vOTU vOTU-037098

vOTU: vOTU-037098

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-037098
Number of genomes	2
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-01056 → vGENUS-02028 → vOTU-037098
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0005562
Biosample ID	N/A
Genome length (bp)	31,044 bps
CheckV completeness	86.32% (Medium-quality)
CDS count	40
CDS density	94.19%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	104	Host agreement	98.08
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 86.32)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0005562_1	K02171	42.0	0.000000000014	blaI; BlaI family transcriptional regulator, penicillinase repressor	N/A
UniRef90	UHGV-0005562_1	UniRef90_R6HAZ7	55.1	0.000000311	Putative regulatory protein	N/A
eggNOG-mapper	UHGV-0005562_1	411469.EUBHAL_02082	52.8	0.00000031	Transcriptional regulator, BlaI MecI CopY family	N/A
Pfam	UHGV-0005562_1	PF03965	N/A	N/A	Penicillinase repressor	Penicillinase_R
COG	UHGV-0005562_1	COG3682	N/A	N/A	Transcriptional regulator, CopY/TcrY family	N/A
KOfam	UHGV-0005562_5	K03698	55.1	0.0000000000000012	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-0005562_5	phrog_28876	138.4	4.10006e-41	metal-dependent phosphohydrolase	other
UniRef90	UHGV-0005562_5	UniRef90_A0A8J6IP18	157.0	5.60519e-45	HD domain-containing protein	N/A
eggNOG-mapper	UHGV-0005562_5	411483.FAEPRAA2165_03185	150.0	2.56438e-43	metal-dependent phosphohydrolase, HD sub domain	N/A
Pfam	UHGV-0005562_5	PF07514	N/A	N/A	Putative helicase	TraI_2
COG	UHGV-0005562_5	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-0005562_5	PF07514,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
PHROG	UHGV-0005562_6	phrog_3136	80.2	2e-23	N/A	unknown function
UniRef90	UHGV-0005562_6	UniRef90_UPI001C018CFA	88.6	1.59e-19	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0005562_6	693746.OBV_25380	65.9	0.0000000000892	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0005562_6	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0005562_6	PF08819,MF_00684,NF003443,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0005562_7	K00571	64.1	2.9e-18	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0005562_7	phrog_67	59.6	5.7e-17	DNA methyltransferase	other
UniRef90	UHGV-0005562_7	UniRef90_A0A6H1ZDC4	155.0	4.05956e-42	Putative methyltransferase	N/A
eggNOG-mapper	UHGV-0005562_7	1444310.JANV01000096_gene3256	82.0	0.00000000000000234	DNA methylase	N/A
PADLOC	UHGV-0005562_7	MTase_II_00051	77.9	2.7e-22	Type II methyltransferase	RM
Pfam	UHGV-0005562_7	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0005562_7	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
KOfam	UHGV-0005562_8	K07319	93.0	4e-27	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0005562_8	phrog_67	90.6	2.1e-26	DNA methyltransferase	other
UniRef90	UHGV-0005562_8	UniRef90_A0A2X3IKC3	74.7	0.00000000000000263	Putative methylase	N/A
eggNOG-mapper	UHGV-0005562_8	742735.HMPREF9467_05134	78.2	6.42e-16	DNA methylase	N/A
PADLOC	UHGV-0005562_8	MTase_II_00157	76.3	8e-22	Type II methyltransferase	RM
Pfam	UHGV-0005562_8	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0005562_8	COG0863	N/A	N/A	DNA modification methylase	N/A
PHROG	UHGV-0005562_9	phrog_3584	200.7	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0005562_9	525254.HMPREF0072_1311	121.0	3.8e-30	N/A	N/A
structural_annotation	UHGV-0005562_9	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0005562_10	phrog_37023	107.9	7.6e-32	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005562_10	UniRef90_A0A6S6XBJ8	148.0	5.5071e-43	Tn7_Tnp_TnsA_N domain-containing protein	N/A
Pfam	UHGV-0005562_10	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0005562_10	PF06356,MF_04160,NF002584	N/A	N/A	N/A	N/A
PHROG	UHGV-0005562_11	phrog_36399	96.5	2.5e-28	N/A	unknown function
eggNOG-mapper	UHGV-0005562_11	1226322.HMPREF1545_00099	85.5	5.88e-20	N/A	N/A
PHROG	UHGV-0005562_12	phrog_8470	207.2	0	N/A	unknown function
UniRef90	UHGV-0005562_12	UniRef90_UPI0002D9F0BD	149.0	3.9e-35	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0005562_12	1007096.BAGW01000031_gene117	149.0	6.78e-36	PcfJ-like protein	N/A
Pfam	UHGV-0005562_12	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0005562_12	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0005562_13	phrog_15609	101.7	6.6e-30	N/A	unknown function
UniRef90	UHGV-0005562_13	UniRef90_A0A3A6JZQ1	140.0	3.34e-34	N/A	N/A
eggNOG-mapper	UHGV-0005562_13	1514668.JOOA01000001_gene225	75.9	0.00000000000147	N/A	N/A
structural_annotation	UHGV-0005562_13	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0005562_15	phrog_36	67.0	3.4e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0005562_15	UniRef90_A0A645DPV0	63.9	0.000000000277	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0005562_15	411471.SUBVAR_05843	59.3	0.00000000298	N/A	N/A
structural_annotation	UHGV-0005562_15	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0005562_17	K07451	47.0	0.00000000000047	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0005562_17	phrog_119	60.1	3.7e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005562_17	UniRef90_A0A7X5E0G7	85.1	3.58e-19	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0005562_17	665956.HMPREF1032_00125	119.0	3.68e-33	HNH nucleases	N/A
COG	UHGV-0005562_17	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0005562_18	phrog_5110	75.5	5.3e-22	terminase small subunit	head and packaging
UniRef90	UHGV-0005562_18	UniRef90_A0A4U7JDP0	106.0	7.54e-28	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0005562_18	665956.HMPREF1032_00124	112.0	4.67e-31	N/A	N/A
Pfam	UHGV-0005562_18	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0005562_18	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0005562_19	phrog_9	261.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0005562_19	UniRef90_UPI001C46A542	630.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0005562_19	665956.HMPREF1032_00123	617.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0005562_19	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0005562_19	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0005562_19	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0005562_19	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0005562_20	phrog_12	107.3	9.7e-32	portal protein	head and packaging
UniRef90	UHGV-0005562_20	UniRef90_A0A7G8TDY8	298.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0005562_20	665956.HMPREF1032_00118	278.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0005562_20	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0005562_20	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0005562_20	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0005562_21	K01358	132.8	3.6e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0005562_21	phrog_94	197.4	0	head maturation protease	head and packaging
UniRef90	UHGV-0005562_21	UniRef90_A0A1Y4BT12	183.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0005562_21	86416.Clopa_0340	182.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0005562_21	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0005562_21	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0005562_21	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0005562_22	phrog_10	114.2	1.4e-33	major head protein	head and packaging
UniRef90	UHGV-0005562_22	UniRef90_A0A1T4YDE5	327.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-0005562_22	665956.HMPREF1032_00116	382.0	0	Phage capsid family	N/A
Pfam	UHGV-0005562_22	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0005562_22	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0005562_22	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0005562_22	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0005562_24	phrog_19734	75.2	7.8e-22	N/A	unknown function
UniRef90	UHGV-0005562_24	UniRef90_UPI00057FE645	60.1	0.00000000258	phage head closure protein	N/A
eggNOG-mapper	UHGV-0005562_24	1235798.C817_02576	61.6	0.000000000131	N/A	N/A
structural_annotation	UHGV-0005562_24	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0005562_25	UniRef90_UPI000F5C033A	68.2	0.00000000000238	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0005562_25	1226322.HMPREF1545_00119	62.4	0.000000000086	N/A	N/A
Pfam	UHGV-0005562_25	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0005562_25	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0005562_27	phrog_2175	77.3	2e-22	protein with Ig domain	other
UniRef90	UHGV-0005562_27	UniRef90_A0A644VRS9	158.0	8.40779e-45	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0005562_27	665956.HMPREF1032_00111	183.0	0	N/A	N/A
structural_annotation	UHGV-0005562_27	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0005562_28	phrog_29863	90.7	1.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-0005562_28	665956.HMPREF1032_00110	91.7	7.51e-23	N/A	N/A
structural_annotation	UHGV-0005562_28	PF17388	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0005562_29	1415774.U728_1245	54.7	0.00000000543	N/A	N/A
PHROG	UHGV-0005562_30	phrog_1272	214.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0005562_30	UniRef90_A0A174XH68	360.0	0	Phage tail tape measure protein, TP901 family	N/A
eggNOG-mapper	UHGV-0005562_30	411468.CLOSCI_00540	328.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0005562_30	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0005562_30	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0005562_30	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0005562_31	phrog_33	71.5	2e-20	distal tail protein Dit	tail
UniRef90	UHGV-0005562_31	UniRef90_A0A1C5W6B6	162.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0005562_31	536233.CLO_0897	92.8	4.15e-20	tail component	N/A
COG	UHGV-0005562_31	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0005562_31	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0005562_32	phrog_1067	415.3	0	minor head protein	head and packaging
UniRef90	UHGV-0005562_32	UniRef90_A0A3D5L0J3	478.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0005562_32	1160721.RBI_I01574	405.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0005562_32	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0005562_32	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0005562_32	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0005562_32	PF14594,PF00629,PF03424,TIGR01665,NF033675,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0005562_34	phrog_16573	58.9	9e-17	N/A	unknown function
UniRef90	UHGV-0005562_34	UniRef90_W0U658	102.0	3.69e-23	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0005562_34	1160721.RBI_I01572	102.0	6.18e-24	N/A	N/A
Pfam	UHGV-0005562_34	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-0005562_34	PF10651,NF033814,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-0005562_35	phrog_17147	451.3	0	N/A	unknown function
UniRef90	UHGV-0005562_35	UniRef90_A0A1M6MWL0	150.0	5.79e-35	N-terminal domain of peptidoglycan hydrolase CwlO-containing protein	N/A
eggNOG-mapper	UHGV-0005562_35	411459.RUMOBE_01720	544.0	0	N/A	N/A
KOfam	UHGV-0005562_36	K00986	55.2	9.1e-16	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0005562_36	phrog_1423	121.1	9.3e-36	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005562_36	UniRef90_A0A357TPP5	408.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0005562_36	657322.FPR_27160	237.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
COG	UHGV-0005562_36	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0005562_36	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
KOfam	UHGV-0005562_39	K07273	139.7	2.70002e-41	acm; lysozyme	N/A
PHROG	UHGV-0005562_39	phrog_291	117.4	1.6e-34	endolysin	lysis
UniRef90	UHGV-0005562_39	UniRef90_UPI00195E5E78	191.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0005562_39	411471.SUBVAR_06927	183.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0005562_39	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0005562_39	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
PHROG	UHGV-0005562_40	phrog_37799	62.0	2.8e-18	N/A	unknown function
UniRef90	UHGV-0005562_40	UniRef90_R6NA79	140.0	5.01e-39	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-0005562_40	272563.CD630_06610	128.0	9.48e-35	Bacteriophage holin family	N/A
Pfam	UHGV-0005562_40	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0005562_40	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0005562_40	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0005562	Yes	31,044	56	86	1
UHGV-0011770	No	27,085	56	75	1