vOTU vOTU-040045

vOTU: vOTU-040045

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-040045
Number of genomes	6
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Eubacterium_F → Eubacterium_F sp003491505
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-08525 → vGENUS-23812 → vOTU-040045
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Eubacterium_F → Eubacterium_F sp003491505
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1762319
Biosample ID	N/A
Genome length (bp)	17,354 bps
CheckV completeness	50.06% (Medium-quality)
CDS count	21
CDS density	98.61%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage		Total connections		Host agreement
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Eubacterium_F → Eubacterium_F sp003491505	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 50.06)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1762319_1	phrog_361	77.7	1.6e-22	terminase small subunit	head and packaging
UniRef90	UHGV-1762319_1	UniRef90_A0A1C6H6I9	156.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-1762319_1	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-1762319_1	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1762319_1	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1762319_2	phrog_9	300.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1762319_2	UniRef90_A0A1Y4R6J8	1005.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1762319_2	1226322.HMPREF1545_00113	882.0	0	Phage Terminase	N/A
Pfam	UHGV-1762319_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1762319_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1762319_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1762319_2	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1762319_3	phrog_12	188.6	0	portal protein	head and packaging
UniRef90	UHGV-1762319_3	UniRef90_A0A1Y4R7B9	618.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1762319_3	1226322.HMPREF1545_00114	512.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1762319_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1762319_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1762319_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1762319_3	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1762319_4	K06904	153.8	1.4013e-45	N/A	N/A
PHROG	UHGV-1762319_4	phrog_80	175.7	0	head maturation protease	head and packaging
UniRef90	UHGV-1762319_4	UniRef90_UPI0008716C68	171.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1762319_4	33035.JPJF01000039_gene272	149.0	7.06254e-43	Caudovirus prohead serine protease	N/A
Pfam	UHGV-1762319_4	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1762319_4	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1762319_4	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1762319_4	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1762319_5	phrog_10	203.9	0	major head protein	head and packaging
UniRef90	UHGV-1762319_5	UniRef90_A0A1C6CI17	714.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-1762319_5	1226322.HMPREF1545_00116	629.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1762319_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-1762319_5	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-1762319_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1762319_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1762319_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1762319_6	phrog_2550	80.6	1e-23	N/A	unknown function
UniRef90	UHGV-1762319_6	UniRef90_R5V091	56.2	0.0000000261	Phage related protein	N/A
eggNOG-mapper	UHGV-1762319_6	1235798.C817_04586	97.8	2.21e-25	N/A	N/A
structural_annotation	UHGV-1762319_6	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1762319_7	phrog_19734	122.4	2.5e-36	N/A	unknown function
UniRef90	UHGV-1762319_7	UniRef90_A0A3R6AW46	125.0	5.88e-35	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-1762319_7	1235798.C817_04587	120.0	8.53e-34	N/A	N/A
structural_annotation	UHGV-1762319_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1762319_8	1235798.C817_04588	124.0	2.16e-35	N/A	N/A
structural_annotation	UHGV-1762319_8	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1762319_9	phrog_5	50.7	0.000000000000043	tail completion or Neck1 protein	connector
UniRef90	UHGV-1762319_9	UniRef90_R6UNR2	159.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1762319_9	1235798.C817_04589	189.0	0	N/A	N/A
structural_annotation	UHGV-1762319_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1762319_10	phrog_88	68.5	1.2e-19	major tail protein	tail
UniRef90	UHGV-1762319_10	UniRef90_A0A3D1FL93	207.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1762319_10	33035.JPJF01000039_gene278	182.0	0	N/A	N/A
Pfam	UHGV-1762319_10	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-1762319_10	PF06488,PF18316,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1762319_11	1235798.C817_04591	92.0	5.29e-22	N/A	N/A
structural_annotation	UHGV-1762319_11	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1762319_12	phrog_23464	247.6	0	N/A	unknown function
eggNOG-mapper	UHGV-1762319_12	33035.JPJF01000023_gene3232	258.0	0	phage tail tape measure protein	N/A
COG	UHGV-1762319_12	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1762319_12	PF20155,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1762319_13	phrog_33	64.4	2.9e-18	distal tail protein Dit	tail
UniRef90	UHGV-1762319_13	UniRef90_A0A3R6C171	239.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1762319_13	1235798.C817_02569	247.0	0	tail component	N/A
NCBIFam	UHGV-1762319_13	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1762319_13	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1762319_13	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1762319_14	phrog_13289	451.7	0	tail protein	tail
UniRef90	UHGV-1762319_14	UniRef90_R6ERY2	639.0	0	Phage minor structural protein N-terminal region	N/A
eggNOG-mapper	UHGV-1762319_14	1235798.C817_02568	512.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1762319_14	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1762319_14	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1762319_14	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-1762319_14	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1762319_15	phrog_19280	97.1	1.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-1762319_15	1235798.C817_04596	94.0	1.22e-17	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-1762319_15	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-1762319_16	phrog_2712	41.9	0.000000000012	tail fiber protein	tail
KOfam	UHGV-1762319_19	K01447	133.4	2.2e-39	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1762319_19	phrog_1794	146.3	2.70451e-43	amidase	lysis
UniRef90	UHGV-1762319_19	UniRef90_A0A1M7YM81	194.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1762319_19	592031.GCWU000322_00093	164.0	0	Ami_2	N/A
Pfam	UHGV-1762319_19	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1762319_19	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1762319_19	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1762319_19	PF01510,PF01471,MF_04111,NF008758,COG5632,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-1762319_21	phrog_962	56.3	5.9e-16	holin	lysis
UniRef90	UHGV-1762319_21	UniRef90_A0A2V2EMI6	89.0	9.66e-22	Phage holin	N/A
eggNOG-mapper	UHGV-1762319_21	1120998.AUFC01000030_gene2252	80.5	3.01e-19	Bacteriophage holin	N/A
Pfam	UHGV-1762319_21	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1762319_21	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1762319_21	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1762319_21	PF04531	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1762319	Yes	17,354	44	50	1
UHGV-1769007	No	16,538	44	47	1
UHGV-1951352	No	13,760	44	40	1
UHGV-0203391	No	13,710	44	40	1
UHGV-1797486	No	13,710	44	40	1
UHGV-1806690	No	13,710	44	40	1