vOTU vOTU-035698

vOTU: vOTU-035698

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-035698
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00060 → vSUBFAM-00265 → vOTU-035698
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Clostridium_A → Clostridium_A leptum
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1476807
Biosample ID	SAMEA2159974
Genome length (bp)	18,304 bps
CheckV completeness	53.11% (Medium-quality)
CDS count	39
CDS density	86.55%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales	Total connections	11	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Clostridium_A → Clostridium_A leptum	Total connections	13	Host agreement	84.62

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 53.11)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1476807_2	phrog_36	83.5	2.9e-24	transcriptional regulator	transcription regulation
UniRef90	UHGV-1476807_2	UniRef90_A0A4Z0XVP8	149.0	1.09301e-43	RNA polymerase sigma factor SigO	N/A
eggNOG-mapper	UHGV-1476807_2	883112.HMPREF9707_01621	90.1	3.34e-21	N/A	N/A
Pfam	UHGV-1476807_2	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-1476807_2	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1476807_2	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1476807_7	phrog_7704	52.2	0.000000000000011	N/A	unknown function
UniRef90	UHGV-1476807_7	UniRef90_A0A412AWM4	147.0	5.60519e-45	N/A	N/A
Pfam	UHGV-1476807_7	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1476807_7	PF04448,NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1476807_8	phrog_22543	47.0	0.0000000000004	N/A	unknown function
UniRef90	UHGV-1476807_8	UniRef90_UPI001D08B1AD	53.9	0.000000533	Lar family restriction alleviation protein	N/A
PHROG	UHGV-1476807_9	phrog_23870	45.0	0.0000000000023	N/A	unknown function
UniRef90	UHGV-1476807_10	UniRef90_A0A8J6PM04	93.6	1.05e-23	N/A	N/A
structural_annotation	UHGV-1476807_10	NF041588	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1476807_11	PF17399	N/A	N/A	N/A	N/A
KOfam	UHGV-1476807_15	K01160	48.0	0.00000000000032	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1476807_15	phrog_140	108.9	4.1e-32	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1476807_15	UniRef90_A0A1C6HG31	281.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-1476807_15	411461.DORFOR_00015	121.0	2.73e-33	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1476807_15	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1476807_15	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1476807_15	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1476807_16	K02315	125.6	5.2e-37	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1476807_16	phrog_50	124.1	1.4e-36	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1476807_16	UniRef90_A0A1C6HFV4	491.0	0	DNA replication protein	N/A
eggNOG-mapper	UHGV-1476807_16	445972.ANACOL_01829	262.0	0	N/A	N/A
Pfam	UHGV-1476807_16	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1476807_16	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1476807_16	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1476807_17	phrog_2149	101.9	7.8e-30	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1476807_17	521460.Athe_2433	105.0	3.91e-23	N/A	N/A
structural_annotation	UHGV-1476807_17	PF01475,TIGR01610,COG0735	N/A	N/A	N/A	N/A
PHROG	UHGV-1476807_18	phrog_2113	50.1	0.000000000000028	N/A	unknown function
UniRef90	UHGV-1476807_18	UniRef90_A0A3A6EZF7	60.5	0.00000000169	HTH domain-containing protein	N/A
structural_annotation	UHGV-1476807_18	PF21715	N/A	N/A	N/A	N/A
KOfam	UHGV-1476807_19	K03111	148.6	5.74532e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1476807_19	phrog_44	150.3	8.40779e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1476807_19	UniRef90_A7VPP2	202.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1476807_19	428125.CLOLEP_00518	202.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1476807_19	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1476807_19	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1476807_19	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1476807_19	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1476807_19	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1476807_20	phrog_7566	86.1	2.5e-25	N/A	unknown function
UniRef90	UHGV-1476807_20	UniRef90_A0A371ATG2	57.0	0.0000000274	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-1476807_20	693746.OBV_25470	109.0	1.39e-29	N/A	N/A
PHROG	UHGV-1476807_21	phrog_1389	73.4	2.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-1476807_21	1347392.CCEZ01000060_gene3269	99.8	8.78e-26	N/A	N/A
structural_annotation	UHGV-1476807_21	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-1476807_22	phrog_14970	240.0	0	N/A	unknown function
UniRef90	UHGV-1476807_22	UniRef90_UPI00164BFA28	200.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-1476807_22	642492.Clole_0944	185.0	0	double-strand break repair protein	N/A
Pfam	UHGV-1476807_22	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-1476807_22	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1476807_22	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-1476807_28	K07482	45.1	0.0000000000013	K07482; transposase, IS30 family	N/A
PHROG	UHGV-1476807_28	phrog_11420	100.6	6.9e-30	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1476807_28	UniRef90_A0A412AWF5	166.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1476807_28	1519439.JPJG01000077_gene919	125.0	8.15e-37	Helix-turn-helix domain	N/A
Pfam	UHGV-1476807_28	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
structural_annotation	UHGV-1476807_28	PF04218	N/A	N/A	N/A	N/A
KOfam	UHGV-1476807_29	K07482	310.5	0	K07482; transposase, IS30 family	N/A
PHROG	UHGV-1476807_29	phrog_4646	384.0	0	transposase	integration and excision
UniRef90	UHGV-1476807_29	UniRef90_R6N1U4	667.0	0	Integrase catalytic domain-containing protein	N/A
eggNOG-mapper	UHGV-1476807_29	411459.RUMOBE_01705	378.0	0	COG COG2826 Transposase and inactivated derivatives, IS30 family	N/A
Pfam	UHGV-1476807_29	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
NCBIFam	UHGV-1476807_29	NF033563.0	N/A	N/A	IS30 family transposase	N/A
COG	UHGV-1476807_29	COG2826	N/A	N/A	Transposase and inactivated derivatives, IS30 family	N/A
structural_annotation	UHGV-1476807_29	PF03400,PF13384,NF033563,COG2826	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1476807_30	PF09274,NF008671,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-1476807_31	K22300	50.5	0.000000000000045	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-1476807_31	UniRef90_R6P7W0	150.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1476807_31	1235797.C816_02851	106.0	2.27e-29	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1476807_31	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1476807_31	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1476807_31	PF13560,NF041951,COG1813	N/A	N/A	N/A	N/A
KOfam	UHGV-1476807_32	K19370	45.3	0.00000000000081	DNAJC22; DnaJ homolog subfamily C member 22	N/A
PHROG	UHGV-1476807_32	phrog_10292	63.6	1.5e-18	N/A	unknown function
UniRef90	UHGV-1476807_32	UniRef90_R6NCF6	258.0	0	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1476807_32	537013.CLOSTMETH_02269	96.7	5.57e-24	TM2 domain	N/A
Pfam	UHGV-1476807_32	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-1476807_32	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-1476807_32	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-1476807_33	K18831	124.7	9.2e-37	higA; HTH-type transcriptional regulator / antitoxin HigA	N/A
PHROG	UHGV-1476807_33	phrog_2439	139.5	1.70006e-41	transcriptional regulator	transcription regulation
UniRef90	UHGV-1476807_33	UniRef90_A0A358PEU0	474.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1476807_33	335541.Swol_0483	460.0	0	Addiction module antidote protein, HigA	N/A
Pfam	UHGV-1476807_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1476807_33	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1476807_33	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1476807_33	PF12844,MF_00535,TIGR02607,COG3093,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-1476807_34	K07334	43.7	0.0000000000045	higB-1; toxin HigB-1	N/A
PHROG	UHGV-1476807_34	phrog_3066	53.9	0.0000000000000025	toxin of TA system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1476807_34	UniRef90_UPI00145B793B	126.0	6.06e-36	type II toxin-antitoxin system RelE/ParE family toxin	N/A
eggNOG-mapper	UHGV-1476807_34	1410674.JNKU01000019_gene173	116.0	9.25e-33	Plasmid maintenance system killer	N/A
Pfam	UHGV-1476807_34	PF05015	N/A	N/A	RelE-like toxin of type II toxin-antitoxin system HigB	HigB-like_toxin
COG	UHGV-1476807_34	COG3549	N/A	N/A	Plasmid maintenance system killer protein	N/A
structural_annotation	UHGV-1476807_34	PF05015,TIGR02385,COG3549	N/A	N/A	N/A	N/A
PHROG	UHGV-1476807_35	phrog_297	57.2	3e-16	holin	lysis
UniRef90	UHGV-1476807_35	UniRef90_A7VT88	188.0	0	Holin, phage phi LC3 family	N/A
eggNOG-mapper	UHGV-1476807_35	428125.CLOLEP_01780	188.0	0	COG COG5546 Small integral membrane protein	N/A
Pfam	UHGV-1476807_35	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1476807_35	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1476807_35	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1476807_35	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-1476807_36	phrog_1863	87.4	7.4e-26	N/A	unknown function
UniRef90	UHGV-1476807_36	UniRef90_A0A2K9NYV1	88.2	2e-21	Holin	N/A
eggNOG-mapper	UHGV-1476807_36	428125.CLOLEP_01781	124.0	1.92e-36	N/A	N/A
KOfam	UHGV-1476807_37	K01447	103.1	3.9e-30	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1476807_37	phrog_3088	251.9	0	amidase	lysis
UniRef90	UHGV-1476807_37	UniRef90_A0A412AXM4	598.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-1476807_37	428125.CLOLEP_00171	605.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1476807_37	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1476807_37	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1476807_37	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1476807_38	phrog_7121	178.3	0	tail fiber protein	tail
UniRef90	UHGV-1476807_38	UniRef90_A0A1C6HHX6	459.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1476807_38	428125.CLOLEP_00172	423.0	0	COG COG5295 Autotransporter adhesin	N/A
Pfam	UHGV-1476807_38	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1476807	Yes	18,304	43	53	1
UHGV-0057252	No	15,404	42	45	1
UHGV-1772635	No	15,404	42	45	1