vOTU vOTU-036110

vOTU: vOTU-036110

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-036110
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-00261 → vGENUS-08275 → vOTU-036110
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1529209
Biosample ID	SAMEA2338833
Genome length (bp)	26,343 bps
CheckV completeness	71.35% (Medium-quality)
CDS count	40
CDS density	93.34%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	161	Host agreement	93.79
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103 → CAG-103 sp000432375	Total connections	33	Host agreement	90.91

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 71.35)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1529209_1	K14059	150.9	1.54143e-44	int; integrase	N/A
PHROG	UHGV-1529209_1	phrog_1	150.8	1.26117e-44	integrase	integration and excision
UniRef90	UHGV-1529209_1	UniRef90_A0A2Z4QB94	334.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1529209_1	626523.GCWU000342_00320	94.0	7.85e-19	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1529209_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1529209_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1529209_1	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1529209_3	K22300	63.0	7.1e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1529209_3	phrog_4	49.4	0.00000000000011	transcriptional repressor	transcription regulation
UniRef90	UHGV-1529209_3	UniRef90_K1UM29	151.0	3.92364e-44	Helix-turn-helix domain protein (Fragment)	N/A
eggNOG-mapper	UHGV-1529209_3	903814.ELI_1263	123.0	1.03e-34	Helix-turn-helix domain	N/A
Pfam	UHGV-1529209_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1529209_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1529209_3	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1529209_7	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1529209_8	phrog_4433	165.1	0	N/A	unknown function
UniRef90	UHGV-1529209_8	UniRef90_A0A6M5C839	123.0	1.66e-31	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-1529209_8	645991.Sgly_0315	161.0	1.4013e-45	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1529209_8	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1529209_8	NF007410	N/A	N/A	N/A	N/A
Pfam	UHGV-1529209_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1529209_10	PF13744,NF007481,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1529209_11	K00558	158.2	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1529209_11	phrog_116	202.0	0	DNA methyltransferase	other
UniRef90	UHGV-1529209_11	UniRef90_A0A1C5KYC3	347.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1529209_11	718252.FP2_16350	346.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1529209_11	oMTase_00004	203.6	0	orphan methyltransferase	RM
Pfam	UHGV-1529209_11	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1529209_11	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1529209_11	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1529209_11	PF00145,TIGR00675	N/A	N/A	N/A	N/A
PHROG	UHGV-1529209_14	phrog_14970	255.8	0	N/A	unknown function
UniRef90	UHGV-1529209_14	UniRef90_A0A3P6JH63	215.0	0	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-1529209_14	411470.RUMGNA_02193	219.0	0	double-strand break repair protein	N/A
Pfam	UHGV-1529209_14	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-1529209_14	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1529209_14	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-1529209_15	K03111	76.1	8.5e-22	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1529209_15	phrog_44	67.5	3.3e-19	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1529209_15	UniRef90_A0A4Z0CEI8	59.7	0.0000000473	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1529209_15	1074488.AGBX01000001_gene892	56.6	0.0000001	Single-strand binding protein family	N/A
Pfam	UHGV-1529209_15	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-1529209_15	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1529209_15	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1529209_16	phrog_8489	205.9	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1529209_16	UniRef90_A0A022N9G2	206.0	0	Replisome organizer	N/A
eggNOG-mapper	UHGV-1529209_16	1139219.I569_01402	192.0	0	DnaD domain protein	N/A
COG	UHGV-1529209_16	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1529209_16	PF09681,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-1529209_17	phrog_1770	52.3	0.000000000000011	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1529209_17	536233.CLO_1822	124.0	8.32e-34	N/A	N/A
structural_annotation	UHGV-1529209_17	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
UniRef90	UHGV-1529209_18	UniRef90_UPI001A9B9FB4	254.0	0	FAD-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-1529209_18	742735.HMPREF9467_00909	198.0	0	N/A	N/A
Pfam	UHGV-1529209_18	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
structural_annotation	UHGV-1529209_18	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-1529209_21	phrog_38832	48.5	8.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-1529209_21	1232443.BAIA02000078_gene48	125.0	2.12e-35	N/A	N/A
PHROG	UHGV-1529209_23	phrog_22543	41.3	0.000000000024	N/A	unknown function
UniRef90	UHGV-1529209_23	UniRef90_A0A8D9PDK2	63.9	0.0000000000381	Zinc-ribbon containing domain	N/A
KOfam	UHGV-1529209_27	K03091	45.4	0.0000000000014	sigH; RNA polymerase sporulation-specific sigma factor	N/A
UniRef90	UHGV-1529209_27	UniRef90_A0A5C7QA78	61.2	0.0000000457	Sigma-70 family RNA polymerase sigma factor	N/A
Pfam	UHGV-1529209_27	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-1529209_27	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
NCBIFam	UHGV-1529209_27	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-1529209_27	COG0568	N/A	N/A	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	N/A
structural_annotation	UHGV-1529209_27	PF04542,MF_00961,TIGR02835,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1529209_29	phrog_474	55.0	0.0000000000000025	phosphofructokinase	other
UniRef90	UHGV-1529209_29	UniRef90_K1TIM3	134.0	2.6e-38	N/A	N/A
eggNOG-mapper	UHGV-1529209_29	1203606.HMPREF1526_00237	59.7	0.000000000772	N/A	N/A
Pfam	UHGV-1529209_29	PF19905	N/A	N/A	N/A	DUF6378
eggNOG-mapper	UHGV-1529209_30	1519439.JPJG01000011_gene53	374.0	0	N/A	N/A
eggNOG-mapper	UHGV-1529209_31	693746.OBV_01600	87.0	7.21e-16	N/A	N/A
eggNOG-mapper	UHGV-1529209_32	33035.JPJF01000023_gene3222	47.8	0.00000471	N/A	N/A
PHROG	UHGV-1529209_33	phrog_962	81.4	1.2e-23	holin	lysis
UniRef90	UHGV-1529209_33	UniRef90_A0A3R5XPP7	106.0	1.75e-28	Phage holin	N/A
eggNOG-mapper	UHGV-1529209_33	553973.CLOHYLEM_04415	99.0	3.77e-26	Bacteriophage holin	N/A
Pfam	UHGV-1529209_33	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1529209_33	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1529209_33	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1529209_33	COG5546	N/A	N/A	N/A	N/A
KOfam	UHGV-1529209_34	K01447	123.4	2.6e-36	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1529209_34	phrog_9611	145.0	5.00264e-43	endolysin	lysis
UniRef90	UHGV-1529209_34	UniRef90_R5B1Z3	401.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-1529209_34	97138.C820_00251	219.0	0	Ami_2	N/A
Pfam	UHGV-1529209_34	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1529209_34	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1529209_34	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
UniRef90	UHGV-1529209_35	UniRef90_UPI001BF10870	244.0	0	Tyrosine-protein phosphatase	N/A
eggNOG-mapper	UHGV-1529209_35	610130.Closa_0587	84.0	0.00000000000000259	Tyrosine phosphatase family	N/A
Pfam	UHGV-1529209_35	PF13350	N/A	N/A	Tyrosine phosphatase family	Y_phosphatase3
COG	UHGV-1529209_35	COG2365	N/A	N/A	Protein tyrosine/serine phosphatase Oca4	N/A
structural_annotation	UHGV-1529209_35	PF13350,PF18998,PF17425,TIGR01244,COG2365	N/A	N/A	N/A	N/A
PHROG	UHGV-1529209_36	phrog_12105	88.6	5e-26	N/A	unknown function
eggNOG-mapper	UHGV-1529209_36	1519439.JPJG01000060_gene1891	60.1	0.00000000692	N/A	N/A
PHROG	UHGV-1529209_37	phrog_15239	67.0	2.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-1529209_37	1507.HMPREF0262_03462	58.9	0.000000000227	N/A	N/A
PHROG	UHGV-1529209_38	phrog_1357	258.5	0	major head protein	head and packaging
UniRef90	UHGV-1529209_38	UniRef90_UPI001D02EBA7	452.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1529209_38	1449126.JQKL01000003_gene1695	388.0	0	N/A	N/A
Pfam	UHGV-1529209_38	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1529209_38	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1529209_38	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1529209_39	phrog_4478	44.2	0.0000000000027	peptidase	other
Pfam	UHGV-1529209_39	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-1529209_39	PF04327,NF011132,COG2868	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1529209	Yes	26,343	59	71	1
UHGV-0064763	No	26,837	59	73	1
UHGV-1505727	No	21,089	58	57	1