vOTU vOTU-036129

vOTU: vOTU-036129

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-036129
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vOTU-036129
Host lineage
Host range breadth
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0051843
Biosample ID	SAMEA2155902
Genome length (bp)	32,395 bps
CheckV completeness	67.66% (Medium-quality)
CDS count	52
CDS density	92.26%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 67.66)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0051843_4	UniRef90_C9L7N2	57.8	0.00000000141	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0051843_4	887325.HMPREF0381_1083	49.3	0.000000764	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0051843_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0051843_4	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0051843_5	phrog_38	180.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0051843_5	UniRef90_A0A318EQM2	238.0	0	Putative phage terminase large subunit-like protein	N/A
eggNOG-mapper	UHGV-0051843_5	476272.RUMHYD_01940	234.0	0	TIGRFAM Phage	N/A
COG	UHGV-0051843_5	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0051843_5	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0051843_6	phrog_64	178.9	0	portal protein	head and packaging
UniRef90	UHGV-0051843_6	UniRef90_A0A3D3Y472	276.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0051843_6	1121866.AUGK01000003_gene1429	242.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0051843_6	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0051843_6	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0051843_7	phrog_595	51.5	0.000000000000016	head maturation protease	head and packaging
Pfam	UHGV-0051843_7	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0051843_7	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0051843_7	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0051843_9	phrog_544	54.7	1.5e-17	major head protein	head and packaging
eggNOG-mapper	UHGV-0051843_9	428127.EUBDOL_01555	229.0	0	N/A	N/A
structural_annotation	UHGV-0051843_9	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0051843_10	1203606.HMPREF1526_01905	71.2	0.00000000000000326	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0051843_10	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
PHROG	UHGV-0051843_11	phrog_132	46.5	0.00000000000058	head-tail adaptor	connector
UniRef90	UHGV-0051843_11	UniRef90_UPI0018A0DAC6	82.4	2.4e-18	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0051843_11	1298920.KI911353_gene2658	53.1	0.000000126	N/A	N/A
Pfam	UHGV-0051843_11	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0051843_11	TIGR01560	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0051843_12	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0051843_14	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0051843_15	phrog_158	55.8	9.6e-16	major tail protein	tail
UniRef90	UHGV-0051843_15	UniRef90_UPI001D087591	130.0	2.69e-36	phage tail protein	N/A
eggNOG-mapper	UHGV-0051843_15	1232453.BAIF02000058_gene1634	112.0	6.22e-30	N/A	N/A
structural_annotation	UHGV-0051843_15	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0051843_16	UniRef90_A0A496N7D3	84.7	3.57e-19	N/A	N/A
eggNOG-mapper	UHGV-0051843_16	1211844.CBLM010000023_gene988	75.1	3.54e-16	N/A	N/A
Pfam	UHGV-0051843_16	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0051843_16	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0051843_17	1121333.JMLH01000047_gene1011	69.7	0.000000000000153	N/A	N/A
PHROG	UHGV-0051843_18	phrog_1535	144.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0051843_18	UniRef90_A0A3D9GHV1	174.0	3.83998e-41	Phage-related protein	N/A
eggNOG-mapper	UHGV-0051843_18	1499683.CCFF01000014_gene3900	178.0	2.60642e-43	phage tail tape measure protein	N/A
COG	UHGV-0051843_18	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0051843_19	phrog_1194	76.6	2.8e-22	N/A	unknown function
eggNOG-mapper	UHGV-0051843_19	1007103.AFHW01000096_gene3257	71.2	0.0000000000000238	N/A	N/A
Pfam	UHGV-0051843_19	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0051843_19	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0051843_20	phrog_18190	117.4	0	N/A	unknown function
UniRef90	UHGV-0051843_20	UniRef90_A0A6L5Y189	148.0	1.9e-33	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0051843_20	1235790.C805_00089	116.0	5.95e-24	N/A	N/A
structural_annotation	UHGV-0051843_20	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0051843_21	phrog_372	236.7	0	tail protein	tail
UniRef90	UHGV-0051843_21	UniRef90_A0A898FLY0	204.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0051843_21	428127.EUBDOL_01566	201.0	0	domain, Protein	N/A
Pfam	UHGV-0051843_21	PF05895	N/A	N/A	N/A	DUF859
Pfam	UHGV-0051843_21	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
COG	UHGV-0051843_21	COG3210	N/A	N/A	Large exoprotein involved in heme utilization or adhesion	N/A
structural_annotation	UHGV-0051843_21	PF05895,MF_04116,MF_00791,NF010681,COG3291,COG5608	N/A	N/A	N/A	N/A
KOfam	UHGV-0051843_22	K11089	164.5	0	TROVE2, SSA2; 60 kDa SS-A/Ro ribonucleoprotein	N/A
PHROG	UHGV-0051843_22	phrog_850	218.2	0	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0051843_22	UniRef90_G8LV85	441.0	0	TROVE domain-containing protein	N/A
eggNOG-mapper	UHGV-0051843_22	1196322.A370_03101	442.0	0	TROVE domain	N/A
Pfam	UHGV-0051843_22	PF05731	N/A	N/A	TROVE domain	TROVE
COG	UHGV-0051843_22	COG2304	N/A	N/A	Secreted protein containing bacterial Ig-like domain and vWFA domain	N/A
structural_annotation	UHGV-0051843_22	PF05731,PF05762,MF_01340,NF041674,COG3552	N/A	N/A	N/A	N/A
PHROG	UHGV-0051843_23	phrog_16241	141.0	7.70014e-42	endolysin	lysis
UniRef90	UHGV-0051843_23	UniRef90_UPI000911095D	62.0	0.000000204	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0051843_23	1042156.CXIVA_07150	66.6	0.00000000133	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0051843_23	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0051843_23	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0051843_23	COG1388	N/A	N/A	LysM repeat	N/A
PHROG	UHGV-0051843_24	phrog_881	87.1	1e-25	holin	lysis
UniRef90	UHGV-0051843_24	UniRef90_UPI00189D3A4F	86.7	5.38e-21	phage holin	N/A
eggNOG-mapper	UHGV-0051843_24	742740.HMPREF9474_02251	86.7	1e-21	Putative phage holin Dp-1	N/A
Pfam	UHGV-0051843_24	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0051843_24	PF16938	N/A	N/A	N/A	N/A
KOfam	UHGV-0051843_26	K14059	168.5	0	int; integrase	N/A
PHROG	UHGV-0051843_26	phrog_1	163.9	0	integrase	integration and excision
UniRef90	UHGV-0051843_26	UniRef90_A0A6N7S5Q9	250.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0051843_26	1123263.AUKY01000072_gene2117	118.0	2.64e-27	Phage integrase family	N/A
Pfam	UHGV-0051843_26	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0051843_26	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0051843_26	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0051843_27	K01356	120.2	2.7e-35	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0051843_27	phrog_4	119.4	3.9e-35	transcriptional repressor	transcription regulation
UniRef90	UHGV-0051843_27	UniRef90_A0A1Y4LWN9	209.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0051843_27	1232446.BAIE02000016_gene1347	172.0	0	PFAM peptidase	N/A
Pfam	UHGV-0051843_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0051843_27	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0051843_27	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0051843_27	PF01381,PF00717,MF_00015,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0051843_28	UniRef90_A0A6A7K9R2	90.5	3.48e-22	N/A	N/A
eggNOG-mapper	UHGV-0051843_28	1121335.Clst_0370	87.0	1.08e-21	N/A	N/A
Pfam	UHGV-0051843_28	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
Pfam	UHGV-0051843_29	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0051843_29	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-0051843_29	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0051843_32	phrog_155	75.3	8.2e-22	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0051843_32	UniRef90_UPI0018AB7FC5	119.0	5.13e-30	ERF family protein	N/A
eggNOG-mapper	UHGV-0051843_32	1321774.HMPREF9108_02351	110.0	1.75e-27	ERF superfamily	N/A
Pfam	UHGV-0051843_32	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0051843_32	PF04404	N/A	N/A	N/A	N/A
PHROG	UHGV-0051843_33	phrog_6244	65.9	8.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-0051843_33	1158609.I586_00060	52.4	0.00000171	YqaJ-like viral recombinase domain	N/A
COG	UHGV-0051843_33	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
PHROG	UHGV-0051843_34	phrog_298	47.2	0.000000000000074	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0051843_34	UniRef90_A0A3D5XTJ3	119.0	3.13e-30	Cas_Cas4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0051843_34	585502.HMPREF0645_2602	63.5	0.00000000221	N/A	N/A
structural_annotation	UHGV-0051843_34	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0051843_35	phrog_1233	67.4	2.3e-19	N/A	unknown function
UniRef90	UHGV-0051843_35	UniRef90_K6D4R3	62.4	0.000000000456	N/A	N/A
eggNOG-mapper	UHGV-0051843_35	1295642.H839_08269	58.5	0.0000000014	N/A	N/A
PHROG	UHGV-0051843_36	phrog_1389	42.5	0.00000000001	N/A	unknown function
eggNOG-mapper	UHGV-0051843_36	883156.HMPREF9282_01223	69.7	0.0000000000000628	N/A	N/A
structural_annotation	UHGV-0051843_36	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-0051843_37	phrog_7566	92.7	2.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-0051843_37	411459.RUMOBE_00948	82.8	2.94e-19	N/A	N/A
KOfam	UHGV-0051843_38	K01160	57.2	5.1e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0051843_38	phrog_1682	76.9	3.1e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0051843_38	UniRef90_F8J189	129.0	3.14e-36	Putative Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0051843_38	508419.F8J189_9CAUD	129.0	5.26e-37	magnesium ion binding	N/A
structural_annotation	UHGV-0051843_38	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0051843_39	phrog_4973	47.1	0.00000000000039	N/A	unknown function
Pfam	UHGV-0051843_39	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0051843_39	PF14090,TIGR00373,COG5625	N/A	N/A	N/A	N/A
PHROG	UHGV-0051843_40	phrog_1163	125.7	4.6e-37	N/A	unknown function
UniRef90	UHGV-0051843_40	UniRef90_UPI000B1808B0	106.0	3.11e-24	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0051843_40	469604.HMPREF0946_00822	113.0	7.25e-28	Transcriptional regulator	N/A
Pfam	UHGV-0051843_40	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0051843_40	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0051843_40	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0051843_40	COG1802	N/A	N/A	DNA-binding transcriptional regulator, GntR family	N/A
structural_annotation	UHGV-0051843_40	PF09524,PF19808,TIGR02220	N/A	N/A	N/A	N/A
PHROG	UHGV-0051843_43	phrog_2245	89.5	4e-26	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0051843_43	UniRef90_A0A8D9CD32	61.6	0.000000000164	Nucleoside triphosphate pyrophosphohydrolase	N/A
eggNOG-mapper	UHGV-0051843_43	706433.HMPREF9430_01279	64.7	0.00000000000229	N/A	N/A
structural_annotation	UHGV-0051843_43	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
PHROG	UHGV-0051843_47	phrog_154	41.6	0.000000000017	replication initiation protein	DNA, RNA and nucleotide metabolism
PHROG	UHGV-0051843_48	phrog_22292	85.2	6.7e-25	N/A	unknown function
PHROG	UHGV-0051843_51	phrog_1157	286.3	0	transposase	integration and excision
UniRef90	UHGV-0051843_51	UniRef90_A0A353JAG8	339.0	0	IS21 family transposase	N/A
eggNOG-mapper	UHGV-0051843_51	865861.AZSU01000003_gene1897	338.0	0	PFAM Integrase catalytic	N/A
Pfam	UHGV-0051843_51	PF00665	N/A	N/A	Integrase core domain	rve
NCBIFam	UHGV-0051843_51	NF033546.1	N/A	N/A	IS21 family transposase	N/A
COG	UHGV-0051843_51	COG4584	N/A	N/A	Transposase	N/A
structural_annotation	UHGV-0051843_51	PF02914,NF033546,COG4584	N/A	N/A	N/A	N/A
PHROG	UHGV-0051843_52	phrog_27475	72.0	6.3e-21	N/A	unknown function
UniRef90	UHGV-0051843_52	UniRef90_A0A353JAG9	166.0	0	Transposase	N/A
eggNOG-mapper	UHGV-0051843_52	865861.AZSU01000003_gene1896	140.0	1.24e-39	IstB-like ATP binding protein	N/A
PADLOC	UHGV-0051843_52	DrmD_00013	55.3	0.0000000000000021	DrmD	DISARM
Pfam	UHGV-0051843_52	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0051843_52	COG1484	N/A	N/A	DNA replication protein DnaC	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0051843	Yes	32,395	38	68	1
UHGV-1507434	No	30,457	38	64	1
UHGV-1507433	No	30,449	38	64	1