vOTU vOTU-035564

vOTU: vOTU-035564

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-035564
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00060 → vSUBFAM-03507 → vOTU-035564
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_F → Ruminococcus_F champanellensis
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0035451
Biosample ID	N/A
Genome length (bp)	32,967 bps
CheckV completeness	82.05% (Medium-quality)
CDS count	44
CDS density	95.88%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_F → Ruminococcus_F champanellensis	Total connections	20	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_F → Ruminococcus_F champanellensis	Total connections	9	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 82.05)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0035451_1	phrog_11237	85.2	7.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-0035451_1	641112.ACOK01000073_gene2886	139.0	2.45998e-41	N/A	N/A
structural_annotation	UHGV-0035451_1	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0035451_3	phrog_2412	41.5	0.000000000000049	N/A	unknown function
eggNOG-mapper	UHGV-0035451_3	1232449.BAHV02000018_gene1532	52.0	0.0000015	N/A	N/A
KOfam	UHGV-0035451_4	K06909	120.0	2.6e-35	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0035451_4	phrog_2	117.0	2.6e-34	terminase large subunit	head and packaging
UniRef90	UHGV-0035451_4	UniRef90_A0A1C6FMV1	615.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0035451_4	1120998.AUFC01000030_gene2231	358.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0035451_4	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0035451_4	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0035451_4	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0035451_4	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0035451_5	phrog_533	351.0	0	portal protein	head and packaging
UniRef90	UHGV-0035451_5	UniRef90_A0A349GP64	568.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0035451_5	428125.CLOLEP_01803	306.0	0	N/A	N/A
Pfam	UHGV-0035451_5	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0035451_5	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0035451_6	phrog_581	317.4	0	minor head protein	head and packaging
UniRef90	UHGV-0035451_6	UniRef90_A0A174ZWV0	464.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0035451_6	428125.CLOLEP_01802	261.0	0	N/A	N/A
Pfam	UHGV-0035451_6	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0035451_6	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035451_6	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0035451_8	phrog_2303	72.7	7.6e-21	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0035451_8	764299.STRIC_2530	66.2	0.0000000000524	N/A	N/A
PHROG	UHGV-0035451_9	phrog_267	71.2	2.9e-21	major head protein	head and packaging
UniRef90	UHGV-0035451_9	UniRef90_A0A1C6GMA6	494.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0035451_9	718252.FP2_06660	271.0	0	N/A	N/A
structural_annotation	UHGV-0035451_9	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0035451_10	phrog_541	75.3	7.5e-22	head-tail adaptor	connector
UniRef90	UHGV-0035451_10	UniRef90_R5RS10	65.1	0.0000000000517	Protein gp8	N/A
eggNOG-mapper	UHGV-0035451_10	665959.HMPREF1013_00198	55.8	0.0000000312	N/A	N/A
PHROG	UHGV-0035451_11	phrog_793	79.1	5e-23	head-tail adaptor	connector
UniRef90	UHGV-0035451_11	UniRef90_UPI00093A08E9	106.0	1.6e-27	putative minor capsid protein	N/A
eggNOG-mapper	UHGV-0035451_11	997296.PB1_16194	60.5	0.000000000239	Minor capsid protein	N/A
Pfam	UHGV-0035451_11	PF10665	N/A	N/A	Minor capsid protein	Minor_capsid_1
COG	UHGV-0035451_11	COG5652	N/A	N/A	VanZ-like family protein (function unknown)	N/A
structural_annotation	UHGV-0035451_11	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0035451_12	phrog_556	75.8	3.6e-22	minor head protein	head and packaging
UniRef90	UHGV-0035451_12	UniRef90_A0A7T9LSG3	80.1	1.07e-16	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0035451_12	935836.JAEL01000021_gene1490	57.0	0.0000000176	Minor capsid protein	N/A
Pfam	UHGV-0035451_12	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0035451_12	PF11114	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035451_13	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0035451_14	phrog_820	116.3	2e-34	major tail protein	tail
UniRef90	UHGV-0035451_14	UniRef90_A0A355UYH2	226.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0035451_14	1231057.AMGD01000018_gene3613	114.0	2.88e-29	Belongs to the glycosyl hydrolase family 6	N/A
Pfam	UHGV-0035451_14	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
COG	UHGV-0035451_14	COG5492	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035451_15	UniRef90_A0A143ZVS5	68.6	0.00000000000425	Cse1 domain-containing protein	N/A
structural_annotation	UHGV-0035451_15	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0035451_16	phrog_706	135.6	2.69999e-40	N/A	unknown function
UniRef90	UHGV-0035451_16	UniRef90_A0A143ZUS4	123.0	6.28e-32	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0035451_16	428125.CLOLEP_01787	101.0	2.56e-24	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0035451_16	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0035451_16	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0035451_17	phrog_1272	245.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0035451_17	UniRef90_UPI001C0A6D30	285.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0035451_17	428125.CLOLEP_00174	271.0	0	tail tape measure protein, TP901	N/A
Pfam	UHGV-0035451_17	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0035451_17	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0035451_17	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0035451_17	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0035451_18	phrog_33	53.9	0.0000000000000047	distal tail protein Dit	tail
UniRef90	UHGV-0035451_18	UniRef90_R5ADI0	99.0	1.21e-21	Putative phage tail component	N/A
eggNOG-mapper	UHGV-0035451_18	1121342.AUCO01000004_gene648	86.3	1.39e-17	tail component	N/A
COG	UHGV-0035451_18	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0035451_18	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0035451_20	phrog_1067	210.3	0	minor head protein	head and packaging
UniRef90	UHGV-0035451_20	UniRef90_UPI0011C788B1	744.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0035451_20	1567011.A0A0A7RUI9_9VIRU	189.0	0	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-0035451_20	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-0035451_20	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0035451_20	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-0035451_20	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0035451_22	1384066.JAGT01000001_gene1124	66.6	0.00000000000076	N/A	N/A
PHROG	UHGV-0035451_24	phrog_13256	69.7	2.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-0035451_24	641112.ACOK01000073_gene2912	73.2	1.22e-16	N/A	N/A
KOfam	UHGV-0035451_25	K08640	87.8	2.3e-28	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0035451_25	phrog_2649	85.0	8.1e-25	endolysin	lysis
UniRef90	UHGV-0035451_25	UniRef90_UPI0006D154CD	464.0	0	peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-0035451_25	1341157.RF007C_02545	159.0	6.30584e-44	hydrolase, family 25	N/A
Pfam	UHGV-0035451_25	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
Pfam	UHGV-0035451_25	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0035451_25	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035451_25	PF05951,PF01471,COG3108,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0035451_26	phrog_1863	68.6	5.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-0035451_26	1235797.C816_02840	98.6	1.52e-25	N/A	N/A
KOfam	UHGV-0035451_27	K14059	162.3	0	int; integrase	N/A
PHROG	UHGV-0035451_27	phrog_1	159.3	0	integrase	integration and excision
UniRef90	UHGV-0035451_27	UniRef90_A0A3C1H1U9	300.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0035451_27	887325.HMPREF0381_0346	267.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0035451_27	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0035451_27	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0035451_27	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0035451_28	411468.CLOSCI_02275	60.5	0.0000000801	N/A	N/A
structural_annotation	UHGV-0035451_28	PF14020	N/A	N/A	N/A	N/A
KOfam	UHGV-0035451_29	K01356	142.3	4.90034e-42	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0035451_29	phrog_4	134.5	9.6e-40	transcriptional repressor	transcription regulation
UniRef90	UHGV-0035451_29	UniRef90_D4LDS3	306.0	0	SOS-response transcriptional repressors (RecA-mediated autopeptidases)	N/A
eggNOG-mapper	UHGV-0035451_29	1121423.JONT01000002_gene2372	240.0	0	Peptidase S24-like	N/A
Pfam	UHGV-0035451_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0035451_29	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0035451_29	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0035451_29	PF00717,PF12844,MF_00015,TIGR00498,TIGR03070,COG1974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035451_30	UniRef90_UPI000FDA89FE	69.7	0.0000000000000314	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0035451_30	1410650.JHWL01000003_gene2856	46.6	0.00000644	N/A	N/A
structural_annotation	UHGV-0035451_30	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0035451_35	K00390	105.2	5.8e-32	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0035451_35	phrog_424	101.3	2.5e-30	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0035451_35	UniRef90_UPI001A9AFC23	599.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0035451_35	1291050.JAGE01000002_gene3264	493.0	0	sulfate reduction	N/A
Pfam	UHGV-0035451_35	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0035451_35	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0035451_35	PF01507,MF_00064,NF010367,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0035451_36	K03546	62.3	6.1e-18	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0035451_36	phrog_1499	462.8	0	N/A	unknown function
UniRef90	UHGV-0035451_36	UniRef90_A0A1C6E8X2	518.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0035451_36	1262914.BN533_01950	497.0	0	AAA domain	N/A
Pfam	UHGV-0035451_36	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0035451_36	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0035451_36	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0035451_38	phrog_124	218.1	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035451_38	UniRef90_UPI00048D6C48	424.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0035451_38	294382.Q5YA96_9CAUD	359.0	0	AAA domain	N/A
Pfam	UHGV-0035451_38	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0035451_38	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0035451_39	phrog_2698	176.5	0	N/A	unknown function
UniRef90	UHGV-0035451_39	UniRef90_UPI001D0882DA	190.0	0	N/A	N/A
eggNOG-mapper	UHGV-0035451_39	742723.HMPREF9477_00927	130.0	1.38e-36	N/A	N/A
structural_annotation	UHGV-0035451_39	PF17426,NF005674	N/A	N/A	N/A	N/A
KOfam	UHGV-0035451_40	K17677	366.3	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0035451_40	phrog_16	299.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035451_40	UniRef90_A0A412ULZ3	867.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-0035451_40	1235792.C808_05388	826.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0035451_40	mREase_IV_00005	141.1	9.80068e-42	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0035451_40	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0035451_40	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0035451_40	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0035451_40	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-0035451_41	K07505	359.1	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0035451_41	phrog_2597	1081.0	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035451_41	UniRef90_A0A1C6E992	939.0	0	Regulatory protein repA	N/A
eggNOG-mapper	UHGV-0035451_41	552396.HMPREF0863_02435	889.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0035451_41	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0035451_41	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0035451_41	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0035451_41	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0035451_42	K01160	43.8	0.0000000000069	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0035451_42	phrog_140	87.0	2.6e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035451_42	UniRef90_UPI000F52952D	205.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0035451_42	1235798.C817_03497	188.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0035451_42	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0035451_42	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0035451_42	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035451_43	PF08141,MF_00667,TIGR02861,COG0231	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0035451	Yes	32,967	52	82	1
UHGV-2047353	No	15,500	54	48	1