vOTU vOTU-037567

vOTU: vOTU-037567

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-037567
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira sp000436475
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00117 → vGENUS-15868 → vOTU-037567
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0098738
Biosample ID	SAMEA3708619
Genome length (bp)	39,887 bps
CheckV completeness	63.90% (Medium-quality)
CDS count	62
CDS density	91.96%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira	Total connections	977	Host agreement	98.57
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira sp000436475	Total connections	109	Host agreement	97.25

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 63.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0098738_1	K07273	98.5	9.1e-29	acm; lysozyme	N/A
PHROG	UHGV-0098738_1	phrog_291	86.2	5.5e-25	endolysin	lysis
UniRef90	UHGV-0098738_1	UniRef90_A0A174PB89	457.0	0	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-0098738_1	1105031.HMPREF1141_1412	114.0	1.51e-27	family 25	N/A
Pfam	UHGV-0098738_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0098738_1	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
PHROG	UHGV-0098738_2	phrog_199	75.5	6.7e-22	holin	lysis
UniRef90	UHGV-0098738_2	UniRef90_A0A3B8UJ75	284.0	0	Holin	N/A
eggNOG-mapper	UHGV-0098738_2	483218.BACPEC_01140	212.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0098738_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0098738_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0098738_2	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0098738_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0098738_4	PF04721	N/A	N/A	N/A	N/A
KOfam	UHGV-0098738_6	K04763	233.1	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0098738_6	phrog_1	181.7	0	integrase	integration and excision
UniRef90	UHGV-0098738_6	UniRef90_A0A6G5YKB8	287.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0098738_6	33035.JPJF01000058_gene3673	264.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0098738_6	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0098738_6	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0098738_6	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0098738_6	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0098738_9	phrog_6616	158.9	0	tail protein	tail
UniRef90	UHGV-0098738_9	UniRef90_A0A8D9PGP3	526.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-0098738_9	1294142.CINTURNW_1706	265.0	0	Phage minor structural protein	N/A
COG	UHGV-0098738_9	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0098738_9	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0098738_10	phrog_1401	46.9	0.00000000000046	N/A	unknown function
structural_annotation	UHGV-0098738_10	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0098738_11	phrog_1194	74.9	9.9e-22	N/A	unknown function
eggNOG-mapper	UHGV-0098738_11	33035.JPJF01000093_gene2242	155.0	0	N/A	N/A
structural_annotation	UHGV-0098738_11	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0098738_12	phrog_1535	287.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0098738_12	UniRef90_A0A1C5PIN9	488.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0098738_12	33035.JPJF01000093_gene2243	376.0	0	phage tail tape measure protein	N/A
COG	UHGV-0098738_12	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0098738_12	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0098738_13	phrog_8355	101.1	3.7e-30	N/A	unknown function
UniRef90	UHGV-0098738_13	UniRef90_UPI0006BBA9AA	143.0	9.59049e-42	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0098738_13	394503.Ccel_3036	119.0	7.18e-33	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0098738_13	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0098738_13	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0098738_14	phrog_8300	72.7	3.7e-21	N/A	unknown function
eggNOG-mapper	UHGV-0098738_14	1151292.QEW_2425	73.9	0.00000000000000118	N/A	N/A
structural_annotation	UHGV-0098738_14	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0098738_15	phrog_820	108.4	4.6e-32	major tail protein	tail
UniRef90	UHGV-0098738_15	UniRef90_T3DDR1	186.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-0098738_15	1151292.QEW_2426	186.0	0	N/A	N/A
structural_annotation	UHGV-0098738_15	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0098738_16	phrog_2595	99.2	3.3e-29	head-tail connector protein	connector
UniRef90	UHGV-0098738_16	UniRef90_UPI001D068DAC	146.0	7.97339e-43	minor capsid protein	N/A
eggNOG-mapper	UHGV-0098738_16	742740.HMPREF9474_03510	130.0	3.21e-37	N/A	N/A
Pfam	UHGV-0098738_16	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0098738_16	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0098738_17	phrog_556	57.2	2.5e-16	minor head protein	head and packaging
eggNOG-mapper	UHGV-0098738_17	483218.BACPEC_01151	136.0	1.21e-39	N/A	N/A
PHROG	UHGV-0098738_18	phrog_8710	125.9	1.6e-37	N/A	unknown function
eggNOG-mapper	UHGV-0098738_18	33035.JPJF01000093_gene2249	105.0	5.65e-28	N/A	N/A
structural_annotation	UHGV-0098738_18	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0098738_19	phrog_541	68.2	1.3e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-0098738_19	483218.BACPEC_01153	144.0	4.13383e-43	N/A	N/A
PHROG	UHGV-0098738_20	phrog_1378	74.2	1.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-0098738_20	742740.HMPREF9474_03506	69.7	0.0000000000000373	N/A	N/A
PHROG	UHGV-0098738_21	phrog_422	359.5	0	major head protein	head and packaging
UniRef90	UHGV-0098738_21	UniRef90_A0A356C4N2	560.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0098738_21	742740.HMPREF9474_03505	475.0	0	N/A	N/A
PHROG	UHGV-0098738_22	phrog_2303	145.2	4.69435e-43	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0098738_22	483218.BACPEC_01156	149.0	3.10948e-42	N/A	N/A
PHROG	UHGV-0098738_23	phrog_355	65.3	9.5e-19	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0098738_23	UniRef90_A0A415G5B2	144.0	8.85621e-43	N/A	N/A
eggNOG-mapper	UHGV-0098738_23	1256908.HMPREF0373_00479	141.0	1.15047e-42	N/A	N/A
Pfam	UHGV-0098738_23	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0098738_23	PF14359	N/A	N/A	N/A	N/A
PHROG	UHGV-0098738_25	phrog_581	244.8	0	minor head protein	head and packaging
UniRef90	UHGV-0098738_25	UniRef90_A0A3D5LQU4	623.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0098738_25	33035.JPJF01000093_gene2255	442.0	0	N/A	N/A
Pfam	UHGV-0098738_25	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0098738_25	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0098738_25	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0098738_26	phrog_533	275.8	0	portal protein	head and packaging
UniRef90	UHGV-0098738_26	UniRef90_A0A3D5LTG9	962.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0098738_26	33035.JPJF01000093_gene2257	571.0	0	N/A	N/A
structural_annotation	UHGV-0098738_26	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0098738_27	K06909	103.4	2.8e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0098738_27	phrog_2	71.5	1.9e-20	terminase large subunit	head and packaging
UniRef90	UHGV-0098738_27	UniRef90_A0A413YU24	901.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0098738_27	1391647.AVSV01000003_gene1802	516.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0098738_27	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0098738_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0098738_27	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0098738_28	K07474	166.5	0	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0098738_28	phrog_51	167.2	0	terminase small subunit	head and packaging
UniRef90	UHGV-0098738_28	UniRef90_A0A356C6K0	325.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0098738_28	1499683.CCFF01000014_gene3916	157.0	0	Terminase small subunit	N/A
Pfam	UHGV-0098738_28	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0098738_28	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0098738_28	PF03592,COG3728	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0098738_29	cluster_138565	103.0	7.14e-30	NA	N/A
structural_annotation	UHGV-0098738_29	PF15968	N/A	N/A	N/A	N/A
PHROG	UHGV-0098738_30	phrog_10865	41.3	0.000000000011	N/A	unknown function
AcrCatalog	UHGV-0098738_30	cluster_211731	154.0	0	NA	N/A
Pfam	UHGV-0098738_30	PF20505	N/A	N/A	N/A	DUF6731
structural_annotation	UHGV-0098738_30	PF20505	N/A	N/A	N/A	N/A
PHROG	UHGV-0098738_31	phrog_36	59.5	7.8e-17	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0098738_31	397290.C810_01391	104.0	1.54e-26	N/A	N/A
structural_annotation	UHGV-0098738_31	PF02996	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0098738_37	478749.BRYFOR_07594	54.7	0.000000416	N/A	N/A
PHROG	UHGV-0098738_39	phrog_1891	187.6	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0098738_39	UniRef90_A0A3D5LV28	545.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0098738_39	1282664.H354_06526	150.0	1.51004e-41	HNH endonuclease	N/A
Pfam	UHGV-0098738_39	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0098738_39	PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-0098738_40	phrog_2044	110.1	8.2e-33	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0098738_40	1449126.JQKL01000051_gene3179	77.4	8.8e-18	N/A	N/A
structural_annotation	UHGV-0098738_40	MF_00337,NF010671,COG1722	N/A	N/A	N/A	N/A
PHROG	UHGV-0098738_41	phrog_17690	103.8	1.1e-30	N/A	unknown function
eggNOG-mapper	UHGV-0098738_41	33035.JPJF01000123_gene2433	90.9	4.42e-22	N/A	N/A
PHROG	UHGV-0098738_42	phrog_7566	96.0	2.2e-28	N/A	unknown function
eggNOG-mapper	UHGV-0098738_42	508419.F8J187_9CAUD	73.6	0.00000000000000102	N/A	N/A
structural_annotation	UHGV-0098738_43	PF02179,NF011863	N/A	N/A	N/A	N/A
KOfam	UHGV-0098738_44	K03469	68.3	1.6e-19	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0098738_44	phrog_531	60.8	2.8e-17	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0098738_44	UniRef90_A0A3B8UHR5	314.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0098738_44	941824.TCEL_01720	77.0	9.26e-16	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0098738_44	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0098738_44	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0098738_44	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0098738_45	phrog_3584	154.5	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0098738_45	642492.Clole_0725	145.0	5.70001e-40	N/A	N/A
structural_annotation	UHGV-0098738_45	PF21578	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0098738_47	1235792.C808_03087	47.0	0.00000413	N/A	N/A
structural_annotation	UHGV-0098738_54	PF08152,NF008362	N/A	N/A	N/A	N/A
KOfam	UHGV-0098738_57	K18830	70.3	4.1e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0098738_57	phrog_8	55.5	0.0000000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-0098738_57	UniRef90_A0A3D5LU86	187.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0098738_57	411470.RUMGNA_00191	107.0	2.25e-28	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0098738_57	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0098738_57	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0098738_57	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0098738_58	K23779	54.3	0.0000000000000031	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0098738_58	phrog_3	47.3	0.00000000000088	transcriptional repressor	transcription regulation
UniRef90	UHGV-0098738_58	UniRef90_A0A3D5LSQ6	124.0	4.61e-36	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0098738_58	411468.CLOSCI_01455	87.8	2.43e-22	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0098738_58	retron_type_VI_hth_cluster2_1	44.8	0.0000000000034	N/A	Retron
Pfam	UHGV-0098738_58	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0098738_58	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0098738_59	UniRef90_UPI001C10501F	273.0	0	SWIM zinc finger domain-containing protein	N/A
eggNOG-mapper	UHGV-0098738_59	525254.HMPREF0072_1328	247.0	0	Swim zinc finger domain protein	N/A
Pfam	UHGV-0098738_59	PF04434	N/A	N/A	SWIM zinc finger	SWIM
KOfam	UHGV-0098738_60	K06400	239.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0098738_60	phrog_95	268.8	0	integrase	integration and excision
UniRef90	UHGV-0098738_60	UniRef90_U2RFE5	582.0	0	Resolvase protein	N/A
eggNOG-mapper	UHGV-0098738_60	1256908.HMPREF0373_00206	582.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0098738_60	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0098738_60	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0098738_60	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0098738_60	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0098738_60	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
COG	UHGV-0098738_61	COG4942	N/A	N/A	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	N/A
KOfam	UHGV-0098738_62	K18908	370.4	0	mepA; multidrug efflux pump	N/A
PHROG	UHGV-0098738_62	phrog_6241	382.9	0	N/A	unknown function
UniRef90	UHGV-0098738_62	UniRef90_B5CMM9	769.0	0	MATE efflux family protein	N/A
eggNOG-mapper	UHGV-0098738_62	471875.RUMLAC_00714	769.0	0	N/A	N/A
Pfam	UHGV-0098738_62	PF01554	N/A	N/A	MatE	MatE
NCBIFam	UHGV-0098738_62	TIGR00797.1	N/A	N/A	MATE family efflux transporter	N/A
COG	UHGV-0098738_62	COG0534	N/A	N/A	Na+-driven multidrug efflux pump, DinF/NorM/MATE family	N/A
structural_annotation	UHGV-0098738_62	PF03023,MF_00400,NF041801,COG0534	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0098738	Yes	39,887	37	64	1
UHGV-1595184	No	11,703	37	25	1