vOTU vOTU-036256

vOTU: vOTU-036256

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-036256
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-01550 → vOTU-036256
Host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Gemellaceae → Gemella → Gemella morbillorum
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1515737
Biosample ID	N/A
Genome length (bp)	35,629 bps
CheckV completeness	85.03% (Medium-quality)
CDS count	53
CDS density	95.69%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Gemellaceae → Gemella → Gemella morbillorum	Total connections	2	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 85.03)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1515737_1	UniRef90_A0A6H1F3U5	117.0	4.83e-33	N/A	N/A
eggNOG-mapper	UHGV-1515737_1	272623.L39394	48.9	0.000000807	N/A	N/A
Pfam	UHGV-1515737_1	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-1515737_1	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1515737_1	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1515737_5	K01520	87.6	1.5e-25	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1515737_5	phrog_135	99.9	2e-29	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1515737_5	UniRef90_A0A6H1F390	282.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1515737_5	562981.HMPREF0428_01011	282.0	0	dUTPase	N/A
Pfam	UHGV-1515737_5	PF00692	N/A	N/A	dUTPase	dUTPase
COG	UHGV-1515737_5	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-1515737_5	PF00692,MF_00116,NF010561,COG0756	N/A	N/A	N/A	N/A
KOfam	UHGV-1515737_6	K07727	80.0	4.8e-23	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-1515737_6	phrog_38620	53.6	0.0000000000000043	transcriptional regulator	transcription regulation
UniRef90	UHGV-1515737_6	UniRef90_UPI00195CC59E	99.4	1.28e-25	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1515737_6	1159488.SEQMU2_13765	68.6	0.000000000000564	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1515737_6	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1515737_6	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1515737_6	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1515737_8	K14440	102.2	2.9e-30	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-1515737_8	phrog_62	249.5	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1515737_8	UniRef90_A0A533I0R8	644.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-1515737_8	562981.HMPREF0428_01007	523.0	0	SNF2 family N-terminal domain	N/A
PADLOC	UHGV-1515737_8	ZorD1_00007	44.5	0.00000000000056	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-1515737_8	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
COG	UHGV-1515737_8	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1515737_8	PF00176,PF00271,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-1515737_9	phrog_6244	91.7	8.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-1515737_9	562981.HMPREF0428_01006	138.0	4.11996e-41	N/A	N/A
PHROG	UHGV-1515737_10	phrog_93	59.7	4.3e-17	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1515737_10	UniRef90_A0A6H1F1P0	161.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1515737_10	562981.HMPREF0428_01004	161.0	0	VRR_NUC	N/A
Pfam	UHGV-1515737_10	PF01870	N/A	N/A	Archaeal holliday junction resolvase (hjc)	Hjc
COG	UHGV-1515737_10	COG1591	N/A	N/A	Holliday junction resolvase Hjc, archaeal type	N/A
structural_annotation	UHGV-1515737_10	PF01870,MF_01490,NF002581,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-1515737_12	phrog_8097	614.1	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1515737_12	UniRef90_A0A6H1F3R1	827.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1515737_12	562981.HMPREF0428_01002	827.0	0	AAA domain	N/A
Pfam	UHGV-1515737_12	PF12705	N/A	N/A	PD-(D/E)XK nuclease superfamily	PDDEXK_1
Pfam	UHGV-1515737_12	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-1515737_12	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-1515737_12	PF13479,PF10926,MF_00350,TIGR01618,TIGR00372,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1515737_13	phrog_7778	154.8	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1515737_13	UniRef90_A0A533I2Q7	207.0	0	N/A	N/A
eggNOG-mapper	UHGV-1515737_13	562981.HMPREF0428_01001	187.0	0	N/A	N/A
Pfam	UHGV-1515737_13	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-1515737_13	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1515737_14	phrog_1252	192.3	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1515737_14	UniRef90_R1CRM4	224.0	0	DNA polymerase	N/A
eggNOG-mapper	UHGV-1515737_14	562981.HMPREF0428_01000	692.0	0	DNA polymerase elongation subunit (Family B)	N/A
COG	UHGV-1515737_14	COG0417	N/A	N/A	DNA polymerase B elongation subunit	N/A
structural_annotation	UHGV-1515737_14	PF00136,MF_04100,NF004416,COG0417	N/A	N/A	N/A	N/A
KOfam	UHGV-1515737_15	K06919	52.4	0.0000000000000059	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-1515737_15	phrog_864	354.4	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1515737_15	UniRef90_A0A6H1F3T2	983.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-1515737_15	562981.HMPREF0428_00999	983.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-1515737_15	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-1515737_15	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-1515737_15	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-1515737_15	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-1515737_15	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-1515737_15	PF19263,PF08706,PF03288,PF09250,MF_04000,TIGR01613,COG3378	N/A	N/A	N/A	N/A
PHROG	UHGV-1515737_18	phrog_98	80.3	2.3e-23	N/A	unknown function
UniRef90	UHGV-1515737_18	UniRef90_U2RW93	94.0	2.01e-22	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1515737_18	1321820.HMPREF1983_00941	94.0	3.36e-23	YopX protein	N/A
Pfam	UHGV-1515737_18	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1515737_18	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1515737_18	PF09643,TIGR01671	N/A	N/A	N/A	N/A
Pfam	UHGV-1515737_19	PF06289	N/A	N/A	Flagellar and Swarming motility proteins	FlbD
eggNOG-mapper	UHGV-1515737_21	562981.HMPREF0428_00991	107.0	3.31e-27	N/A	N/A
structural_annotation	UHGV-1515737_24	NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-1515737_25	phrog_36	48.8	0.00000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-1515737_25	UniRef90_A0A533I0C4	180.0	0	N/A	N/A
Pfam	UHGV-1515737_25	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1515737_25	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1515737_25	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1515737_26	phrog_620	150.7	5.60519e-45	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1515737_26	UniRef90_UPI001F2FD4C8	223.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1515737_26	562981.HMPREF0428_00988	201.0	0	chromosome segregation	N/A
PADLOC	UHGV-1515737_26	MTase_II_00015	73.6	3.7e-21	Type II methyltransferase	RM
Pfam	UHGV-1515737_26	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1515737_26	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1515737_26	PF02195,TIGR00180,COG5119	N/A	N/A	N/A	N/A
PHROG	UHGV-1515737_27	phrog_842	225.8	0	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UniRef90	UHGV-1515737_27	UniRef90_A0A516LJ12	292.0	0	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	N/A
eggNOG-mapper	UHGV-1515737_27	508419.F8J156_9CAUD	213.0	0	N/A	N/A
Pfam	UHGV-1515737_27	PF20691	N/A	N/A	TET-Associated Glycosyltransferase	TAGT
structural_annotation	UHGV-1515737_27	PF20691,NF041865,COG1216	N/A	N/A	N/A	N/A
PHROG	UHGV-1515737_28	phrog_2412	163.8	0	N/A	unknown function
UniRef90	UHGV-1515737_28	UniRef90_UPI0012DF54D1	138.0	3.99e-39	stress-induced protein	N/A
eggNOG-mapper	UHGV-1515737_28	12402.Q708N5_9CAUD	118.0	4.48e-32	N/A	N/A
KOfam	UHGV-1515737_29	K06909	372.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1515737_29	phrog_3717	279.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1515737_29	UniRef90_A0A533I2U7	765.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1515737_29	1461246.X2KU22_9VIRU	662.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1515737_29	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1515737_29	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1515737_29	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
HAMAP	UHGV-1515737_29	MF_04145	N/A	N/A	Terminase, large subunit	N/A
structural_annotation	UHGV-1515737_29	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1515737_30	phrog_64	318.4	0	portal protein	head and packaging
UniRef90	UHGV-1515737_30	UniRef90_A0A533I0P7	671.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1515737_30	272558.10176156	237.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1515737_30	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1515737_30	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1515737_30	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-1515737_31	phrog_115	224.9	0	minor head protein	head and packaging
UniRef90	UHGV-1515737_31	UniRef90_A0A533HX40	472.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1515737_31	272558.10176155	145.0	1.18e-34	Phage Mu protein F like protein	N/A
Pfam	UHGV-1515737_31	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1515737_31	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1515737_31	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1515737_31	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1515737_33	TIGR04165,COG3478	N/A	N/A	N/A	N/A
PHROG	UHGV-1515737_34	phrog_172	101.5	1e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-1515737_34	UniRef90_A0A533I159	202.0	0	N/A	N/A
eggNOG-mapper	UHGV-1515737_34	272558.10176153	71.6	0.00000000000104	N/A	N/A
Pfam	UHGV-1515737_34	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1515737_34	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1515737_35	phrog_422	154.6	0	major head protein	head and packaging
UniRef90	UHGV-1515737_35	UniRef90_A0A533HZ87	451.0	0	Sugar-binding protein	N/A
eggNOG-mapper	UHGV-1515737_35	1277891.M1IF90_9CAUD	234.0	0	N/A	N/A
PHROG	UHGV-1515737_36	phrog_132	56.5	4.1e-16	head-tail adaptor	connector
UniRef90	UHGV-1515737_36	UniRef90_A0A533I2P1	152.0	1.4013e-45	Phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1515737_36	1120978.KB894087_gene438	50.1	0.00000237	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-1515737_36	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1515737_36	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-1515737_43	phrog_167	116.8	3.4e-38	tail length tape measure protein	tail
UniRef90	UHGV-1515737_43	UniRef90_A0A533HZZ3	588.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-1515737_43	370438.PTH_2178	155.0	1.04e-35	Apolipoprotein A1/A4/E domain	N/A
Pfam	UHGV-1515737_43	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1515737_43	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1515737_43	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1515737_43	PF20155,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1515737_44	phrog_33	56.1	9.4e-16	distal tail protein Dit	tail
UniRef90	UHGV-1515737_44	UniRef90_A0A3R9MJL7	179.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1515737_44	999425.HMPREF9186_02046	177.0	0	N/A	N/A
COG	UHGV-1515737_44	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1515737_44	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1515737_45	phrog_2270	346.6	0	N/A	unknown function
UniRef90	UHGV-1515737_45	UniRef90_A0A420YQM7	467.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1515737_45	562981.HMPREF0428_01809	316.0	0	N/A	N/A
Pfam	UHGV-1515737_45	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1515737_45	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
eggNOG-mapper	UHGV-1515737_46	1321820.HMPREF1983_00920	79.7	9.43e-19	N/A	N/A
PHROG	UHGV-1515737_47	phrog_1060	62.3	5.5e-18	N/A	unknown function
UniRef90	UHGV-1515737_47	UniRef90_A0A533I0A6	117.0	5.05e-31	N/A	N/A
eggNOG-mapper	UHGV-1515737_47	562981.HMPREF0428_01807	95.1	4.22e-23	N/A	N/A
Pfam	UHGV-1515737_47	PF07104	N/A	N/A	N/A	DUF1366
structural_annotation	UHGV-1515737_47	PF07104	N/A	N/A	N/A	N/A
PHROG	UHGV-1515737_48	phrog_1382	65.5	4.1e-19	N/A	unknown function
eggNOG-mapper	UHGV-1515737_48	665950.HMPREF1025_01332	48.1	0.000000419	N/A	N/A
NCBIFam	UHGV-1515737_48	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-1515737_48	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-1515737_49	phrog_199	62.7	4.4e-18	holin	lysis
UniRef90	UHGV-1515737_49	UniRef90_A0A2X4RDZ6	221.0	0	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-1515737_49	1158602.I590_00633	143.0	2.06972e-42	Bacteriophage holin family	N/A
Pfam	UHGV-1515737_49	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1515737_49	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-1515737_49	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1515737_50	phrog_998	243.7	0	endolysin	lysis
UniRef90	UHGV-1515737_50	UniRef90_A0A3R9L8K9	364.0	0	Bacteriophage peptidoglycan hydrolase	N/A
eggNOG-mapper	UHGV-1515737_50	873448.STRPO_0302	332.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-1515737_50	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
COG	UHGV-1515737_50	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1515737_50	PF05382,PF18341,NF033742,COG0791,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-1515737_52	phrog_12732	106.6	1.6e-31	N/A	unknown function
UniRef90	UHGV-1515737_52	UniRef90_O03943	75.5	0.000000000000014	Rorf148 protein	N/A
AcrCatalog	UHGV-1515737_52	cluster_25206	78.2	4.68e-21	NA	N/A
PHROG	UHGV-1515737_53	phrog_1529	69.4	6.8e-20	N/A	unknown function

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1515737	Yes	35,629	34	85	1
UHGV-1529913	No	22,610	35	56	1