vOTU vOTU-041378

vOTU: vOTU-041378

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-041378
Number of genomes	6
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00027 → vGENUS-08661 → vOTU-041378
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2203186
Biosample ID	N/A
Genome length (bp)	37,075 bps
CheckV completeness	79.89% (Medium-quality)
CDS count	52
CDS density	93.74%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1186	Host agreement	82.88
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	368	Host agreement	95.38

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 79.89)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2203186_1	K14059	138.9	6.40001e-41	int; integrase	N/A
PHROG	UHGV-2203186_1	phrog_1	133.9	1.7e-39	integrase	integration and excision
UniRef90	UHGV-2203186_1	UniRef90_A0A373XME4	411.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-2203186_1	428125.CLOLEP_02743	153.0	6.16011e-42	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-2203186_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2203186_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
KOfam	UHGV-2203186_2	K14059	52.6	0.0000000000000094	int; integrase	N/A
PHROG	UHGV-2203186_2	phrog_1	44.2	0.0000000000029	integrase	integration and excision
eggNOG-mapper	UHGV-2203186_2	428125.CLOLEP_02743	130.0	1.44e-33	Belongs to the 'phage' integrase family	N/A
COG	UHGV-2203186_2	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
UniRef90	UHGV-2203186_3	UniRef90_A0A374DTF3	103.0	4.07e-25	N/A	N/A
PHROG	UHGV-2203186_4	phrog_1914	127.2	8.5e-38	N/A	unknown function
UniRef90	UHGV-2203186_4	UniRef90_A0A2N0ULV1	389.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-2203186_4	1160721.RBI_I01604	144.0	6.17006e-41	N/A	N/A
Pfam	UHGV-2203186_4	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-2203186_4	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-2203186_4	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-2203186_5	K22299	52.6	0.0000000000000073	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-2203186_5	phrog_8	67.2	3.2e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-2203186_5	UniRef90_A0A2N0ULR3	460.0	0	HTH-type transcriptional regulator ImmR	N/A
eggNOG-mapper	UHGV-2203186_5	649747.HMPREF0083_01078	72.0	0.000000000000253	Transcriptional regulator	N/A
Pfam	UHGV-2203186_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2203186_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
PHROG	UHGV-2203186_6	phrog_8	60.5	4.2e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-2203186_6	UniRef90_A0A2N0ULV0	158.0	0	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-2203186_6	445335.CBN_3090	56.6	0.00000000418	Helix-turn-helix domain	N/A
Pfam	UHGV-2203186_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2203186_6	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
UniRef90	UHGV-2203186_8	UniRef90_A0A2N0ULT9	136.0	5.99994e-41	DNA binding domain, excisionase family	N/A
eggNOG-mapper	UHGV-2203186_8	1283300.ATXB01000001_gene1737	45.8	0.0000097	DNA excision	N/A
Pfam	UHGV-2203186_8	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-2203186_8	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-2203186_8	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-2203186_8	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2203186_10	1235793.C809_00533	52.8	0.000000171	N/A	N/A
KOfam	UHGV-2203186_11	K03546	55.9	3.8e-16	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-2203186_11	phrog_1499	478.3	0	N/A	unknown function
UniRef90	UHGV-2203186_11	UniRef90_A0A2N0UXU2	745.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-2203186_11	645991.Sgly_0320	504.0	0	domain protein	N/A
Pfam	UHGV-2203186_11	PF02463	N/A	N/A	RecF/RecN/SMC N terminal domain	SMC_N
COG	UHGV-2203186_11	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-2203186_11	TIGR03185,COG5293	N/A	N/A	N/A	N/A
PHROG	UHGV-2203186_13	phrog_124	265.9	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2203186_13	UniRef90_A0A2N0UXR5	696.0	0	Phage nucleotide-binding protein	N/A
eggNOG-mapper	UHGV-2203186_13	1123304.AQYA01000037_gene196	433.0	0	AAA domain	N/A
Pfam	UHGV-2203186_13	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-2203186_13	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-2203186_14	phrog_2698	176.9	0	N/A	unknown function
UniRef90	UHGV-2203186_14	UniRef90_UPI000F54335B	202.0	0	N/A	N/A
eggNOG-mapper	UHGV-2203186_14	742723.HMPREF9477_00927	139.0	7.44e-40	N/A	N/A
structural_annotation	UHGV-2203186_14	PF17426,NF005674	N/A	N/A	N/A	N/A
KOfam	UHGV-2203186_15	K17677	361.6	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-2203186_15	phrog_16	294.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2203186_15	UniRef90_A0A412ULZ3	1048.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-2203186_15	1235798.C817_03499	843.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-2203186_15	mREase_IV_00005	135.2	6.10001e-40	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-2203186_15	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-2203186_15	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-2203186_15	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-2203186_15	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-2203186_16	K07505	404.0	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-2203186_16	phrog_2597	1175.8	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2203186_16	UniRef90_A0A2N0UXP7	1455.0	0	Regulatory protein RepA	N/A
eggNOG-mapper	UHGV-2203186_16	394503.Ccel_3304	963.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-2203186_16	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-2203186_16	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-2203186_16	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-2203186_16	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
PHROG	UHGV-2203186_17	phrog_140	90.3	2.5e-26	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2203186_17	UniRef90_A0A2N0UXU6	261.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-2203186_17	411462.DORLON_00806	207.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-2203186_17	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-2203186_17	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-2203186_17	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2203186_18	PF02559,MF_00667,TIGR02861	N/A	N/A	N/A	N/A
PHROG	UHGV-2203186_21	phrog_10714	45.3	0.0000000000014	N/A	unknown function
eggNOG-mapper	UHGV-2203186_21	742723.HMPREF9477_00922	72.8	8.66e-16	N/A	N/A
KOfam	UHGV-2203186_22	K18830	51.0	0.000000000000037	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-2203186_22	phrog_8	62.9	7.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-2203186_22	UniRef90_A0A374N9T4	121.0	6.68e-35	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2203186_22	717605.Theco_0106	76.3	7.31e-17	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-2203186_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2203186_22	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-2203186_22	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-2203186_25	phrog_36	80.7	2.2e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-2203186_25	UniRef90_A0A2N0UXQ6	264.0	0	N/A	N/A
eggNOG-mapper	UHGV-2203186_25	1401067.HMPREF0872_06835	97.1	6.45e-24	N/A	N/A
Pfam	UHGV-2203186_25	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-2203186_25	PF07374,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-2203186_26	K06909	398.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2203186_26	phrog_3717	146.1	7.00649e-45	terminase large subunit	head and packaging
UniRef90	UHGV-2203186_26	UniRef90_A0A2N0ULW5	1033.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-2203186_26	411461.DORFOR_01162	619.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-2203186_26	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-2203186_26	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-2203186_26	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2203186_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2203186_26	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2203186_27	phrog_533	320.9	0	portal protein	head and packaging
UniRef90	UHGV-2203186_27	UniRef90_A0A2N0ULU9	822.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-2203186_27	1304866.K413DRAFT_3035	469.0	0	N/A	N/A
structural_annotation	UHGV-2203186_27	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-2203186_28	phrog_581	318.5	0	minor head protein	head and packaging
UniRef90	UHGV-2203186_28	UniRef90_A0A2N0ULU5	804.0	0	Putative ADP-ribosyltransferase Certhrax	N/A
eggNOG-mapper	UHGV-2203186_28	411470.RUMGNA_02213	374.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-2203186_28	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2203186_28	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2203186_28	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-2203186_29	phrog_20195	90.4	1.1e-26	N/A	unknown function
PHROG	UHGV-2203186_30	phrog_2616	43.1	0.0000000000093	N/A	unknown function
structural_annotation	UHGV-2203186_30	PF01281	N/A	N/A	N/A	N/A
PHROG	UHGV-2203186_31	phrog_194	102.5	5.3e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-2203186_31	UniRef90_A0A2N0ULW9	337.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-2203186_31	742765.HMPREF9457_02126	179.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-2203186_31	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-2203186_31	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-2203186_32	phrog_422	235.1	0	major head protein	head and packaging
eggNOG-mapper	UHGV-2203186_32	693746.OBV_18090	392.0	0	N/A	N/A
structural_annotation	UHGV-2203186_32	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-2203186_33	phrog_541	80.8	1.5e-23	head-tail adaptor	connector
UniRef90	UHGV-2203186_33	UniRef90_A0A371AQT0	110.0	9.64e-29	N/A	N/A
eggNOG-mapper	UHGV-2203186_33	1449050.JNLE01000003_gene3888	82.8	8.49e-19	N/A	N/A
PHROG	UHGV-2203186_34	phrog_3366	73.6	2.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-2203186_34	1449050.JNLE01000003_gene3887	89.0	6.3e-21	N/A	N/A
Pfam	UHGV-2203186_34	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-2203186_34	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-2203186_35	phrog_556	121.8	1.8e-36	minor head protein	head and packaging
UniRef90	UHGV-2203186_35	UniRef90_UPI00189BC4F9	177.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-2203186_35	1449050.JNLE01000003_gene3886	173.0	0	N/A	N/A
Pfam	UHGV-2203186_35	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-2203186_35	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-2203186_36	phrog_3266	104.4	7.6e-31	tail completion	connector
eggNOG-mapper	UHGV-2203186_36	1449050.JNLE01000003_gene3885	145.0	1.32002e-42	N/A	N/A
structural_annotation	UHGV-2203186_36	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-2203186_37	phrog_3099	147.3	6.72623e-44	N/A	unknown function
eggNOG-mapper	UHGV-2203186_37	1160721.RBI_II00532	230.0	0	N/A	N/A
structural_annotation	UHGV-2203186_37	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2203186_38	phrog_11299	138.7	2.89999e-41	N/A	unknown function
eggNOG-mapper	UHGV-2203186_38	1449050.JNLE01000003_gene3883	98.2	3.05e-24	N/A	N/A
structural_annotation	UHGV-2203186_38	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-2203186_39	phrog_706	137.9	6.40001e-41	N/A	unknown function
UniRef90	UHGV-2203186_39	UniRef90_A0A2N0ULW2	369.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-2203186_39	1160721.RBI_II00530	211.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2203186_39	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2203186_39	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2203186_41	phrog_1535	464.0	0	tail length tape measure protein	tail
UniRef90	UHGV-2203186_41	UniRef90_A0A2N0ULX3	1488.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-2203186_41	33035.JPJF01000093_gene2243	348.0	0	phage tail tape measure protein	N/A
COG	UHGV-2203186_41	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-2203186_41	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-2203186_42	phrog_1194	61.0	1.8e-17	N/A	unknown function
eggNOG-mapper	UHGV-2203186_42	397290.C810_05238	93.6	1.45e-22	N/A	N/A
Pfam	UHGV-2203186_42	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-2203186_42	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2203186_43	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
UniRef90	UHGV-2203186_44	UniRef90_A0A1C6HHE5	260.0	0	BppU_N domain-containing protein	N/A
structural_annotation	UHGV-2203186_44	PF10651,PF15432,PF08931,TIGR03711	N/A	N/A	N/A	N/A
PHROG	UHGV-2203186_46	phrog_1863	71.5	1e-21	N/A	unknown function
UniRef90	UHGV-2203186_46	UniRef90_UPI001F223E8B	90.9	2.7e-22	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-2203186_46	1203606.HMPREF1526_02027	81.6	1.99e-19	N/A	N/A
PHROG	UHGV-2203186_47	phrog_443	62.6	1.1e-17	holin	lysis
UniRef90	UHGV-2203186_47	UniRef90_R6MWB0	90.1	2.22e-22	Conserved domain protein	N/A
eggNOG-mapper	UHGV-2203186_47	1235797.C816_04172	83.6	1.38e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-2203186_47	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-2203186_47	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-2203186_48	phrog_18591	129.9	1.2e-38	N/A	unknown function
eggNOG-mapper	UHGV-2203186_48	1230343.CANP01000040_gene3044	176.0	0	N/A	N/A
KOfam	UHGV-2203186_49	K01448	56.9	3.5e-16	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2203186_49	phrog_1794	85.3	1e-24	amidase	lysis
UniRef90	UHGV-2203186_49	UniRef90_A0A373KFY8	429.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-2203186_49	1226322.HMPREF1545_03576	88.6	2.01e-17	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-2203186_49	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-2203186_49	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-2203186_49	PF01520,PF18342,NF038140,COG0860,COG4991	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2203186_50	500633.CLOHIR_00330	199.0	0	N/A	N/A
structural_annotation	UHGV-2203186_50	PF04381,MF_00194,NF001461,COG2974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2203186_52	500633.CLOHIR_00328	103.0	5.64e-26	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2203186	Yes	37,075	41	80	1
UHGV-1998852	No	39,629	41	86	1
UHGV-0221632	No	35,229	42	76	1
UHGV-0209409	No	35,145	42	76	1
UHGV-1485597	No	35,145	42	76	1
UHGV-2020850	No	20,905	41	49	1