vOTU vOTU-038941

vOTU: vOTU-038941

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-038941
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-01130 → vGENUS-03560 → vOTU-038941
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira rogosae_A
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1896480
Biosample ID	N/A
Genome length (bp)	33,946 bps
CheckV completeness	83.79% (Medium-quality)
CDS count	49
CDS density	91.75%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira rogosae_A	Total connections	205	Host agreement	94.15
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira rogosae_A	Total connections	160	Host agreement	99.38

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 83.79)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1896480_1	476272.RUMHYD_01994	64.7	0.000000000228	N/A	N/A
PHROG	UHGV-1896480_2	phrog_6616	289.3	0	tail protein	tail
UniRef90	UHGV-1896480_2	UniRef90_A0A2Y9BMC1	168.0	9.42e-40	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1896480_2	33035.JPJF01000043_gene1002	144.0	6.32e-33	N/A	N/A
PHROG	UHGV-1896480_3	phrog_1194	69.0	6.3e-20	N/A	unknown function
structural_annotation	UHGV-1896480_3	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1896480_4	phrog_1535	155.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1896480_4	UniRef90_A0A1C5N853	144.0	1.38e-31	Phage-related protein	N/A
eggNOG-mapper	UHGV-1896480_4	1232449.BAHV02000010_gene2723	125.0	2.03e-26	domain protein	N/A
COG	UHGV-1896480_4	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1896480_5	phrog_706	128.8	3.9e-38	N/A	unknown function
UniRef90	UHGV-1896480_5	UniRef90_UPI0011DC8B0C	189.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1896480_5	411459.RUMOBE_01383	178.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1896480_5	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1896480_5	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1896480_6	phrog_11299	107.8	8.2e-32	N/A	unknown function
eggNOG-mapper	UHGV-1896480_6	1298920.KI911353_gene2067	110.0	1.88e-28	N/A	N/A
structural_annotation	UHGV-1896480_6	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-1896480_7	phrog_3099	154.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1896480_7	1160721.RBI_II00532	215.0	0	N/A	N/A
structural_annotation	UHGV-1896480_7	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1896480_8	phrog_3266	72.6	4.9e-21	tail completion	connector
eggNOG-mapper	UHGV-1896480_8	1304866.K413DRAFT_3042	91.3	2.19e-21	N/A	N/A
structural_annotation	UHGV-1896480_8	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1896480_9	phrog_556	90.7	1.1e-26	minor head protein	head and packaging
UniRef90	UHGV-1896480_9	UniRef90_A0A1M7NJ72	124.0	1.2e-33	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1896480_9	1304866.K413DRAFT_3041	107.0	6.1e-28	N/A	N/A
Pfam	UHGV-1896480_9	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1896480_9	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1896480_10	phrog_3366	59.8	3.9e-17	N/A	unknown function
eggNOG-mapper	UHGV-1896480_10	1449050.JNLE01000003_gene3887	83.2	5.86e-19	N/A	N/A
Pfam	UHGV-1896480_10	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1896480_10	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1896480_12	phrog_541	91.0	1e-26	head-tail adaptor	connector
UniRef90	UHGV-1896480_12	UniRef90_A0A371AQT0	97.1	1.63e-23	N/A	N/A
eggNOG-mapper	UHGV-1896480_12	1449050.JNLE01000003_gene3888	82.4	1.42e-18	N/A	N/A
PHROG	UHGV-1896480_13	phrog_10	183.4	0	major head protein	head and packaging
UniRef90	UHGV-1896480_13	UniRef90_UPI00164B7107	448.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1896480_13	411461.DORFOR_00744	434.0	0	COG NOG20168 non supervised orthologous group	N/A
Pfam	UHGV-1896480_13	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1896480_13	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1896480_13	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1896480_13	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1896480_14	phrog_2303	96.7	2.7e-28	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1896480_14	1235792.C808_05367	144.0	3.64996e-41	N/A	N/A
structural_annotation	UHGV-1896480_14	PF10788,MF_02110	N/A	N/A	N/A	N/A
KOfam	UHGV-1896480_15	K07584	89.2	5.5e-26	N/A	N/A
PHROG	UHGV-1896480_15	phrog_4478	64.5	1.3e-18	peptidase	other
UniRef90	UHGV-1896480_15	UniRef90_A0A8J8ASZ6	77.8	1.54e-16	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-1896480_15	1499689.CCNN01000006_gene591	72.0	0.00000000000000479	Cysteine protease Prp	N/A
Pfam	UHGV-1896480_15	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-1896480_15	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1896480_15	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1896480_16	phrog_581	101.8	8e-30	minor head protein	head and packaging
UniRef90	UHGV-1896480_16	UniRef90_J0WZ11	66.6	0.0000000000269	Phage minor capsid protein 2 domain protein	N/A
eggNOG-mapper	UHGV-1896480_16	1449050.JNLE01000003_gene3892	139.0	7.8e-38	Phage minor capsid protein 2	N/A
Pfam	UHGV-1896480_16	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1896480_16	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1896480_17	phrog_1760	111.8	7.7e-33	anti-termination protein	transcription regulation
UniRef90	UHGV-1896480_17	UniRef90_A0A1C5VLT1	260.0	0	ORF6N domain	N/A
eggNOG-mapper	UHGV-1896480_17	476272.RUMHYD_02879	198.0	0	ORF6N domain	N/A
Pfam	UHGV-1896480_17	PF10543	N/A	N/A	ORF6N domain	ORF6N
structural_annotation	UHGV-1896480_17	PF10543,PF13058,TIGR02681,COG3646,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-1896480_18	UniRef90_UPI00174DD543	62.4	0.00000000000931	CopG family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1896480_18	445971.ANASTE_00673	45.8	0.00000652	N/A	N/A
structural_annotation	UHGV-1896480_18	PF01402,NF041793,COG4710	N/A	N/A	N/A	N/A
UniRef90	UHGV-1896480_21	UniRef90_A8MHZ5	76.6	4.14e-17	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1896480_21	350688.Clos_1887	76.6	6.95e-18	N/A	N/A
PHROG	UHGV-1896480_23	phrog_581	215.7	0	minor head protein	head and packaging
UniRef90	UHGV-1896480_23	UniRef90_UPI001593C099	285.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1896480_23	411462.DORLON_00794	216.0	0	N/A	N/A
Pfam	UHGV-1896480_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1896480_23	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1896480_24	phrog_533	380.7	0	portal protein	head and packaging
UniRef90	UHGV-1896480_24	UniRef90_UPI00156E473F	555.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1896480_24	411461.DORFOR_00749	469.0	0	COG NOG25118 non supervised orthologous group	N/A
Pfam	UHGV-1896480_24	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1896480_24	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1896480_25	K06909	222.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1896480_25	phrog_2	122.2	6.8e-36	terminase large subunit	head and packaging
UniRef90	UHGV-1896480_25	UniRef90_A0A1C5QTK5	623.0	0	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	N/A
eggNOG-mapper	UHGV-1896480_25	411461.DORFOR_00750	600.0	0	COG COG1783 Phage terminase large subunit	N/A
Pfam	UHGV-1896480_25	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-1896480_25	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1896480_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1896480_25	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1896480_26	K07474	128.6	7.7e-38	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1896480_26	phrog_2606	295.5	0	terminase small subunit	head and packaging
UniRef90	UHGV-1896480_26	UniRef90_A0A6B4XMY8	296.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1896480_26	1415774.U728_838	296.0	0	terminase, small subunit	N/A
Pfam	UHGV-1896480_26	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
Pfam	UHGV-1896480_26	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1896480_26	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1896480_26	PF03592,PF10668,NF040601,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1896480_27	phrog_36	53.5	0.000000000000004	transcriptional regulator	transcription regulation
UniRef90	UHGV-1896480_27	UniRef90_A0A1C6LD55	54.7	0.00000202	RNA polymerase sigma factor, sigma-70 family	N/A
eggNOG-mapper	UHGV-1896480_27	397290.C810_01391	84.3	1.89e-18	N/A	N/A
PHROG	UHGV-1896480_30	phrog_625	67.7	1e-19	N/A	unknown function
UniRef90	UHGV-1896480_30	UniRef90_A0A413YU40	182.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1896480_30	397290.C810_01502	133.0	1.02e-38	N/A	N/A
structural_annotation	UHGV-1896480_30	PF04322,NF003443	N/A	N/A	N/A	N/A
PHROG	UHGV-1896480_31	phrog_355	73.9	1.9e-21	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1896480_31	UniRef90_UPI0002D32D58	58.5	0.0000000186	N/A	N/A
eggNOG-mapper	UHGV-1896480_31	1095772.CAHH01000052_gene252	58.5	0.00000000313	N/A	N/A
Pfam	UHGV-1896480_31	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-1896480_31	PF14359,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-1896480_32	phrog_15077	107.2	2.5e-31	N/A	unknown function
UniRef90	UHGV-1896480_32	UniRef90_A0A3E3IZW1	200.0	0	N/A	N/A
eggNOG-mapper	UHGV-1896480_32	483218.BACPEC_01165	224.0	0	N/A	N/A
structural_annotation	UHGV-1896480_32	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-1896480_33	phrog_8470	300.8	0	N/A	unknown function
UniRef90	UHGV-1896480_33	UniRef90_UPI00164C094F	228.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1896480_33	483218.BACPEC_01166	405.0	0	PcfJ-like protein	N/A
Pfam	UHGV-1896480_33	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1896480_33	PF14284	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1896480_34	483218.BACPEC_01167	194.0	0	N/A	N/A
KOfam	UHGV-1896480_35	K03469	79.9	4.4e-23	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-1896480_35	phrog_531	73.0	4.2e-21	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1896480_35	UniRef90_A0A350VVB3	117.0	6.86e-31	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1896480_35	665950.HMPREF1025_02551	85.1	4.62e-19	RNase H	N/A
Pfam	UHGV-1896480_35	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1896480_35	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1896480_35	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-1896480_36	phrog_3584	154.3	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1896480_36	483218.BACPEC_01173	284.0	0	N/A	N/A
structural_annotation	UHGV-1896480_36	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-1896480_39	phrog_585	121.4	5e-36	N/A	unknown function
UniRef90	UHGV-1896480_39	UniRef90_UPI001C66A3AC	132.0	2.03e-37	N/A	N/A
eggNOG-mapper	UHGV-1896480_39	1035189.HMPREF9954_1966	125.0	2.78e-35	N/A	N/A
Pfam	UHGV-1896480_39	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-1896480_39	PF10711,MF_01819,TIGR03433,COG3432	N/A	N/A	N/A	N/A
UniRef90	UHGV-1896480_42	UniRef90_A0A6L5P685	72.0	0.00000000000000414	N/A	N/A
eggNOG-mapper	UHGV-1896480_42	171693.BN988_01635	68.9	0.0000000000000115	N/A	N/A
Pfam	UHGV-1896480_42	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-1896480_42	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1896480_42	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1896480_43	phrog_3	42.2	0.000000000031	transcriptional repressor	transcription regulation
UniRef90	UHGV-1896480_43	UniRef90_UPI00041C3C71	116.0	1.9e-32	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1896480_43	1120998.AUFC01000030_gene2205	97.8	5.04e-26	Helix-turn-helix	N/A
Pfam	UHGV-1896480_43	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1896480_43	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1896480_44	K22300	61.1	2.5e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1896480_44	phrog_8	65.0	1.7e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1896480_44	UniRef90_A0A3A9CUU7	159.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1896480_44	1120998.AUFC01000030_gene2204	118.0	3.97e-32	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1896480_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1896480_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1896480_44	PF13560,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1896480_45	phrog_87	81.3	9.7e-24	metallo-protease	other
UniRef90	UHGV-1896480_45	UniRef90_UPI0015EBCD4F	204.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1896480_45	397288.C806_00132	200.0	0	Zn peptidase	N/A
Pfam	UHGV-1896480_45	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1896480_45	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1896480_45	PF06114,COG2856	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1896480_46	887929.HMP0721_1293	61.6	0.000000000222	N/A	N/A
structural_annotation	UHGV-1896480_46	PF16538	N/A	N/A	N/A	N/A
PHROG	UHGV-1896480_47	phrog_2158	220.0	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1896480_47	UniRef90_UPI001593E0D0	384.0	0	Abi family protein	N/A
eggNOG-mapper	UHGV-1896480_47	1235792.C808_03102	342.0	0	Abi-like protein	N/A
PADLOC	UHGV-1896480_47	AbiD	136.8	3.3e-40	AbiD	Abi
Pfam	UHGV-1896480_47	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-1896480_47	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-1896480_47	PF07751,COG4823	N/A	N/A	N/A	N/A
KOfam	UHGV-1896480_48	K14623	106.2	4.1e-31	dinD; DNA-damage-inducible protein D	N/A
PHROG	UHGV-1896480_48	phrog_15286	381.6	0	N/A	unknown function
UniRef90	UHGV-1896480_48	UniRef90_A0A3A6HZL1	374.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1896480_48	1232452.BAIB02000007_gene1654	375.0	0	N/A	N/A
Pfam	UHGV-1896480_48	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1896480_48	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1896480_48	PF09669,NF008573,COG3617	N/A	N/A	N/A	N/A
KOfam	UHGV-1896480_49	K06400	370.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1896480_49	phrog_95	362.0	0	integrase	integration and excision
UniRef90	UHGV-1896480_49	UniRef90_A0A413YU13	845.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1896480_49	411462.DORLON_00823	446.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1896480_49	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1896480_49	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1896480_49	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1896480_49	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1896480_49	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1896480	Yes	33,946	36	84	1
UHGV-0048198	No	21,891	35	55	1