A	unknown function
structural_annotation	UHGV-0073408_35	COG1862	N/A	N/A	N/A	N/A
UniRef90	UHGV-0073408_36	UniRef90_UPI0005510EBF	64.7	0.00000000000484	helix-turn-helix domain-containing protein	N/A
PHROG	UHGV-0073408_37	phrog_2232	217.5	0	N/A	unknown function
UniRef90	UHGV-0073408_37	UniRef90_UPI00164B82D7	461.0	0	N/A	N/A
eggNOG-mapper	UHGV-0073408_37	748224.HMPREF9436_01448	157.0	4.62428e-44	N/A	N/A
Pfam	UHGV-0073408_37	PF14337	N/A	N/A	Abortive infection alpha	Abi_alpha
structural_annotation	UHGV-0073408_37	PF14337,TIGR03899	N/A	N/A	N/A	N/A
PHROG	UHGV-0073408_39	phrog_585	110.3	1.4e-32	N/A	unknown function
UniRef90	UHGV-0073408_39	UniRef90_A0A851IGZ3	130.0	1.95e-36	N/A	N/A
eggNOG-mapper	UHGV-0073408_39	1033744.CAEL01000029_gene1306	124.0	3.07e-34	N/A	N/A
Pfam	UHGV-0073408_39	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-0073408_39	PF10711,MF_01819,TIGR03433,COG3432	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0073408_42	1219626.HMPREF1639_07045	54.7	0.00000000374	N/A	N/A
structural_annotation	UHGV-0073408_42	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0073408_43	UniRef90_UPI00164B50E0	126.0	2.51e-34	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0073408_43	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0073408_43	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0073408_44	phrog_1914	172.8	0	N/A	unknown function
UniRef90	UHGV-0073408_44	UniRef90_A0A374NDM7	224.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0073408_44	1160721.RBI_I01604	152.0	4.34403e-44	N/A	N/A
Pfam	UHGV-0073408_44	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0073408_44	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0073408_44	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0073408_45	phrog_1847	357.5	0	N/A	unknown function
UniRef90	UHGV-0073408_45	UniRef90_U2Q2K4	526.0	0	T5orf172 domain-containing protein	N/A
eggNOG-mapper	UHGV-0073408_45	1256908.HMPREF0373_00641	526.0	0	T5orf172	N/A
Pfam	UHGV-0073408_45	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-0073408_45	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0073408_45	PF13250,NF041454	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0073408	Yes	31,258	36	89	1
UHGV-1452140	No	26,745	37	76	1