vOTU vOTU-035409

vOTU: vOTU-035409

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-035409
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00153 → vSUBFAM-01424 → vGENUS-01899 → vOTU-035409
Host lineage	Bacteria → Actinobacteriota → Actinomycetia → Actinomycetales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium dentium
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1459494
Biosample ID	SAMN00035453
Genome length (bp)	24,069 bps
CheckV completeness	51.72% (Medium-quality)
CDS count	39
CDS density	92.10%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Actinobacteriota → Actinomycetia → Actinomycetales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium dentium	Total connections	17	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 51.72)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1459494_3	phrog_156	195.5	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1459494_3	1519439.JPJG01000060_gene1886	407.0	0	N/A	N/A
structural_annotation	UHGV-1459494_3	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1459494_4	K21523	70.0	1.6e-20	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-1459494_4	phrog_2	98.6	9.6e-29	terminase large subunit	head and packaging
UniRef90	UHGV-1459494_4	UniRef90_UPI001F401ABC	395.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1459494_4	696281.Desru_1088	192.0	0	Phage terminase large subunit	N/A
COG	UHGV-1459494_4	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1459494_4	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-1459494_5	phrog_3064	71.7	7.8e-21	terminase	head and packaging
UniRef90	UHGV-1459494_5	UniRef90_A0A2I7QK24	75.1	0.0000000000000788	Coil containing protein (Fragment)	N/A
PHROG	UHGV-1459494_9	phrog_918	109.1	1.5e-32	N/A	unknown function
UniRef90	UHGV-1459494_9	UniRef90_UPI001D020797	121.0	4.21e-34	N/A	N/A
eggNOG-mapper	UHGV-1459494_9	1499683.CCFF01000014_gene3910	119.0	2.96e-34	N/A	N/A
Pfam	UHGV-1459494_9	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-1459494_9	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-1459494_14	phrog_1571	68.5	1.9e-30	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1459494_14	UniRef90_A0A1Q9J7B4	154.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-1459494_14	702438.HMPREF9431_00759	139.0	7.39045e-42	HNH endonuclease	N/A
PADLOC	UHGV-1459494_14	ZorE2_00001	41.7	0.000000000028	HNH endonuclease	Zorya
COG	UHGV-1459494_14	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1459494_14	NF008448	N/A	N/A	N/A	N/A
PHROG	UHGV-1459494_16	phrog_799	138.1	6.40001e-41	DNA methyltransferase	other
UniRef90	UHGV-1459494_16	UniRef90_A0A373PYN5	170.0	0	NAD(P)-dependent oxidoreductase	N/A
eggNOG-mapper	UHGV-1459494_16	1123263.AUKY01000096_gene1823	150.0	9.10844e-44	DNA restriction-modification system	N/A
COG	UHGV-1459494_16	COG0827	N/A	N/A	Adenine-specific DNA N6-methylase	N/A
structural_annotation	UHGV-1459494_16	PF03848,MF_00341,NF012219,COG1255	N/A	N/A	N/A	N/A
KOfam	UHGV-1459494_17	K00558	209.8	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1459494_17	phrog_116	253.4	0	DNA methyltransferase	other
UniRef90	UHGV-1459494_17	UniRef90_A0A2Z4GUI8	626.0	0	Site-specific DNA methylase	N/A
eggNOG-mapper	UHGV-1459494_17	1519439.JPJG01000060_gene1872	501.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1459494_17	MTase_II_00164	85.7	2.7e-31	Type II methyltransferase	RM
Pfam	UHGV-1459494_17	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1459494_17	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1459494_17	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1459494_20	phrog_1029	204.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1459494_20	1519439.JPJG01000059_gene1911	152.0	6.19374e-43	N/A	N/A
structural_annotation	UHGV-1459494_20	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-1459494_21	phrog_997	68.9	9.1e-20	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1459494_21	UniRef90_UPI0011581F2E	55.8	0.000000177	replication terminator protein	N/A
eggNOG-mapper	UHGV-1459494_21	562743.JH976434_gene1044	53.5	0.00000028	N/A	N/A
KOfam	UHGV-1459494_22	K03111	147.3	1.4013e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1459494_22	phrog_44	137.8	6.50006e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1459494_22	UniRef90_A0A2V2ET02	193.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1459494_22	1121423.JONT01000003_gene1118	119.0	1.09e-32	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1459494_22	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1459494_22	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1459494_22	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1459494_22	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1459494_22	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1459494_23	K03111	54.7	0.0000000000000013	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1459494_23	phrog_26861	89.4	1.3e-26	N/A	unknown function
UniRef90	UHGV-1459494_23	UniRef90_R6WJP8	174.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1459494_23	1304880.JAGB01000001_gene702	168.0	0	PFAM single-strand binding protein Primosomal replication protein n	N/A
Pfam	UHGV-1459494_23	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1459494_23	NF004476.0	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1459494_23	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1459494_23	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1459494_24	742817.HMPREF9449_01803	82.4	5.69e-16	N/A	N/A
structural_annotation	UHGV-1459494_24	PF14297,TIGR01714,COG3756	N/A	N/A	N/A	N/A
KOfam	UHGV-1459494_25	K01160	55.1	0.0000000000000023	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1459494_25	phrog_140	121.7	4.8e-36	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1459494_25	UniRef90_A0A1I0CMR7	115.0	3.54e-30	Holliday junction resolvase RusA (Prophage-encoded endonuclease)	N/A
eggNOG-mapper	UHGV-1459494_25	1123263.AUKY01000072_gene2102	112.0	6.65e-30	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1459494_25	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1459494_25	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1459494_25	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1459494_26	K07455	187.3	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1459494_26	phrog_148	202.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1459494_26	UniRef90_UPI000F53F699	338.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-1459494_26	1408437.JNJN01000039_gene372	289.0	0	RecT family	N/A
Pfam	UHGV-1459494_26	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1459494_26	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1459494_26	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1459494_26	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1459494_27	phrog_674	153.2	1.4013e-45	N/A	unknown function
UniRef90	UHGV-1459494_27	UniRef90_A0A4P9C8L7	150.0	3.32e-40	N/A	N/A
eggNOG-mapper	UHGV-1459494_27	658655.HMPREF0988_02587	94.4	1.35e-19	N/A	N/A
Pfam	UHGV-1459494_27	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1459494_27	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1459494_28	phrog_434	142.4	3.30006e-42	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1459494_28	UniRef90_A0A1W1YQ31	192.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-1459494_28	1121441.AUCX01000014_gene536	171.0	0	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-1459494_28	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1459494_28	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1459494_28	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1459494_28	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
Pfam	UHGV-1459494_33	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
KOfam	UHGV-1459494_34	K07497	48.0	0.00000000000024	K07497; putative transposase	N/A
PHROG	UHGV-1459494_34	phrog_8463	83.2	2.9e-24	transposase	integration and excision
UniRef90	UHGV-1459494_34	UniRef90_A0A355V3R3	255.0	0	IS481 family transposase	N/A
eggNOG-mapper	UHGV-1459494_34	1123250.KB908380_gene745	162.0	0	COG2801 Transposase and inactivated derivatives	N/A
Pfam	UHGV-1459494_34	PF00665	N/A	N/A	Integrase core domain	rve
Pfam	UHGV-1459494_34	PF13683	N/A	N/A	Integrase core domain	rve_3
COG	UHGV-1459494_34	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1459494	Yes	24,069	52	52	1
UHGV-1642978	No	14,649	52	31	1