vOTU vOTU-041545

vOTU: vOTU-041545

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-041545
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp900314705
Taxonomy (UHGV)	vFAM-00001 → vSUBFAM-00011 → vOTU-041545
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp900314705
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0074506
Biosample ID	SAMEA2737743
Genome length (bp)	32,705 bps
CheckV completeness	67.46% (Medium-quality)
CDS count	41
CDS density	92.00%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp900314705	Total connections	5	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp900314705	Total connections	52	Host agreement	78.85

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 67.46)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0074506_1	UniRef90_A0A7W8HDB0	46.2	0.00000705	Diketogulonate reductase-like aldo/keto reductase	N/A
eggNOG-mapper	UHGV-0074506_1	1504823.CCMM01000012_gene1761	66.2	0.00000000000117	Aldo/keto reductase family	N/A
COG	UHGV-0074506_1	COG0656	N/A	N/A	Aldo/keto reductase, related to diketogulonate reductase	N/A
UniRef90	UHGV-0074506_2	UniRef90_UPI001D0AEAB5	225.0	0	flavodoxin family protein	N/A
eggNOG-mapper	UHGV-0074506_2	478749.BRYFOR_09879	173.0	0	PFAM NADPH-dependent FMN reductase	N/A
COG	UHGV-0074506_2	COG0655	N/A	N/A	Multimeric flavodoxin WrbA, includes NAD(P)H:quinone oxidoreductase	N/A
KOfam	UHGV-0074506_3	K06221	222.5	0	dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]	N/A
PHROG	UHGV-0074506_3	phrog_8735	148.8	1.68156e-44	N/A	unknown function
UniRef90	UHGV-0074506_3	UniRef90_A0A0J8YYZ0	348.0	0	Organophosphate reductase	N/A
eggNOG-mapper	UHGV-0074506_3	1504823.CCMM01000012_gene1762	347.0	0	Aldo/keto reductase family	N/A
Pfam	UHGV-0074506_3	PF00248	N/A	N/A	Aldo/keto reductase family	Aldo_ket_red
COG	UHGV-0074506_3	COG0656	N/A	N/A	Aldo/keto reductase, related to diketogulonate reductase	N/A
PHROG	UHGV-0074506_4	phrog_83	74.4	1.7e-21	terminase small subunit	head and packaging
UniRef90	UHGV-0074506_4	UniRef90_A0A354HKS8	364.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0074506_4	411490.ANACAC_00748	307.0	0	N/A	N/A
structural_annotation	UHGV-0074506_4	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0074506_5	411468.CLOSCI_00218	47.4	0.00000132	N/A	N/A
AcrCatalog	UHGV-0074506_5	cluster_9768	33.5	0.0000124	NA	N/A
KOfam	UHGV-0074506_6	K07319	133.8	1.7e-39	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0074506_6	phrog_498	522.2	0	DNA methyltransferase	other
UniRef90	UHGV-0074506_6	UniRef90_A0A354HKS9	838.0	0	DNA modification methylase	N/A
eggNOG-mapper	UHGV-0074506_6	641112.ACOK01000108_gene1785	711.0	0	N/A	N/A
PADLOC	UHGV-0074506_6	MTase_II_00015	523.7	0	Type II methyltransferase	RM
Pfam	UHGV-0074506_6	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0074506_6	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0074506_6	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0074506_6	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0074506_7	phrog_3782	114.9	1.3e-34	N/A	unknown function
UniRef90	UHGV-0074506_7	UniRef90_A0A348ZBT6	142.0	1.70958e-42	N/A	N/A
eggNOG-mapper	UHGV-0074506_7	573061.Clocel_3983	109.0	1.34e-29	N/A	N/A
Pfam	UHGV-0074506_7	PF14192	N/A	N/A	N/A	DUF4314
COG	UHGV-0074506_7	COG2105	N/A	N/A	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	N/A
PHROG	UHGV-0074506_8	phrog_2443	310.3	0	amidoligase enzyme	other
UniRef90	UHGV-0074506_8	UniRef90_A0A348ZBT7	629.0	0	Alpha-L-fucosidase	N/A
eggNOG-mapper	UHGV-0074506_8	573061.Clocel_3982	510.0	0	amidoligase enzyme	N/A
AcrCatalog	UHGV-0074506_8	cluster_58247	94.7	3.05e-24	NA	N/A
Pfam	UHGV-0074506_8	PF12224	N/A	N/A	Putative amidoligase enzyme	Amidoligase_2
structural_annotation	UHGV-0074506_8	PF12224	N/A	N/A	N/A	N/A
KOfam	UHGV-0074506_9	K00682	101.9	6.9e-30	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	N/A
PHROG	UHGV-0074506_9	phrog_2520	151.1	4.2039e-45	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0074506_9	UniRef90_A0A348ZBT8	313.0	0	Gamma-glutamylcyclotransferase	N/A
eggNOG-mapper	UHGV-0074506_9	665956.HMPREF1032_02272	254.0	0	Gamma-glutamyl cyclotransferase, AIG2-like	N/A
Pfam	UHGV-0074506_9	PF06094	N/A	N/A	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
COG	UHGV-0074506_9	COG2105	N/A	N/A	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	N/A
structural_annotation	UHGV-0074506_9	PF06094,COG2105	N/A	N/A	N/A	N/A
PHROG	UHGV-0074506_10	phrog_2945	77.4	1.2e-22	N/A	unknown function
UniRef90	UHGV-0074506_10	UniRef90_W7US45	83.6	7.58e-20	Hydrogenase maturation protein HypF	N/A
eggNOG-mapper	UHGV-0074506_10	1235799.C818_01022	87.8	2.6e-22	N/A	N/A
eggNOG-mapper	UHGV-0074506_11	411489.CLOL250_01312	342.0	0	N/A	N/A
PHROG	UHGV-0074506_12	phrog_9	481.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0074506_12	UniRef90_A0A348ZBU0	1080.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0074506_12	1121334.KB911068_gene2288	970.0	0	large subunit	N/A
Pfam	UHGV-0074506_12	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0074506_12	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0074506_12	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0074506_12	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
KOfam	UHGV-0074506_14	K19092	52.2	0.000000000000017	parE1_3_4; toxin ParE1/3/4	N/A
PHROG	UHGV-0074506_14	phrog_2455	94.4	8.2e-28	N/A	unknown function
UniRef90	UHGV-0074506_14	UniRef90_A0A348ZBU2	214.0	0	Type II toxin-antitoxin system RelE/ParE family toxin	N/A
eggNOG-mapper	UHGV-0074506_14	908340.HMPREF9406_0164	152.0	0	ParE toxin of type II toxin-antitoxin system, parDE	N/A
Pfam	UHGV-0074506_14	PF05016	N/A	N/A	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
NCBIFam	UHGV-0074506_14	TIGR02385.1	N/A	N/A	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	N/A
COG	UHGV-0074506_14	COG3668	N/A	N/A	Plasmid stabilization system protein ParE	N/A
structural_annotation	UHGV-0074506_14	PF05016,TIGR00053,COG3668	N/A	N/A	N/A	N/A
KOfam	UHGV-0074506_15	K07473	71.4	2e-20	dinJ; DNA-damage-inducible protein J	N/A
PHROG	UHGV-0074506_15	phrog_2737	98.1	4.2e-29	N/A	unknown function
UniRef90	UHGV-0074506_15	UniRef90_A0A348ZBU3	188.0	0	Type II toxin-antitoxin system antitoxin, RelB/DinJ family	N/A
eggNOG-mapper	UHGV-0074506_15	411468.CLOSCI_03384	163.0	0	RelB antitoxin	N/A
Pfam	UHGV-0074506_15	PF04221	N/A	N/A	RelB antitoxin	RelB
NCBIFam	UHGV-0074506_15	TIGR02384.1	N/A	N/A	type II toxin-antitoxin system RelB/DinJ family antitoxin	N/A
COG	UHGV-0074506_15	COG3077	N/A	N/A	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	N/A
structural_annotation	UHGV-0074506_15	PF04221,TIGR02384,COG3077	N/A	N/A	N/A	N/A
PHROG	UHGV-0074506_16	phrog_12	304.1	0	portal protein	head and packaging
UniRef90	UHGV-0074506_16	UniRef90_A0A354HKT8	598.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0074506_16	1235802.C823_05278	517.0	0	Phage portal protein	N/A
Pfam	UHGV-0074506_16	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0074506_16	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0074506_16	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0074506_16	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0074506_17	869209.Tresu_0674	1057.0	0	N/A	N/A
structural_annotation	UHGV-0074506_17	PF02384,MF_01872,TIGR02987,COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-0074506_18	phrog_78	49.1	0.00000000000012	tail terminator	connector
eggNOG-mapper	UHGV-0074506_18	1216932.CM240_0622	132.0	1.44e-38	High confidence in function and specificity	N/A
PHROG	UHGV-0074506_19	phrog_88	181.2	0	major tail protein	tail
UniRef90	UHGV-0074506_19	UniRef90_A0A348ZBV1	385.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0074506_19	1216932.CM240_0623	305.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0074506_19	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0074506_19	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0074506_19	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0074506_20	phrog_2115	79.1	5.7e-23	tail protein	tail
eggNOG-mapper	UHGV-0074506_20	1216932.CM240_0624	176.0	0	N/A	N/A
structural_annotation	UHGV-0074506_20	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0074506_21	phrog_10988	49.5	0.000000000000067	N/A	unknown function
eggNOG-mapper	UHGV-0074506_21	573061.Clocel_3968	73.6	2.62e-17	N/A	N/A
eggNOG-mapper	UHGV-0074506_22	1208321.D104_18110	58.9	0.0000000678	N/A	N/A
PHROG	UHGV-0074506_23	phrog_58	192.3	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0074506_23	333138.LQ50_04250	367.0	0	Phage tail tape measure protein	N/A
COG	UHGV-0074506_23	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0074506_23	PF20155,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0074506_24	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0074506_25	phrog_1067	171.0	0	minor head protein	head and packaging
UniRef90	UHGV-0074506_25	UniRef90_A0A348ZBV6	740.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0074506_25	1160721.RBI_I01574	143.0	1.11e-34	Prophage endopeptidase tail	N/A
Pfam	UHGV-0074506_25	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0074506_25	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0074506_25	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0074506_25	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0074506_28	phrog_21233	108.1	3.6e-32	N/A	unknown function
UniRef90	UHGV-0074506_28	UniRef90_A0A348ZBW0	265.0	0	Holin	N/A
eggNOG-mapper	UHGV-0074506_28	908340.HMPREF9406_0179	204.0	0	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0074506_28	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0074506_28	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0074506_28	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0074506_28	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0074506_29	K01447	51.1	0.000000000000027	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0074506_29	phrog_20388	282.6	0	endolysin	lysis
UniRef90	UHGV-0074506_29	UniRef90_A0A348ZBW1	465.0	0	Cpl-7 domain-containing protein	N/A
eggNOG-mapper	UHGV-0074506_29	411490.ANACAC_00721	333.0	0	Cpl-7 lysozyme C-terminal domain protein	N/A
Pfam	UHGV-0074506_29	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0074506_29	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0074506_29	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0074506_29	PF08230,PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0074506_30	phrog_7234	92.7	1.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-0074506_30	1230342.CTM_16852	87.0	5.67e-22	N/A	N/A
PHROG	UHGV-0074506_31	phrog_408	100.8	1.1e-29	N/A	unknown function
UniRef90	UHGV-0074506_31	UniRef90_R5WJD8	196.0	0	rRNA biogenesis protein rrp5 putative	N/A
eggNOG-mapper	UHGV-0074506_31	698758.AXY_13970	95.5	5.09e-24	N/A	N/A
PHROG	UHGV-0074506_32	phrog_69	361.7	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0074506_32	UniRef90_A0A2T0GF39	718.0	0	N/A	N/A
eggNOG-mapper	UHGV-0074506_32	1035184.HMPREF1042_1370	604.0	0	N/A	N/A
Pfam	UHGV-0074506_32	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0074506_32	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0074506_32	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0074506_33	phrog_112	220.0	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0074506_33	UniRef90_R5VQ47	365.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0074506_33	1118055.CAGU01000013_gene802	320.0	0	N/A	N/A
Pfam	UHGV-0074506_33	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0074506_33	PF10991,MF_04153	N/A	N/A	N/A	N/A
KOfam	UHGV-0074506_34	K02334	941.8	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0074506_34	phrog_17	437.6	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0074506_34	UniRef90_R5VPA7	1246.0	0	POLAc domain-containing protein	N/A
eggNOG-mapper	UHGV-0074506_34	1118055.CAGU01000013_gene800	1017.0	0	DNA-directed DNA polymerase	N/A
Pfam	UHGV-0074506_34	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0074506_34	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0074506_34	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0074506_35	phrog_2996	69.3	4.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-0074506_35	1487921.DP68_11400	81.6	1.07e-19	N/A	N/A
Pfam	UHGV-0074506_35	PF20612	N/A	N/A	SHOCT domain	SHOCT_2
structural_annotation	UHGV-0074506_35	PF20612	N/A	N/A	N/A	N/A
KOfam	UHGV-0074506_36	K06400	387.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0074506_36	phrog_95	467.3	0	integrase	integration and excision
UniRef90	UHGV-0074506_36	UniRef90_A0A1M5R994	993.0	0	Site-specific DNA recombinase	N/A
eggNOG-mapper	UHGV-0074506_36	1216932.CM240_0633	598.0	0	resolvase	N/A
Pfam	UHGV-0074506_36	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0074506_36	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0074506_36	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0074506_36	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0074506_36	PF00239,PF07508,PF18822,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0074506_37	phrog_7701	161.7	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0074506_37	UniRef90_A0A3E3E6A9	266.0	0	Recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0074506_37	938289.CAJN020000007_gene429	131.0	1.47e-37	Recombinase	N/A
structural_annotation	UHGV-0074506_37	PF07508	N/A	N/A	N/A	N/A
KOfam	UHGV-0074506_38	K06400	386.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0074506_38	phrog_95	464.1	0	integrase	integration and excision
UniRef90	UHGV-0074506_38	UniRef90_R5VXP3	923.0	0	Resolvase N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0074506_38	1216932.CM240_0635	674.0	0	resolvase	N/A
Pfam	UHGV-0074506_38	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0074506_38	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0074506_38	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0074506_38	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0074506_38	PF00239,PF07508,PF18822,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0074506_39	UniRef90_R5XDZ1	140.0	3.36031e-42	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0074506_39	471875.RUMLAC_01578	139.0	2.29953e-42	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0074506_39	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0074506_39	PF20075,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0074506_40	471875.RUMLAC_01577	434.0	0	N/A	N/A
UniRef90	UHGV-0074506_41	UniRef90_A0A200I2I6	58.9	0.0000000000577	GIY-YIG domain-containing protein	N/A
eggNOG-mapper	UHGV-0074506_41	471875.RUMLAC_01576	68.2	0.000000000000203	regulation of methylation-dependent chromatin silencing	N/A
COG	UHGV-0074506_41	COG3680	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0074506	Yes	32,705	36	67	1
UHGV-2033692	No	22,074	34	40	1