vOTU vOTU-035605

vOTU: vOTU-035605

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-035605
Number of genomes	4
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-00111 → vOTU-035605
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1470849
Biosample ID	SAMEA2580017
Genome length (bp)	30,580 bps
CheckV completeness	86.92% (Medium-quality)
CDS count	39
CDS density	92.21%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1858	Host agreement	86.76
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	93	Host agreement	96.77

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 86.92)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1470849_1	K14059	98.8	9e-29	int; integrase	N/A
PHROG	UHGV-1470849_1	phrog_1	117.3	1.9e-34	integrase	integration and excision
UniRef90	UHGV-1470849_1	UniRef90_A0A1G5CL52	793.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-1470849_1	693746.OBV_41260	180.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1470849_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1470849_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1470849_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1470849_2	UniRef90_UPI000E52DA24	727.0	0	zinc ribbon domain-containing protein	N/A
Pfam	UHGV-1470849_2	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
COG	UHGV-1470849_2	COG0457	N/A	N/A	Tetratricopeptide (TPR) repeat	N/A
structural_annotation	UHGV-1470849_2	PF18933,PF02883,MF_02248,NF008627,COG5435,COG2847	N/A	N/A	N/A	N/A
PHROG	UHGV-1470849_3	phrog_1914	144.3	7.00649e-43	N/A	unknown function
UniRef90	UHGV-1470849_3	UniRef90_UPI000E543E50	364.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1470849_3	1160721.RBI_I01604	174.0	0	N/A	N/A
Pfam	UHGV-1470849_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1470849_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1470849_3	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1470849_4	phrog_8	45.1	0.000000000002	transcriptional regulator	transcription regulation
UniRef90	UHGV-1470849_4	UniRef90_UPI0015F3DE1D	286.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1470849_4	663278.Ethha_2423	73.2	0.0000000000000185	sequence-specific DNA binding	N/A
Pfam	UHGV-1470849_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1470849_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1470849_4	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1470849_5	UniRef90_UPI000E51362F	130.0	1.26e-38	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1470849_5	411461.DORFOR_00030	51.2	0.0000000865	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1470849_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1470849_5	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1470849_7	phrog_585	115.0	4.9e-34	N/A	unknown function
UniRef90	UHGV-1470849_7	UniRef90_UPI00051C896C	143.0	1.32997e-41	N/A	N/A
eggNOG-mapper	UHGV-1470849_7	1033744.CAEL01000029_gene1306	128.0	4.7e-36	N/A	N/A
Pfam	UHGV-1470849_7	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-1470849_7	PF10711,MF_01819,TIGR03433,COG3432	N/A	N/A	N/A	N/A
KOfam	UHGV-1470849_9	K00390	101.0	1.2e-29	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1470849_9	phrog_424	126.9	1.5e-37	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1470849_9	UniRef90_UPI001C034617	590.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1470849_9	1408437.JNJN01000032_gene2312	341.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1470849_9	BrxP_00001	85.0	6.1e-25	BrxP	BREX
Pfam	UHGV-1470849_9	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1470849_9	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1470849_9	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1470849_10	phrog_8684	97.4	2.1e-29	N/A	unknown function
UniRef90	UHGV-1470849_10	UniRef90_UPI000E48855B	220.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-1470849_10	1450694.BTS2_0501	84.3	3.18e-19	YopX protein	N/A
Pfam	UHGV-1470849_10	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1470849_10	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1470849_10	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1470849_11	phrog_6058	42.4	0.0000000000077	N/A	unknown function
structural_annotation	UHGV-1470849_11	NF033787	N/A	N/A	N/A	N/A
KOfam	UHGV-1470849_13	K03497	159.0	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1470849_13	phrog_6218	249.7	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1470849_13	UniRef90_UPI000E47CAB6	805.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-1470849_13	394503.Ccel_3306	244.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-1470849_13	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-1470849_13	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-1470849_13	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
structural_annotation	UHGV-1470849_13	PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-1470849_15	phrog_323	81.9	4.6e-27	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1470849_15	UniRef90_UPI001C01CFF8	310.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-1470849_15	394503.Ccel_3305	338.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
Pfam	UHGV-1470849_15	PF00249	N/A	N/A	Myb-like DNA-binding domain	Myb_DNA-binding
dbAPIS	UHGV-1470849_15	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-1470849_15	PF11112,NF040595	N/A	N/A	N/A	N/A
KOfam	UHGV-1470849_16	K04763	205.8	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1470849_16	phrog_1	162.5	0	integrase	integration and excision
UniRef90	UHGV-1470849_16	UniRef90_UPI001B3C6404	382.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1470849_16	1235793.C809_01951	224.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1470849_16	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1470849_16	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1470849_16	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1470849_16	PF00589,PF13495,MF_01808,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-1470849_17	K07729	50.5	0.000000000000047	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1470849_17	phrog_8	60.7	3.8e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1470849_17	UniRef90_A0A374N9T4	103.0	9.99e-28	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1470849_17	935845.JADQ01000015_gene3206	63.2	0.00000000000927	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1470849_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1470849_17	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1470849_17	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1470849_18	phrog_24518	73.9	2.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-1470849_18	1519439.JPJG01000077_gene922	94.4	2.25e-21	N/A	N/A
PHROG	UHGV-1470849_19	phrog_824	145.7	1.4013e-43	N/A	unknown function
UniRef90	UHGV-1470849_19	UniRef90_A0A3D3D6C6	245.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1470849_19	397288.C806_00096	157.0	0	VRR_NUC	N/A
Pfam	UHGV-1470849_19	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1470849_19	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-1470849_22	phrog_3584	147.0	1.30321e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1470849_22	1235800.C819_00515	73.9	0.000000000000754	N/A	N/A
structural_annotation	UHGV-1470849_22	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-1470849_23	phrog_31049	40.5	0.00000000000031	N/A	unknown function
eggNOG-mapper	UHGV-1470849_23	431943.CKL_4074	52.4	0.00000119	N/A	N/A
structural_annotation	UHGV-1470849_23	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1470849_24	phrog_119	70.8	2e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1470849_24	UniRef90_A0A412ULY9	224.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1470849_24	1158607.UAU_01026	102.0	5.07e-27	HNH endonuclease	N/A
Pfam	UHGV-1470849_24	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1470849_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1470849_25	phrog_5110	82.7	3.2e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1470849_25	UniRef90_A0A1M5U1D5	114.0	8.42e-31	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1470849_25	86416.Clopa_0336	100.0	2.96e-26	N/A	N/A
Pfam	UHGV-1470849_25	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1470849_25	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1470849_26	phrog_9	301.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1470849_26	UniRef90_A0A412UM03	1009.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1470849_26	86416.Clopa_0337	634.0	0	Phage Terminase	N/A
Pfam	UHGV-1470849_26	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1470849_26	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1470849_26	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1470849_26	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1470849_27	phrog_12	96.0	3.2e-28	portal protein	head and packaging
UniRef90	UHGV-1470849_27	UniRef90_A0A412ULV9	745.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1470849_27	1415774.U728_1254	263.0	0	Phage portal protein	N/A
Pfam	UHGV-1470849_27	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1470849_27	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1470849_27	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1470849_27	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1470849_28	K01358	137.6	1.3e-40	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1470849_28	phrog_94	207.3	0	head maturation protease	head and packaging
UniRef90	UHGV-1470849_28	UniRef90_A0A412ULU1	462.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1470849_28	86416.Clopa_0340	176.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1470849_28	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1470849_28	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1470849_28	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1470849_29	phrog_10	129.7	3e-38	major head protein	head and packaging
UniRef90	UHGV-1470849_29	UniRef90_A0A412ULW9	739.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1470849_29	1211817.CCAT010000053_gene2132	322.0	0	Phage capsid family	N/A
Pfam	UHGV-1470849_29	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1470849_29	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1470849_29	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1470849_29	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1470849_30	phrog_749	55.0	0.0000000000000013	N/A	unknown function
UniRef90	UHGV-1470849_30	UniRef90_A0A1G5CMX8	106.0	8.67e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1470849_30	1211817.CCAT010000053_gene2133	59.7	0.000000000292	N/A	N/A
PHROG	UHGV-1470849_31	phrog_19734	75.3	7.1e-22	N/A	unknown function
UniRef90	UHGV-1470849_31	UniRef90_UPI00057FE645	59.3	0.00000000455	phage head closure protein	N/A
eggNOG-mapper	UHGV-1470849_31	86416.Clopa_0343	62.0	0.0000000000824	N/A	N/A
NCBIFam	UHGV-1470849_31	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1470849_31	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1470849_32	272623.L59277	51.6	0.0000006	N/A	N/A
structural_annotation	UHGV-1470849_32	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-1470849_33	UniRef90_UPI000E5564A4	270.0	0	HK97 gp10 family phage protein	N/A
Pfam	UHGV-1470849_33	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1470849_33	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1470849_34	phrog_88	76.1	4.5e-22	major tail protein	tail
UniRef90	UHGV-1470849_34	UniRef90_A0A1G5CNS8	154.0	6.86636e-44	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1470849_34	1235790.C805_00875	65.5	0.000000000157	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1470849_34	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1470849_34	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1470849_35	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-1470849_36	K20283	56.8	3.7e-17	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-1470849_36	phrog_1272	249.2	0	tail length tape measure protein	tail
UniRef90	UHGV-1470849_36	UniRef90_A0A412ULX0	1608.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1470849_36	588581.Cpap_1264	197.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1470849_36	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1470849_36	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1470849_36	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1470849_37	phrog_33	74.6	2.3e-21	distal tail protein Dit	tail
UniRef90	UHGV-1470849_37	UniRef90_A0A1G5CPA2	134.0	1.69e-34	Phage-related protein	N/A
eggNOG-mapper	UHGV-1470849_37	1444306.JFZC01000034_gene2623	90.1	8.87e-19	tail component	N/A
COG	UHGV-1470849_37	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1470849_37	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1470849_38	phrog_1067	96.3	1e-28	minor head protein	head and packaging
UniRef90	UHGV-1470849_38	UniRef90_A0A1G5CPD2	150.0	7.52e-38	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-1470849_38	1462527.CCDM010000003_gene3730	60.1	0.00000082	gp58-like protein	N/A
Pfam	UHGV-1470849_38	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1470849_38	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1470849_38	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1470849_38	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-1470849_39	UniRef90_A0A374N9Y2	220.0	0	N/A	N/A
structural_annotation	UHGV-1470849_39	PF10651	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1470849	Yes	30,580	40	87	1
UHGV-0188260	No	30,494	40	87	1
UHGV-0071133	No	30,445	40	87	1
UHGV-1991542	No	26,894	40	76	1