vOTU vOTU-037053

vOTU: vOTU-037053

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-037053
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia
Taxonomy (UHGV)	vFAM-00060 → vSUBFAM-06446 → vOTU-037053
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → UMGS1071 → UMGS1071 sp900542375
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-1406089
Biosample ID	N/A
Genome length (bp)	25,927 bps
CheckV completeness	76.55% (Medium-quality)
CDS count	42
CDS density	86.74%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → UMGS1071 → UMGS1071 sp900542375	Total connections	79	Host agreement	78.48
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia	Total connections	5	Host agreement	80

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 76.55)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1406089_1	K00558	204.2	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1406089_1	phrog_116	242.0	0	DNA methyltransferase	other
UniRef90	UHGV-1406089_1	UniRef90_UPI000C06BA5A	630.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1406089_1	1499683.CCFF01000017_gene2594	397.0	0	PFAM C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1406089_1	MTase_II_00058	232.2	0	Type II methyltransferase	RM
Pfam	UHGV-1406089_1	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1406089_1	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1406089_1	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1406089_1	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1406089_2	phrog_5444	68.7	1e-19	N/A	unknown function
eggNOG-mapper	UHGV-1406089_2	1239384.K4MPU6_9CAUD	77.8	5.02e-18	N/A	N/A
KOfam	UHGV-1406089_3	K22299	46.4	0.00000000000091	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1406089_3	phrog_5823	53.6	0.0000000000000035	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1406089_3	1095743.HMPREF1054_1827	47.8	0.00000634	Helix-turn-helix domain	N/A
PADLOC	UHGV-1406089_3	retron_type_VI_hth_cluster2_1	44.7	0.000000000004	N/A	Retron
Pfam	UHGV-1406089_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1406089_3	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-1406089_5	K01160	63.3	7e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1406089_5	phrog_140	132.6	2.1e-39	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1406089_5	UniRef90_A0A7X5DCG3	134.0	1.07e-37	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1406089_5	272563.CD630_09360	114.0	8.62e-31	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1406089_5	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1406089_5	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1406089_5	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1406089_6	phrog_20437	167.4	0	DNA replication initiation	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1406089_6	UniRef90_A0A3A6E2X3	240.0	0	N/A	N/A
eggNOG-mapper	UHGV-1406089_6	97138.C820_00626	221.0	0	N/A	N/A
Pfam	UHGV-1406089_6	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-1406089_6	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1406089_6	PF14297	N/A	N/A	N/A	N/A
PHROG	UHGV-1406089_7	phrog_2113	52.1	0.000000000000009	N/A	unknown function
structural_annotation	UHGV-1406089_7	PF21715,COG1654	N/A	N/A	N/A	N/A
KOfam	UHGV-1406089_8	K03111	142.4	4.69996e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1406089_8	phrog_44	150.0	1.26117e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1406089_8	UniRef90_UPI0004AC739F	174.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1406089_8	1105031.HMPREF1141_2832	168.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1406089_8	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1406089_8	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1406089_8	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1406089_8	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1406089_8	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1406089_9	phrog_72	64.1	1.8e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1406089_9	UniRef90_A0A8D9PDS2	140.0	7.46e-39	NinB protein	N/A
eggNOG-mapper	UHGV-1406089_9	445972.ANACOL_01825	103.0	1.55e-25	N/A	N/A
structural_annotation	UHGV-1406089_9	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1406089_10	phrog_155	103.2	2.9e-30	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1406089_10	UniRef90_UPI00190EAB3F	217.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1406089_10	1268072.PSAB_05935	190.0	0	ERF superfamily	N/A
Pfam	UHGV-1406089_10	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1406089_10	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1406089_12	1033743.CAES01000078_gene3736	114.0	5.82e-30	Flagellar Assembly Protein A	N/A
COG	UHGV-1406089_12	COG1315	N/A	N/A	Flagellar assembly protein FapA, interacts with EIIAGlc	N/A
structural_annotation	UHGV-1406089_12	COG1664	N/A	N/A	N/A	N/A
UniRef90	UHGV-1406089_16	UniRef90_A0A417BZP8	80.1	2.33e-18	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1406089_16	1121428.DESHY_20112___1	50.4	0.000000198	Helix-turn-helix XRE-family like proteins	N/A
structural_annotation	UHGV-1406089_16	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1406089_17	K01356	133.6	2.3e-39	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1406089_17	phrog_4	114.3	1.4e-33	transcriptional repressor	transcription regulation
UniRef90	UHGV-1406089_17	UniRef90_UPI000B8B6D8A	229.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1406089_17	411473.RUMCAL_03095	183.0	0	N/A	N/A
Pfam	UHGV-1406089_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1406089_17	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1406089_17	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1406089_17	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-1406089_18	K19370	42.5	0.0000000000056	DNAJC22; DnaJ homolog subfamily C member 22	N/A
PHROG	UHGV-1406089_18	phrog_10292	65.5	4.3e-19	N/A	unknown function
UniRef90	UHGV-1406089_18	UniRef90_A0A1C6GUP7	142.0	1.51e-40	TM2 domain	N/A
eggNOG-mapper	UHGV-1406089_18	552398.HMPREF0866_01580	119.0	2.11e-32	TM2 domain	N/A
Pfam	UHGV-1406089_18	PF14020	N/A	N/A	N/A	DUF4236
Pfam	UHGV-1406089_18	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-1406089_18	COG0457	N/A	N/A	Tetratricopeptide (TPR) repeat	N/A
structural_annotation	UHGV-1406089_18	PF14020,PF05154	N/A	N/A	N/A	N/A
KOfam	UHGV-1406089_19	K06400	333.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1406089_19	phrog_95	320.8	0	integrase	integration and excision
UniRef90	UHGV-1406089_19	UniRef90_UPI001C63F9A1	324.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1406089_19	645991.Sgly_0308	282.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1406089_19	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1406089_19	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1406089_19	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1406089_19	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1406089_19	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-1406089_22	cluster_37489	42.4	0.000000222	NA	N/A
UniRef90	UHGV-1406089_23	UniRef90_A0A4S2A7A9	105.0	1.13e-28	N/A	N/A
structural_annotation	UHGV-1406089_23	PF03869,NF008671,COG4710	N/A	N/A	N/A	N/A
UniRef90	UHGV-1406089_25	UniRef90_UPI000D023316	67.8	0.000000000137	N/A	N/A
eggNOG-mapper	UHGV-1406089_25	1295642.H839_16008	99.8	3.17e-23	N/A	N/A
PHROG	UHGV-1406089_26	phrog_1281	134.4	4.6e-40	N/A	unknown function
UniRef90	UHGV-1406089_26	UniRef90_UPI00068A2F0A	172.0	0	N/A	N/A
eggNOG-mapper	UHGV-1406089_26	935948.KE386495_gene1162	172.0	0	N/A	N/A
Pfam	UHGV-1406089_26	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-1406089_26	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1406089_26	PF13274,COG3600	N/A	N/A	N/A	N/A
PHROG	UHGV-1406089_27	phrog_1129	92.0	3e-27	holin	lysis
UniRef90	UHGV-1406089_27	UniRef90_UPI001C124A7D	99.8	3.66e-25	phage holin family protein	N/A
eggNOG-mapper	UHGV-1406089_27	411460.RUMTOR_01325	93.2	2.22e-23	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1406089_27	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1406089_27	PF16079	N/A	N/A	N/A	N/A
PHROG	UHGV-1406089_28	phrog_4105	45.4	0.0000000000012	N/A	unknown function
KOfam	UHGV-1406089_29	K01447	54.3	0.0000000000000027	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1406089_29	phrog_7698	185.5	0	endolysin	lysis
UniRef90	UHGV-1406089_29	UniRef90_UPI0009861559	298.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1406089_29	877411.JMMA01000002_gene2384	209.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1406089_29	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1406089_29	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1406089_29	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1406089_31	phrog_24267	70.0	1.9e-21	N/A	unknown function
UniRef90	UHGV-1406089_31	UniRef90_A0A173T301	86.7	2.25e-16	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-1406089_31	556261.HMPREF0240_01282	100.0	7.79e-21	N/A	N/A
COG	UHGV-1406089_31	COG4675	N/A	N/A	Phage tail collar domain	N/A
eggNOG-mapper	UHGV-1406089_32	428125.CLOLEP_00173	362.0	0	N/A	N/A
structural_annotation	UHGV-1406089_32	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1406089_33	phrog_1272	227.1	0	tail length tape measure protein	tail
UniRef90	UHGV-1406089_33	UniRef90_A7VT93	329.0	0	Phage tail tape measure protein, TP901 family	N/A
eggNOG-mapper	UHGV-1406089_33	428125.CLOLEP_01785	329.0	0	tail tape measure protein, TP901	N/A
Pfam	UHGV-1406089_33	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1406089_33	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1406089_33	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1406089_34	phrog_706	151.3	4.2039e-45	N/A	unknown function
UniRef90	UHGV-1406089_34	UniRef90_UPI000C819E80	155.0	1.68156e-44	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1406089_34	428125.CLOLEP_01787	141.0	1.05e-39	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1406089_34	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1406089_34	PF06854	N/A	N/A	N/A	N/A
UniRef90	UHGV-1406089_35	UniRef90_A0A143ZVS5	81.3	2.84e-17	Cse1 domain-containing protein	N/A
structural_annotation	UHGV-1406089_35	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1406089_36	phrog_820	119.6	1.7e-35	major tail protein	tail
UniRef90	UHGV-1406089_36	UniRef90_A0A3A6EPU8	153.0	7.9874e-44	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1406089_36	428125.CLOLEP_00178	186.0	0	Belongs to the glycosyl hydrolase family 6	N/A
COG	UHGV-1406089_36	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-1406089_37	phrog_913	57.6	2.3e-16	minor head protein	head and packaging
structural_annotation	UHGV-1406089_37	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1406089_38	phrog_556	44.7	0.0000000000022	minor head protein	head and packaging
UniRef90	UHGV-1406089_38	UniRef90_UPI000C857E2C	110.0	7.13e-29	minor capsid protein	N/A
eggNOG-mapper	UHGV-1406089_38	428125.CLOLEP_00180	158.0	0	Minor capsid protein	N/A
structural_annotation	UHGV-1406089_38	PF11114	N/A	N/A	N/A	N/A
UniRef90	UHGV-1406089_39	UniRef90_UPI001D06E7F2	94.7	1.14e-22	minor capsid protein	N/A
COG	UHGV-1406089_39	COG5652	N/A	N/A	VanZ-like family protein (function unknown)	N/A
structural_annotation	UHGV-1406089_39	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1406089_40	phrog_541	103.1	1.8e-30	head-tail adaptor	connector
eggNOG-mapper	UHGV-1406089_40	1158602.I590_02994	65.5	0.0000000000131	N/A	N/A
PHROG	UHGV-1406089_41	phrog_422	340.3	0	major head protein	head and packaging
UniRef90	UHGV-1406089_41	UniRef90_A0A316T938	536.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1406089_41	428125.CLOLEP_00183	617.0	0	COG NOG28280 non supervised orthologous group	N/A
structural_annotation	UHGV-1406089_41	PF19821,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1406089	Yes	25,927	39	77	1
UHGV-0043468	No	25,927	39	77	1
UHGV-1827760	No	15,939	40	47	1