vOTU vOTU-035534

vOTU: vOTU-035534

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-035534
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-02146 → vGENUS-18482 → vOTU-035534
Host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1466046
Biosample ID	SAMEA2738043
Genome length (bp)	21,210 bps
CheckV completeness	61.34% (Medium-quality)
CDS count	27
CDS density	95.33%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	Total connections	1	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 61.34)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1466046_3	phrog_4188	48.6	0.000000000000083	N/A	unknown function
structural_annotation	UHGV-1466046_4	PF10957	N/A	N/A	N/A	N/A
UniRef90	UHGV-1466046_5	UniRef90_UPI000403EAB4	63.2	0.000000000198	N/A	N/A
UniRef90	UHGV-1466046_6	UniRef90_A0A2X4N3V1	176.0	0	RNA polymerase sigma factor, sigma-70 family	N/A
structural_annotation	UHGV-1466046_6	PF08281,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1466046_7	phrog_338	105.8	4.9e-31	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1466046_7	UniRef90_A0A2N6SCF6	213.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1466046_7	1321820.HMPREF1983_00938	188.0	0	HNH endonuclease	N/A
Pfam	UHGV-1466046_7	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1466046_7	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1466046_7	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1466046_8	phrog_104	299.3	0	portal protein	head and packaging
UniRef90	UHGV-1466046_8	UniRef90_A0A4J1ZT89	706.0	0	Gp34	N/A
eggNOG-mapper	UHGV-1466046_8	1321820.HMPREF1983_00937	850.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-1466046_8	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1466046_9	phrog_2494	319.5	0	minor head protein	head and packaging
UniRef90	UHGV-1466046_9	UniRef90_U2RW86	594.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1466046_9	1321820.HMPREF1983_00936	594.0	0	N/A	N/A
Pfam	UHGV-1466046_9	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
structural_annotation	UHGV-1466046_9	PF18451	N/A	N/A	N/A	N/A
PHROG	UHGV-1466046_10	phrog_17688	490.6	0	N/A	unknown function
UniRef90	UHGV-1466046_10	UniRef90_U2S4W8	889.0	0	Putative phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-1466046_10	1321820.HMPREF1983_00935	889.0	0	phage terminase, large subunit	N/A
COG	UHGV-1466046_10	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1466046_10	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1466046_11	phrog_233	119.3	4.1e-35	head scaffolding protein	head and packaging
UniRef90	UHGV-1466046_11	UniRef90_A0A2N6SCG6	228.0	0	Phage scaffold protein	N/A
eggNOG-mapper	UHGV-1466046_11	1321820.HMPREF1983_00934	197.0	0	N/A	N/A
structural_annotation	UHGV-1466046_11	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1466046_12	phrog_32396	166.8	0	N/A	unknown function
UniRef90	UHGV-1466046_12	UniRef90_A0A2N6SCF3	533.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1466046_12	1214184.ALKY01000039_gene918	492.0	0	Phage capsid family	N/A
Pfam	UHGV-1466046_12	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1466046_12	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1466046_12	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1466046_14	phrog_137	105.7	2.7e-31	head-tail adaptor Ad1	connector
UniRef90	UHGV-1466046_14	UniRef90_U2RW81	228.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-1466046_14	1321820.HMPREF1983_00931	228.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-1466046_14	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-1466046_14	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1466046_15	phrog_501	95.5	4e-28	head closure Hc1	connector
UniRef90	UHGV-1466046_15	UniRef90_A0A139QHM6	160.0	0	Phage-associated protein	N/A
eggNOG-mapper	UHGV-1466046_15	1321820.HMPREF1983_00930	198.0	0	N/A	N/A
structural_annotation	UHGV-1466046_15	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1466046_16	phrog_387	87.3	1.1e-25	neck protein	connector
UniRef90	UHGV-1466046_16	UniRef90_A0A380KNT4	85.9	1.98e-20	N/A	N/A
eggNOG-mapper	UHGV-1466046_16	1321820.HMPREF1983_00929	113.0	3.33e-32	N/A	N/A
PHROG	UHGV-1466046_17	phrog_123	64.7	1.5e-18	tail terminator	connector
UniRef90	UHGV-1466046_17	UniRef90_A0A0E4CTM5	129.0	1.68e-36	N/A	N/A
eggNOG-mapper	UHGV-1466046_17	1321820.HMPREF1983_00928	175.0	0	N/A	N/A
structural_annotation	UHGV-1466046_17	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1466046_18	phrog_117	175.1	0	major tail protein	tail
UniRef90	UHGV-1466046_18	UniRef90_U2QNN1	325.0	0	Prophage LambdaSa1, structural protein	N/A
eggNOG-mapper	UHGV-1466046_18	1321820.HMPREF1983_00927	325.0	0	domain, Protein	N/A
COG	UHGV-1466046_18	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1466046_18	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1466046_19	phrog_1526	104.6	4.9e-31	N/A	unknown function
UniRef90	UHGV-1466046_19	UniRef90_A0A4U9XM96	96.7	2.02e-24	N/A	N/A
eggNOG-mapper	UHGV-1466046_19	1321820.HMPREF1983_00926	129.0	2.82e-38	N/A	N/A
PHROG	UHGV-1466046_20	phrog_1633	173.5	0	N/A	unknown function
UniRef90	UHGV-1466046_20	UniRef90_A0A139NAW5	157.0	0	N/A	N/A
eggNOG-mapper	UHGV-1466046_20	1321820.HMPREF1983_00925	184.0	0	N/A	N/A
Pfam	UHGV-1466046_20	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-1466046_20	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-1466046_21	phrog_58	377.1	0	tail length tape measure protein	tail
UniRef90	UHGV-1466046_21	UniRef90_A0A2N6SDE9	978.0	0	PblA	N/A
eggNOG-mapper	UHGV-1466046_21	1321820.HMPREF1983_00924	863.0	0	Phage tail tape measure protein	N/A
COG	UHGV-1466046_21	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1466046_21	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-1466046_22	phrog_33	56.1	9.6e-16	distal tail protein Dit	tail
UniRef90	UHGV-1466046_22	UniRef90_A0A2N6SFF3	335.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1466046_22	1321820.HMPREF1983_00923	301.0	0	tail component	N/A
COG	UHGV-1466046_22	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1466046_22	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1466046_23	phrog_2270	476.3	0	N/A	unknown function
UniRef90	UHGV-1466046_23	UniRef90_UPI00094E93BE	401.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-1466046_23	1321820.HMPREF1983_00922	512.0	0	N/A	N/A
Pfam	UHGV-1466046_23	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1466046_23	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1466046_23	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-1466046_24	phrog_10693	113.7	0	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1466046_24	UniRef90_UPI00195A94EB	391.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1466046_24	562981.HMPREF0428_01809	366.0	0	N/A	N/A
Pfam	UHGV-1466046_24	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
PHROG	UHGV-1466046_25	phrog_1060	61.6	6.4e-18	N/A	unknown function
UniRef90	UHGV-1466046_25	UniRef90_A0A420YQX1	193.0	0	N/A	N/A
eggNOG-mapper	UHGV-1466046_25	1321820.HMPREF1983_00919	55.5	0.000000129	N/A	N/A
Pfam	UHGV-1466046_25	PF07104	N/A	N/A	N/A	DUF1366
structural_annotation	UHGV-1466046_25	PF07104,TIGR00638	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1466046_27	562981.HMPREF0428_00966	61.2	0.0000000000508	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1466046	Yes	21,210	34	61	1
UHGV-1837851	No	12,654	35	37	1