vOTU vOTU-035705

vOTU: vOTU-035705

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-035705
Number of genomes	4
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → CAG-115 → CAG-115 sp003507295
Taxonomy (UHGV)	vFAM-00060 → vSUBFAM-01202 → vGENUS-04898 → vOTU-035705
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → CAG-115 → CAG-115 sp003507295
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1477158
Biosample ID	SAMEA3879562
Genome length (bp)	32,002 bps
CheckV completeness	83.77% (Medium-quality)
CDS count	47
CDS density	93.74%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus agalactiae	Total connections	4	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → CAG-115 → CAG-115 sp003507295	Total connections	29	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 83.77)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1477158_1	K01447	58.9	1e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1477158_1	phrog_15001	114.9	7.9e-34	endolysin	lysis
UniRef90	UHGV-1477158_1	UniRef90_R5H0D9	391.0	0	N-acetylmuramoyl-L-alanine amidase domain protein	N/A
eggNOG-mapper	UHGV-1477158_1	552398.HMPREF0866_01156	144.0	1.65e-39	Ami_2	N/A
Pfam	UHGV-1477158_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1477158_1	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1477158_1	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1477158_2	1321784.HMPREF1987_01091	60.5	0.0000000000259	N/A	N/A
NCBIFam	UHGV-1477158_3	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-1477158_3	NF040910	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1477158_4	PF17642,MF_01370,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1477158_6	478749.BRYFOR_07634	57.4	0.00000148	tail collar domain protein	N/A
COG	UHGV-1477158_6	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-1477158_7	phrog_6616	69.0	1.8e-20	tail protein	tail
eggNOG-mapper	UHGV-1477158_7	862517.HMPREF9225_0493	67.8	0.00000000418	N/A	N/A
structural_annotation	UHGV-1477158_7	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1477158_8	phrog_1194	48.3	0.00000000000016	N/A	unknown function
structural_annotation	UHGV-1477158_8	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1477158_9	phrog_1272	197.7	0	tail length tape measure protein	tail
UniRef90	UHGV-1477158_9	UniRef90_A0A3D4L2Y5	862.0	0	PhageMin_Tail domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-1477158_9	411468.CLOSCI_00278	235.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-1477158_9	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1477158_9	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1477158_9	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1477158_9	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1477158_10	phrog_706	128.6	4e-38	N/A	unknown function
UniRef90	UHGV-1477158_10	UniRef90_F2JQ13	122.0	1.3e-31	Gp15 family protein	N/A
eggNOG-mapper	UHGV-1477158_10	645991.Sgly_0348	153.0	9.80909e-45	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1477158_10	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1477158_10	PF06854	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1477158_11	PF20378	N/A	N/A	N/A	N/A
NCBIFam	UHGV-1477158_12	NF038353.1	N/A	N/A	FxLYD domain-containing protein	N/A
PHROG	UHGV-1477158_13	phrog_3099	78.5	6.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-1477158_13	632245.CLP_1654	72.8	0.00000000000237	N/A	N/A
Pfam	UHGV-1477158_13	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
PHROG	UHGV-1477158_14	phrog_3266	84.3	1.1e-24	tail completion	connector
eggNOG-mapper	UHGV-1477158_14	525255.HMPREF0077_0380	62.8	0.000000000159	N/A	N/A
structural_annotation	UHGV-1477158_14	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1477158_15	phrog_556	92.0	4e-27	minor head protein	head and packaging
UniRef90	UHGV-1477158_15	UniRef90_D4LDZ5	91.7	2.53e-21	Minor capsid	N/A
eggNOG-mapper	UHGV-1477158_15	411470.RUMGNA_02222	84.7	2.14e-19	N/A	N/A
Pfam	UHGV-1477158_15	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1477158_15	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1477158_16	phrog_3366	94.3	1.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-1477158_16	645991.Sgly_0343	78.2	9.64e-17	N/A	N/A
Pfam	UHGV-1477158_16	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1477158_16	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1477158_17	phrog_541	94.4	8.7e-28	head-tail adaptor	connector
eggNOG-mapper	UHGV-1477158_17	641112.ACOK01000073_gene2896	71.2	0.0000000000000399	N/A	N/A
PHROG	UHGV-1477158_18	phrog_422	316.5	0	major head protein	head and packaging
UniRef90	UHGV-1477158_18	UniRef90_A3DIA2	351.0	0	N/A	N/A
eggNOG-mapper	UHGV-1477158_18	1121335.Clst_0392	360.0	0	N/A	N/A
structural_annotation	UHGV-1477158_18	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1477158_19	phrog_194	65.6	9.1e-19	head scaffolding protein	head and packaging
UniRef90	UHGV-1477158_19	UniRef90_UPI00117868A2	71.6	0.00000000000379	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1477158_19	545697.HMPREF0216_02848	67.8	0.0000000000188	Phage minor structural protein GP20	N/A
Pfam	UHGV-1477158_19	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1477158_19	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1477158_22	phrog_581	293.8	0	minor head protein	head and packaging
UniRef90	UHGV-1477158_22	UniRef90_A0A1C6GGW2	294.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1477158_22	1292035.H476_1017	274.0	0	N/A	N/A
Pfam	UHGV-1477158_22	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1477158_22	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1477158_22	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1477158_23	phrog_533	244.9	0	portal protein	head and packaging
UniRef90	UHGV-1477158_23	UniRef90_R5H044	456.0	0	Phage portal protein putative A118 family	N/A
eggNOG-mapper	UHGV-1477158_23	883114.HMPREF9709_01198	145.0	1.1e-35	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-1477158_23	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1477158_24	K06909	135.9	3.9e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1477158_24	phrog_2	138.9	5.99994e-41	terminase large subunit	head and packaging
UniRef90	UHGV-1477158_24	UniRef90_A0A355JEL9	398.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1477158_24	592031.GCWU000322_00074	243.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1477158_24	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1477158_24	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1477158_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1477158_24	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1477158_25	phrog_309	45.3	0.00000000000074	terminase small subunit	head and packaging
eggNOG-mapper	UHGV-1477158_25	1160721.RBI_II00544	57.4	0.0000000292	N/A	N/A
structural_annotation	UHGV-1477158_25	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-1477158_26	K02601	56.3	5e-16	nusG; transcription termination/antitermination protein NusG	N/A
PHROG	UHGV-1477158_26	phrog_6386	87.4	1.4e-25	transcription antiterminator	transcription regulation
UniRef90	UHGV-1477158_26	UniRef90_A0A174ZTH1	111.0	6.13e-28	Transcription termination factor nusG	N/A
eggNOG-mapper	UHGV-1477158_26	402626.Rpic_3319	55.1	0.000000606	Participates in transcription elongation, termination and antitermination	N/A
Pfam	UHGV-1477158_26	PF02357	N/A	N/A	Transcription termination factor nusG	NusG
COG	UHGV-1477158_26	COG0250	N/A	N/A	Transcription termination/antitermination protein NusG	N/A
structural_annotation	UHGV-1477158_26	PF02357,MF_00951,NF033641,COG0250	N/A	N/A	N/A	N/A
PHROG	UHGV-1477158_27	phrog_426	79.8	4.4e-23	terminase small subunit	head and packaging
UniRef90	UHGV-1477158_27	UniRef90_R5GR06	332.0	0	PF11985 family protein	N/A
eggNOG-mapper	UHGV-1477158_27	1160721.RBI_II00546	164.0	0	N/A	N/A
Pfam	UHGV-1477158_27	PF11985	N/A	N/A	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
structural_annotation	UHGV-1477158_27	PF11985	N/A	N/A	N/A	N/A
PHROG	UHGV-1477158_28	phrog_25462	109.7	1.3e-32	N/A	unknown function
UniRef90	UHGV-1477158_28	UniRef90_A0A374RXS9	76.6	6.4e-16	Type VI secretion protein	N/A
eggNOG-mapper	UHGV-1477158_28	1160721.RBI_II00547	91.7	1.17e-22	N/A	N/A
structural_annotation	UHGV-1477158_28	PF01638,MF_01819,NF002926,COG1733	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1477158_29	411473.RUMCAL_01917	57.4	0.0000000041	N/A	N/A
PHROG	UHGV-1477158_30	phrog_836	43.6	0.0000000000047	late transcriptional activator	transcription regulation
UniRef90	UHGV-1477158_30	UniRef90_A0A2V2FGZ8	55.1	0.0000000752	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1477158_30	411471.SUBVAR_07004	53.9	0.0000000356	Mor transcription activator	N/A
COG	UHGV-1477158_30	COG5566	N/A	N/A	Transcriptional regulator, middle operon regulator (Mor) family	N/A
structural_annotation	UHGV-1477158_30	PF08765,NF040785,COG5566	N/A	N/A	N/A	N/A
PHROG	UHGV-1477158_31	phrog_286	40.8	0.000000000039	N/A	unknown function
UniRef90	UHGV-1477158_31	UniRef90_UPI000F51F9E5	68.9	0.0000000000115	regulatory protein GemA	N/A
eggNOG-mapper	UHGV-1477158_31	1160721.RBI_II00550	65.5	0.0000000000503	N/A	N/A
Pfam	UHGV-1477158_31	PF06252	N/A	N/A	Bacteriophage Mu, GemA protein	GemA
structural_annotation	UHGV-1477158_31	PF06252	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1477158_32	1160721.RBI_II00551	118.0	2.18e-30	N/A	N/A
UniRef90	UHGV-1477158_33	UniRef90_R5GQZ8	149.0	1.4013e-45	Putative SpoVT / AbrB like domain protein	N/A
eggNOG-mapper	UHGV-1477158_33	552398.HMPREF0866_03129	61.2	0.0000000000254	SpoVT / AbrB like domain	N/A
Pfam	UHGV-1477158_33	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
COG	UHGV-1477158_33	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
structural_annotation	UHGV-1477158_33	PF04014,PF06689,MF_01364_A,TIGR01439,NF004424,COG2002	N/A	N/A	N/A	N/A
KOfam	UHGV-1477158_35	K02315	162.3	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1477158_35	phrog_50	147.9	6.44597e-44	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1477158_35	UniRef90_R5H034	524.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-1477158_35	796942.HMPREF9623_00441	199.0	0	N/A	N/A
Pfam	UHGV-1477158_35	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-1477158_35	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-1477158_35	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1477158_35	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1477158_36	phrog_19658	80.9	1.5e-23	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1477158_36	742740.HMPREF9474_03492	86.7	1.31e-18	DnaD domain protein	N/A
COG	UHGV-1477158_36	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1477158_37	phrog_5671	102.0	4.4e-30	N/A	unknown function
eggNOG-mapper	UHGV-1477158_37	696281.Desru_1771	111.0	6.6e-30	N/A	N/A
PHROG	UHGV-1477158_39	phrog_4292	72.0	4.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-1477158_39	743719.PaelaDRAFT_5640	63.2	0.000000000000653	N/A	N/A
KOfam	UHGV-1477158_40	K02450	69.0	5.3e-20	gspA; general secretion pathway protein A	N/A
PHROG	UHGV-1477158_40	phrog_296	131.8	6e-39	DNA transposition protein	integration and excision
UniRef90	UHGV-1477158_40	UniRef90_A0A175A3H1	324.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-1477158_40	1160721.RBI_II00554	238.0	0	AAA domain	N/A
Pfam	UHGV-1477158_40	PF13401	N/A	N/A	AAA domain	AAA_22
COG	UHGV-1477158_40	COG2842	N/A	N/A	Bacteriophage DNA transposition protein, AAA+ family ATPase	N/A
structural_annotation	UHGV-1477158_40	PF13401,MF_01407,TIGR03015,COG2842	N/A	N/A	N/A	N/A
PHROG	UHGV-1477158_41	phrog_310	342.2	0	transposase	integration and excision
UniRef90	UHGV-1477158_41	UniRef90_R5H7J6	1263.0	0	Integrase core domain protein	N/A
eggNOG-mapper	UHGV-1477158_41	1160721.RBI_II00555	621.0	0	Mu transposase, C-terminal	N/A
PADLOC	UHGV-1477158_41	TnsB_0_V-K	70.9	5.8e-21	TnsB_0_V-K	CRISPR-CAS
Pfam	UHGV-1477158_41	PF09039	N/A	N/A	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
Pfam	UHGV-1477158_41	PF02914	N/A	N/A	Bacteriophage Mu transposase	DDE_2
Pfam	UHGV-1477158_41	PF09299	N/A	N/A	Mu transposase, C-terminal	Mu-transpos_C
COG	UHGV-1477158_41	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-1477158_41	PF02914,PF09039,PF09299,PF21531,NF033594,TIGR01764,COG3316,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-1477158_45	K22300	59.8	6.3e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1477158_45	phrog_8	63.9	3.4e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1477158_45	UniRef90_A0A1Q6QB07	61.2	0.000000000103	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1477158_45	887929.HMP0721_2155	58.5	0.00000000124	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-1477158_45	retron_type_VI_hth_cluster2_1	41.4	0.000000000037	N/A	Retron
Pfam	UHGV-1477158_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1477158_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1477158_45	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1477158_46	K01356	81.0	2e-23	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1477158_46	phrog_4	108.7	4.5e-32	transcriptional repressor	transcription regulation
UniRef90	UHGV-1477158_46	UniRef90_A0A175A412	194.0	0	LexA repressor	N/A
eggNOG-mapper	UHGV-1477158_46	1160721.RBI_II00559	120.0	2.15e-30	Peptidase S24-like	N/A
Pfam	UHGV-1477158_46	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1477158_46	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1477158_46	PF00717,PF01381,MF_00015,NF007621,NF041951,COG2932	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1477158	Yes	32,002	52	84	1
UHGV-0159910	No	11,419	54	23	1
UHGV-1626308	No	11,419	54	23	1
UHGV-0334899	No	11,246	54	23	1