vOTU vOTU-041142

vOTU: vOTU-041142

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-041142
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-02726 → vGENUS-04837 → vOTU-041142
Host lineage	Bacteria → Firmicutes_A → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → Eubacterium callanderi
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1944932
Biosample ID	N/A
Genome length (bp)	27,515 bps
CheckV completeness	70.66% (Medium-quality)
CDS count	48
CDS density	93.75%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → Eubacterium callanderi	Total connections	33	Host agreement	87.88
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → Eubacterium callanderi	Total connections	5	Host agreement	80

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 70.66)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1944932_1	UniRef90_A0A1H0WI17	158.0	0	DNA binding domain-containing protein, excisionase family	N/A
Pfam	UHGV-1944932_1	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1944932_1	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-1944932_1	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
UniRef90	UHGV-1944932_4	UniRef90_A0A1H0W5D6	144.0	7.00649e-44	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1944932_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1944932_4	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-1944932_4	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1944932_5	phrog_8	56.4	6.7e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1944932_5	UniRef90_A0A1H0W5S2	160.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1944932_5	397290.C810_01482	90.9	3.29e-23	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1944932_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1944932_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1944932_5	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1944932_7	phrog_7940	219.4	0	N/A	unknown function
UniRef90	UHGV-1944932_7	UniRef90_A0A1H0W5C8	514.0	0	BRO family, N-terminal domain	N/A
eggNOG-mapper	UHGV-1944932_7	546271.Selsp_1341	231.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1944932_7	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1944932_7	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1944932_7	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-1944932_13	UniRef90_A0A1H0WBV9	150.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1944932_13	742765.HMPREF9457_03440	50.1	0.000000986	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1944932_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1944932_13	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1944932_13	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1944932_14	phrog_8	55.8	0.0000000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-1944932_14	UniRef90_A0A1H0WAW2	192.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1944932_14	1235793.C809_01899	124.0	3.33e-36	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1944932_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1944932_14	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1944932_14	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1944932_18	phrog_3584	203.4	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1944932_18	887929.HMP0721_1280	171.0	0	N/A	N/A
structural_annotation	UHGV-1944932_18	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-1944932_20	K07741	51.9	0.000000000000024	antB; anti-repressor protein	N/A
PHROG	UHGV-1944932_20	phrog_4608	124.8	6.6e-37	anti-repressor	transcription regulation
UniRef90	UHGV-1944932_20	UniRef90_A0A1H0WAW8	501.0	0	Phage antirepressor protein YoqD, KilAC domain	N/A
eggNOG-mapper	UHGV-1944932_20	1122147.AUEH01000021_gene610	149.0	3.56995e-41	SOS response	N/A
Pfam	UHGV-1944932_20	PF10543	N/A	N/A	ORF6N domain	ORF6N
Pfam	UHGV-1944932_20	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1944932_20	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
structural_annotation	UHGV-1944932_20	PF03374,PF10543,TIGR02681,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-1944932_23	phrog_843	75.6	4.5e-22	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1944932_23	UniRef90_A0A1H0W5Y9	204.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-1944932_23	411483.FAEPRAA2165_01882	89.0	2.49e-20	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-1944932_23	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-1944932_23	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
PHROG	UHGV-1944932_28	phrog_1558	184.0	0	N/A	unknown function
UniRef90	UHGV-1944932_28	UniRef90_A0A6N2ZQR4	352.0	0	HTH_11 domain-containing protein	N/A
eggNOG-mapper	UHGV-1944932_28	1235802.C823_01038	135.0	9.63e-38	N/A	N/A
Pfam	UHGV-1944932_28	PF08279	N/A	N/A	HTH domain	HTH_11
structural_annotation	UHGV-1944932_28	TIGR01637,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1944932_29	K23779	40.8	0.000000000039	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
UniRef90	UHGV-1944932_29	UniRef90_A0A6N2ZL57	129.0	3.6e-38	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1944932_29	1304866.K413DRAFT_0788	72.4	3.03e-16	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1944932_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1944932_29	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1944932_30	K06223	52.8	0.0000000000000061	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-1944932_30	phrog_56	72.0	1.1e-20	DNA methyltransferase	other
UniRef90	UHGV-1944932_30	UniRef90_A0A4P9C9V2	486.0	0	Site-specific DNA-methyltransferase (adenine-specific)	N/A
eggNOG-mapper	UHGV-1944932_30	1051985.l11_17040	63.2	0.00000000878	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-1944932_30	MTase_II_00054	45.7	0.0000000000014	Type II methyltransferase	RM
Pfam	UHGV-1944932_30	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-1944932_30	COG3392	N/A	N/A	Adenine-specific DNA methylase	N/A
PHROG	UHGV-1944932_32	phrog_119	72.9	4.1e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1944932_32	UniRef90_A0A1H0WDX3	227.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1944932_32	610130.Closa_0739	156.0	0	HNH nucleases	N/A
Pfam	UHGV-1944932_32	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1944932_32	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1944932_35	phrog_9	270.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1944932_35	UniRef90_A0A1H0WDQ8	1129.0	0	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
eggNOG-mapper	UHGV-1944932_35	1235798.C817_02581	578.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-1944932_35	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1944932_35	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1944932_35	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1944932_35	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1944932_36	phrog_12	116.3	1.9e-34	portal protein	head and packaging
UniRef90	UHGV-1944932_36	UniRef90_A0A1H0WEE9	800.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-1944932_36	349161.Dred_2606	375.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1944932_36	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1944932_36	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1944932_36	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1944932_36	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1944932_37	K01358	141.7	6.39973e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1944932_37	phrog_94	254.1	0	head maturation protease	head and packaging
UniRef90	UHGV-1944932_37	UniRef90_A0A6N2ZRR0	509.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1944932_37	349161.Dred_2605	295.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1944932_37	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1944932_37	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1944932_37	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1944932_38	phrog_10	115.1	4.9e-34	major head protein	head and packaging
UniRef90	UHGV-1944932_38	UniRef90_A0A1H0WDJ5	893.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-1944932_38	1235792.C808_00086	538.0	0	Phage capsid family	N/A
Pfam	UHGV-1944932_38	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-1944932_38	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-1944932_38	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1944932_38	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1944932_38	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1944932_39	phrog_749	84.0	1.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-1944932_39	349161.Dred_2603	138.0	2.34998e-41	N/A	N/A
PHROG	UHGV-1944932_40	phrog_19734	50.6	0.000000000000025	N/A	unknown function
eggNOG-mapper	UHGV-1944932_40	610130.Closa_0746	73.2	0.00000000000000375	N/A	N/A
UniRef90	UHGV-1944932_41	UniRef90_A0A1H0WFA3	154.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
eggNOG-mapper	UHGV-1944932_41	1497679.EP56_05750	117.0	1.29e-32	N/A	N/A
Pfam	UHGV-1944932_41	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1944932_41	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1944932_42	phrog_78	53.4	0.000000000000005	tail terminator	connector
eggNOG-mapper	UHGV-1944932_42	1158604.I591_01762	110.0	6.82e-30	N/A	N/A
structural_annotation	UHGV-1944932_42	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1944932_43	phrog_88	172.1	0	major tail protein	tail
UniRef90	UHGV-1944932_43	UniRef90_A0A1H0WFC2	397.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1944932_43	1497679.EP56_05760	264.0	0	phage tail protein	N/A
NCBIFam	UHGV-1944932_43	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1944932_43	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1944932_44	phrog_709	120.5	5.6e-37	N/A	unknown function
UniRef90	UHGV-1944932_44	UniRef90_A0A1E5GU35	110.0	1.49e-27	Rho_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1944932_44	1497679.EP56_05775	122.0	1.97e-33	N/A	N/A
structural_annotation	UHGV-1944932_44	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1944932_45	phrog_5755	430.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1944932_45	UniRef90_A0A6N2ZSZ1	1707.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-1944932_45	638301.HMPREF0444_1498	539.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1944932_45	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1944932_45	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1944932_45	PF10145,MF_04138,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1944932_46	phrog_33	96.3	4.9e-28	distal tail protein Dit	tail
UniRef90	UHGV-1944932_46	UniRef90_A0A1H0WHV5	505.0	0	Putative phage tail component, N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1944932_46	562981.HMPREF0428_00971	109.0	4.12e-26	phage tail	N/A
Pfam	UHGV-1944932_46	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-1944932_46	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1944932_46	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1944932_46	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1944932_47	phrog_1067	398.1	0	minor head protein	head and packaging
UniRef90	UHGV-1944932_47	UniRef90_A0A6N2ZS53	1371.0	0	Prophage endopeptidase tail	N/A
eggNOG-mapper	UHGV-1944932_47	1160721.RBI_I01574	387.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1944932_47	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1944932_47	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1944932_47	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1944932_47	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1944932_48	phrog_19280	76.0	3.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-1944932_48	1160721.RBI_I01572	70.1	0.00000000000338	N/A	N/A
Pfam	UHGV-1944932_48	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1944932	Yes	27,515	46	71	1
UHGV-0074738	No	16,618	46	43	1