vOTU vOTU-039888

vOTU: vOTU-039888

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-039888
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00367 → vOTU-039888
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0125585
Biosample ID	SAMN00791967
Genome length (bp)	29,880 bps
CheckV completeness	65.79% (Medium-quality)
CDS count	56
CDS density	75.99%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	Total connections	432	Host agreement	98.61
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	Total connections	19	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 65.79)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0125585_1	K03092	392.5	0	rpoN; RNA polymerase sigma-54 factor	N/A
UniRef90	UHGV-0125585_1	UniRef90_A0A174GJ87	761.0	0	RNA polymerase factor sigma-54	N/A
eggNOG-mapper	UHGV-0125585_1	742738.HMPREF9460_00772	761.0	0	Sigma-54 factor, core binding domain	N/A
Pfam	UHGV-0125585_1	PF00309	N/A	N/A	Sigma-54 factor, Activator interacting domain (AID)	Sigma54_AID
Pfam	UHGV-0125585_1	PF04963	N/A	N/A	Sigma-54 factor, core binding domain	Sigma54_CBD
Pfam	UHGV-0125585_1	PF04552	N/A	N/A	Sigma-54, DNA binding domain	Sigma54_DBD
NCBIFam	UHGV-0125585_1	TIGR02395.1	N/A	N/A	RNA polymerase factor sigma-54	N/A
COG	UHGV-0125585_1	COG1508	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog	N/A
KOfam	UHGV-0125585_2	K03090	44.1	0.000000000003	sigB; RNA polymerase sigma-B factor	N/A
UniRef90	UHGV-0125585_2	UniRef90_A0A096BCH3	204.0	0	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0125585_2	742738.HMPREF9460_00773	204.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-0125585_2	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
NCBIFam	UHGV-0125585_2	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0125585_2	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
eggNOG-mapper	UHGV-0125585_3	742738.HMPREF9460_00774	144.0	2.8026e-44	N/A	N/A
KOfam	UHGV-0125585_5	K14059	247.2	0	int; integrase	N/A
PHROG	UHGV-0125585_5	phrog_1	219.0	0	integrase	integration and excision
UniRef90	UHGV-0125585_5	UniRef90_A0A174GHX2	744.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0125585_5	665956.HMPREF1032_02930	117.0	9.03e-27	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0125585_5	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0125585_5	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0125585_5	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0125585_5	PF00589,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0125585_6	phrog_2158	199.8	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0125585_6	UniRef90_UPI0018980930	672.0	0	Abi family protein	N/A
eggNOG-mapper	UHGV-0125585_6	515620.EUBELI_20300	334.0	0	Abi-like protein	N/A
PADLOC	UHGV-0125585_6	AbiD	136.2	5.30001e-40	AbiD	Abi
Pfam	UHGV-0125585_6	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-0125585_6	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-0125585_6	PF07751,COG4823	N/A	N/A	N/A	N/A
KOfam	UHGV-0125585_7	K01356	151.2	1.26117e-44	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0125585_7	phrog_4	110.9	1.6e-32	transcriptional repressor	transcription regulation
UniRef90	UHGV-0125585_7	UniRef90_UPI00189C4EA1	431.0	0	transcriptional repressor LexA	N/A
eggNOG-mapper	UHGV-0125585_7	411490.ANACAC_00815	157.0	1.4013e-45	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0125585_7	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
Pfam	UHGV-0125585_7	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
NCBIFam	UHGV-0125585_7	TIGR00498.1	N/A	N/A	transcriptional repressor LexA	N/A
COG	UHGV-0125585_7	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0125585_7	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-0125585_8	K22300	47.4	0.00000000000041	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0125585_8	UniRef90_UPI00189A2EE0	135.0	3.06e-40	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0125585_8	411469.EUBHAL_01993	73.6	2.05e-16	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0125585_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0125585_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0125585_8	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0125585_9	PF10711,TIGR03433	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0125585_11	PF18186,NF033632	N/A	N/A	N/A	N/A
PHROG	UHGV-0125585_15	phrog_9562	119.5	4.3e-36	N/A	unknown function
UniRef90	UHGV-0125585_15	UniRef90_A0A6N3FDD3	276.0	0	Pentapeptide repeats (8 copies)	N/A
eggNOG-mapper	UHGV-0125585_15	1232443.BAIA02000078_gene49	177.0	0	Pentapeptide repeat protein	N/A
Pfam	UHGV-0125585_15	PF19062	N/A	N/A	N/A	DUF5758
COG	UHGV-0125585_15	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0125585_15	PF19062	N/A	N/A	N/A	N/A
PHROG	UHGV-0125585_17	phrog_253	95.5	6.2e-28	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0125585_17	UniRef90_A0A1C5N4H2	172.0	0	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0125585_17	411470.RUMGNA_02192	131.0	5.87e-37	Siphovirus Gp157	N/A
Pfam	UHGV-0125585_17	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0125585_17	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0125585_18	phrog_14970	198.9	0	N/A	unknown function
UniRef90	UHGV-0125585_18	UniRef90_UPI00164BFA28	171.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0125585_18	411469.EUBHAL_02677	149.0	9.87915e-43	double-strand break repair protein	N/A
Pfam	UHGV-0125585_18	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0125585_18	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0125585_18	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0125585_19	phrog_1389	76.6	3.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0125585_19	1347392.CCEZ01000060_gene3269	85.5	4.13e-20	N/A	N/A
structural_annotation	UHGV-0125585_19	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
KOfam	UHGV-0125585_20	K03111	146.6	2.60642e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0125585_20	phrog_44	148.6	3.50325e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0125585_20	UniRef90_A0A1C7FSG7	264.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0125585_20	445972.ANACOL_00151	168.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0125585_20	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0125585_20	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0125585_20	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0125585_20	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0125585_20	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0125585_21	phrog_15768	89.0	8.5e-26	N/A	unknown function
eggNOG-mapper	UHGV-0125585_21	203119.Cthe_2466	95.1	2.71e-22	N/A	N/A
KOfam	UHGV-0125585_22	K17680	175.0	0	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-0125585_22	phrog_239	155.5	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0125585_22	UniRef90_A0A1C7FRV3	847.0	0	SF4 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-0125585_22	1378168.N510_01441	390.0	0	N/A	N/A
Pfam	UHGV-0125585_22	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0125585_22	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0125585_22	PF03796,MF_04154,NF006606,COG0467	N/A	N/A	N/A	N/A
PHROG	UHGV-0125585_24	phrog_4632	53.1	1.3e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0125585_24	UniRef90_A0A1V5ZUM0	106.0	4.78e-27	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0125585_24	556263.FSEG_00477	62.4	0.0000000000863	N/A	N/A
structural_annotation	UHGV-0125585_24	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0125585_25	PF12759	N/A	N/A	N/A	N/A
KOfam	UHGV-0125585_26	K00558	158.5	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0125585_26	phrog_363	254.6	0	DNA methyltransferase	other
UniRef90	UHGV-0125585_26	UniRef90_A0A6I2QZV1	630.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0125585_26	742738.HMPREF9460_04053	625.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0125585_26	MTase_II_00058	125.8	6.4e-37	Type II methyltransferase	RM
Pfam	UHGV-0125585_26	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0125585_26	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0125585_26	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0125585_26	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-0125585_27	UniRef90_A0A4D7ANR2	92.4	1.56e-22	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-0125585_27	742738.HMPREF9460_04054	73.2	9.33e-16	Restriction alleviation protein Lar	N/A
structural_annotation	UHGV-0125585_27	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0125585_29	phrog_10714	59.8	4.4e-17	N/A	unknown function
UniRef90	UHGV-0125585_29	UniRef90_UPI001C3A10B1	74.3	0.00000000000000542	Zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-0125585_29	742738.HMPREF9460_04055	103.0	1.69e-27	N/A	N/A
Pfam	UHGV-0125585_29	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
PHROG	UHGV-0125585_31	phrog_25732	124.3	2.9e-38	N/A	unknown function
UniRef90	UHGV-0125585_31	UniRef90_UPI001898061F	227.0	0	N/A	N/A
Pfam	UHGV-0125585_31	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0125585_31	PF21327,NF011240	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0125585_35	665956.HMPREF1032_03087	90.9	9.7e-22	N/A	N/A
PHROG	UHGV-0125585_37	phrog_22543	123.5	1.3e-37	N/A	unknown function
PHROG	UHGV-0125585_40	phrog_8684	54.2	0.0000000000000019	N/A	unknown function
UniRef90	UHGV-0125585_40	UniRef90_A0A1C7FQJ0	143.0	8.06994e-41	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0125585_40	1226322.HMPREF1545_00036	54.3	0.000000354	YopX protein	N/A
structural_annotation	UHGV-0125585_40	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0125585_41	phrog_924	50.1	0.000000000000048	N/A	unknown function
UniRef90	UHGV-0125585_41	UniRef90_UPI00195D1DCA	175.0	0	N/A	N/A
Pfam	UHGV-0125585_41	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0125585_41	PF04448	N/A	N/A	N/A	N/A
KOfam	UHGV-0125585_43	K04487	363.9	0	iscS, NFS1; cysteine desulfurase [EC:2.8.1.7]	N/A
PHROG	UHGV-0125585_43	phrog_12787	393.3	0	N/A	unknown function
UniRef90	UHGV-0125585_43	UniRef90_A0A6I7GH67	622.0	0	Cysteine desulfurase	N/A
eggNOG-mapper	UHGV-0125585_43	935948.KE386495_gene2114	275.0	0	Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins	N/A
PADLOC	UHGV-0125585_43	SspA_00001	302.8	0	SspA	SSP
Pfam	UHGV-0125585_43	PF00266	N/A	N/A	Aminotransferase class-V	Aminotran_5
COG	UHGV-0125585_43	COG1104	N/A	N/A	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	N/A
structural_annotation	UHGV-0125585_43	PF00266,MF_00331,TIGR03403,COG1104	N/A	N/A	N/A	N/A
PHROG	UHGV-0125585_45	phrog_22389	108.2	2.3e-32	N/A	unknown function
structural_annotation	UHGV-0125585_45	PF01402,COG4710	N/A	N/A	N/A	N/A
UniRef90	UHGV-0125585_46	UniRef90_UPI0019597901	53.5	0.00000747	replication/maintenance protein RepL	N/A
Pfam	UHGV-0125585_47	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
structural_annotation	UHGV-0125585_50	PF20549,COG4728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0125585_51	411901.BACCAC_01162	49.7	0.000000174	N/A	N/A
PHROG	UHGV-0125585_55	phrog_13890	86.0	8.6e-30	N/A	unknown function
UniRef90	UHGV-0125585_55	UniRef90_G9YP46	248.0	0	Arc-like DNA-binding protein	N/A
eggNOG-mapper	UHGV-0125585_55	1378168.N510_00539	75.9	1.62e-16	N/A	N/A
Pfam	UHGV-0125585_55	PF03869	N/A	N/A	Arc-like DNA binding domain	Arc
KOfam	UHGV-0125585_56	K07496	97.5	1.9e-28	K07496; putative transposase	N/A
PHROG	UHGV-0125585_56	phrog_13964	154.9	0	transposase	integration and excision
UniRef90	UHGV-0125585_56	UniRef90_UPI00192198F7	211.0	0	RNA-guided endonuclease TnpB family protein	N/A
eggNOG-mapper	UHGV-0125585_56	1200792.AKYF01000019_gene4463	120.0	2.67e-31	Transposase	N/A
Pfam	UHGV-0125585_56	PF12323	N/A	N/A	Helix-turn-helix domain	HTH_OrfB_IS605
COG	UHGV-0125585_56	COG0675	N/A	N/A	Transposase	N/A
structural_annotation	UHGV-0125585_56	PF12323	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0125585	Yes	29,880	52	66	1
UHGV-1744812	No	10,827	52	24	1