vOTU vOTU-036813

vOTU: vOTU-036813

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-036813
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00213 → vOTU-036813
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2176973
Biosample ID	SAMEA3449371
Genome length (bp)	23,275 bps
CheckV completeness	55.34% (Medium-quality)
CDS count	39
CDS density	89.98%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	59	Host agreement	83.05
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp000435555	Total connections	6	Host agreement	83.33

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 55.34)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2176973_1	phrog_22978	828.4	0	N/A	unknown function
eggNOG-mapper	UHGV-2176973_1	1410650.JHWL01000003_gene2814	276.0	0	N/A	N/A
PHROG	UHGV-2176973_2	phrog_3754	94.2	1.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-2176973_2	476272.RUMHYD_01764	162.0	0	N/A	N/A
PHROG	UHGV-2176973_3	phrog_21718	102.7	3.3e-30	N/A	unknown function
eggNOG-mapper	UHGV-2176973_3	397290.C810_05210	70.9	0.000000000000232	N/A	N/A
PHROG	UHGV-2176973_4	phrog_22984	76.2	3.7e-22	N/A	unknown function
PHROG	UHGV-2176973_5	phrog_16490	117.0	9.1e-35	N/A	unknown function
eggNOG-mapper	UHGV-2176973_5	1408437.JNJN01000043_gene803	174.0	0	N/A	N/A
PHROG	UHGV-2176973_6	phrog_20016	197.9	0	N/A	unknown function
UniRef90	UHGV-2176973_6	UniRef90_A0A285PT46	188.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-2176973_6	397290.C810_05214	170.0	0	N/A	N/A
structural_annotation	UHGV-2176973_6	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-2176973_7	phrog_28802	67.6	1.4e-19	N/A	unknown function
structural_annotation	UHGV-2176973_7	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2176973_8	1226322.HMPREF1545_00079	90.1	5.05e-22	N/A	N/A
KOfam	UHGV-2176973_9	K06400	289.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2176973_9	phrog_95	287.2	0	integrase	integration and excision
UniRef90	UHGV-2176973_9	UniRef90_A0A1C6HT72	367.0	0	Resolvase, N terminal domain	N/A
eggNOG-mapper	UHGV-2176973_9	357809.Cphy_2997	274.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-2176973_9	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2176973_9	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-2176973_9	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2176973_9	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-2176973_10	UniRef90_A0A8D9UHA6	287.0	0	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-2176973_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-2176973_10	PF12844,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-2176973_11	K07448	119.1	3.6e-35	mrr; restriction system protein	N/A
PHROG	UHGV-2176973_11	phrog_19856	55.2	0.000000000000001	N/A	unknown function
UniRef90	UHGV-2176973_11	UniRef90_A0A2Z4Q9W7	240.0	0	Restriction endonuclease	N/A
eggNOG-mapper	UHGV-2176973_11	397290.C810_01426	162.0	2.52234e-44	Restriction endonuclease	N/A
PADLOC	UHGV-2176973_11	ZorD1_00005	65.0	8.6e-19	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-2176973_11	PF09397	N/A	N/A	Ftsk gamma domain	FtsK_gamma
Pfam	UHGV-2176973_11	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-2176973_11	COG1674	N/A	N/A	DNA segregation ATPase FtsK/SpoIIIE or related protein	N/A
structural_annotation	UHGV-2176973_11	PF04471,NF002876,COG1787	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2176973_13	1519439.JPJG01000061_gene1989	53.1	0.000000183	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-2176973_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2176973_13	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2176973_13	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-2176973_14	phrog_8	42.7	0.000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-2176973_14	UniRef90_A0A328UFC2	69.7	0.0000000000000268	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-2176973_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2176973_14	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-2176973_14	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2176973_15	760568.Desku_0919	110.0	1.67e-27	N/A	N/A
structural_annotation	UHGV-2176973_15	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-2176973_17	phrog_22529	49.0	0.000000000000075	N/A	unknown function
UniRef90	UHGV-2176973_17	UniRef90_A0A8D9UHA1	315.0	0	3D containing protein	N/A
eggNOG-mapper	UHGV-2176973_17	658088.HMPREF0987_02675	65.9	0.000000000205	peptidase	N/A
Pfam	UHGV-2176973_17	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-2176973_17	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-2176973_17	COG3584	N/A	N/A	N/A	N/A
UniRef90	UHGV-2176973_19	UniRef90_A0A8D9UH91	315.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-2176973_19	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-2176973_19	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-2176973_21	phrog_253	85.3	7.9e-25	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2176973_21	UniRef90_A0A8D9PDS3	319.0	0	Resistance protein	N/A
eggNOG-mapper	UHGV-2176973_21	748224.HMPREF9436_03356	105.0	1.3e-26	Siphovirus Gp157	N/A
Pfam	UHGV-2176973_21	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-2176973_21	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-2176973_22	phrog_7838	142.2	3.50044e-42	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2176973_22	UniRef90_A0A8D9UGW3	432.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-2176973_22	742767.HMPREF9456_02052	187.0	0	N/A	N/A
structural_annotation	UHGV-2176973_22	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-2176973_23	phrog_1389	80.1	2.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-2176973_23	1347392.CCEZ01000060_gene3269	113.0	3.1e-31	N/A	N/A
structural_annotation	UHGV-2176973_23	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-2176973_25	phrog_7566	94.5	6.6e-28	N/A	unknown function
UniRef90	UHGV-2176973_25	UniRef90_A0A8D9UHC0	190.0	0	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-2176973_25	693746.OBV_24070	123.0	2.71e-35	N/A	N/A
KOfam	UHGV-2176973_26	K03111	146.9	2.00386e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2176973_26	phrog_44	147.9	5.46506e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2176973_26	UniRef90_R6GTK3	199.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2176973_26	693746.OBV_19910	195.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-2176973_26	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2176973_26	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2176973_26	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2176973_26	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2176973_26	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-2176973_28	phrog_15768	104.1	3.6e-33	N/A	unknown function
UniRef90	UHGV-2176973_28	UniRef90_A0A8D9PDU3	298.0	0	N/A	N/A
eggNOG-mapper	UHGV-2176973_28	203119.Cthe_2466	83.6	3.32e-16	N/A	N/A
Pfam	UHGV-2176973_28	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-2176973_28	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-2176973_30	phrog_190	110.7	1.2e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2176973_30	UniRef90_A0A8D9PDD6	275.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-2176973_30	862517.HMPREF9225_1657	82.8	1.44e-18	N/A	N/A
Pfam	UHGV-2176973_30	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-2176973_30	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-2176973_31	K07319	69.9	4.3e-28	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-2176973_31	phrog_67	71.7	5.6e-29	DNA methyltransferase	other
UniRef90	UHGV-2176973_31	UniRef90_A0A8D9PDC5	167.0	0	Adenine specific DNA methyltransferase	N/A
eggNOG-mapper	UHGV-2176973_31	1125725.HMPREF1325_1312	143.0	4.3e-40	N-4 methylation of cytosine	N/A
PADLOC	UHGV-2176973_31	MTase_II_00172	81.6	1.5e-23	Type II methyltransferase	RM
Pfam	UHGV-2176973_31	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-2176973_31	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-2176973_31	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-2176973_33	K21507	51.5	7.9e-17	dmt; methyltransferase [EC:2.1.1.-]	N/A
PHROG	UHGV-2176973_33	phrog_16427	75.0	2.8e-22	DNA methyltransferase	other
UniRef90	UHGV-2176973_33	UniRef90_A0A1C5KYC3	215.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-2176973_33	657322.FPR_26610	196.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
Pfam	UHGV-2176973_33	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-2176973_33	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-2176973_36	phrog_38832	72.7	1.2e-28	N/A	unknown function
eggNOG-mapper	UHGV-2176973_36	665956.HMPREF1032_03087	84.7	6.67e-19	N/A	N/A
structural_annotation	UHGV-2176973_36	PF11717,TIGR02450	N/A	N/A	N/A	N/A
UniRef90	UHGV-2176973_38	UniRef90_A0A8D9PDT5	57.4	0.0000000166	Hydrogenase/urease nickel incorporation protein	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2176973	Yes	23,275	55	55	1
UHGV-1558115	No	11,464	53	27	1