vOTU vOTU-041604

vOTU: vOTU-041604

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-041604
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_C
Taxonomy (UHGV)	vFAM-00060 → vSUBFAM-02806 → vGENUS-09254 → vOTU-041604
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_C
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2045787
Biosample ID	SAMEA2737681
Genome length (bp)	30,170 bps
CheckV completeness	89.14% (Medium-quality)
CDS count	48
CDS density	92.67%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_C	Total connections	68	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_C	Total connections	252	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 89.14)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
COG	UHGV-2045787_1	COG1943	N/A	N/A	REP element-mobilizing transposase RayT	N/A
KOfam	UHGV-2045787_2	K07273	184.4	0	acm; lysozyme	N/A
PHROG	UHGV-2045787_2	phrog_291	138.1	5.79997e-41	endolysin	lysis
UniRef90	UHGV-2045787_2	UniRef90_U2K8D9	635.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-2045787_2	411473.RUMCAL_01945	635.0	0	hydrolase, family 25	N/A
Pfam	UHGV-2045787_2	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
Pfam	UHGV-2045787_2	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-2045787_2	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-2045787_2	PF01183,PF08291,NF007557,COG3757,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-2045787_3	phrog_1129	68.2	8.8e-20	holin	lysis
UniRef90	UHGV-2045787_3	UniRef90_A0A416MDZ9	122.0	1.84e-34	Enolase	N/A
eggNOG-mapper	UHGV-2045787_3	411473.RUMCAL_01944	167.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-2045787_3	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-2045787_3	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-2045787_5	phrog_35590	366.8	0	N/A	unknown function
eggNOG-mapper	UHGV-2045787_5	411473.RUMCAL_00613	108.0	8.21e-25	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-2045787_5	COG2931	N/A	N/A	Ca2+-binding protein, RTX toxin-related	N/A
structural_annotation	UHGV-2045787_5	PF07675,NF038128	N/A	N/A	N/A	N/A
KOfam	UHGV-2045787_6	K16628	79.1	1.6e-23	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-2045787_6	phrog_25888	516.9	0	N/A	unknown function
UniRef90	UHGV-2045787_6	UniRef90_U2KR58	621.0	0	Collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-2045787_6	411473.RUMCAL_01941	621.0	0	cell adhesion	N/A
Pfam	UHGV-2045787_6	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-2045787_6	COG3468	N/A	N/A	Autotransporter adhesin AidA	N/A
structural_annotation	UHGV-2045787_6	PF10651	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2045787_7	PF14594,TIGR03361,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-2045787_9	phrog_1272	353.7	0	tail length tape measure protein	tail
UniRef90	UHGV-2045787_9	UniRef90_R7FII5	933.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-2045787_9	411473.RUMCAL_01938	935.0	0	tail tape measure protein, TP901	N/A
Pfam	UHGV-2045787_9	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-2045787_9	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-2045787_9	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-2045787_10	phrog_706	163.7	0	N/A	unknown function
UniRef90	UHGV-2045787_10	UniRef90_B0G3B6	146.0	2.94006e-41	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-2045787_10	411473.RUMCAL_01937	355.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2045787_10	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2045787_10	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2045787_11	phrog_4450	102.5	3.6e-30	N/A	unknown function
UniRef90	UHGV-2045787_11	UniRef90_A0A355D9Y6	54.7	0.000000367	AP endonuclease	N/A
eggNOG-mapper	UHGV-2045787_11	641112.ACOK01000073_gene2902	92.0	2.74e-22	N/A	N/A
Pfam	UHGV-2045787_11	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-2045787_11	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-2045787_12	phrog_3099	189.1	0	N/A	unknown function
eggNOG-mapper	UHGV-2045787_12	411473.RUMCAL_01935	481.0	0	N/A	N/A
structural_annotation	UHGV-2045787_12	PF08813,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2045787_13	phrog_3266	168.5	0	tail completion	connector
UniRef90	UHGV-2045787_13	UniRef90_A0A355UZ60	169.0	0	Chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-2045787_13	411473.RUMCAL_01934	303.0	0	N/A	N/A
structural_annotation	UHGV-2045787_13	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-2045787_14	phrog_556	92.1	4.5e-27	minor head protein	head and packaging
UniRef90	UHGV-2045787_14	UniRef90_UPI00016BD3C0	75.1	0.00000000000000322	minor capsid protein	N/A
eggNOG-mapper	UHGV-2045787_14	1151292.QEW_4532	75.1	6.45e-16	Minor capsid protein	N/A
Pfam	UHGV-2045787_14	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-2045787_14	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-2045787_15	phrog_3366	61.0	1.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-2045787_15	411473.RUMCAL_01932	225.0	0	N/A	N/A
structural_annotation	UHGV-2045787_15	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2045787_16	phrog_541	99.7	2.1e-29	head-tail adaptor	connector
eggNOG-mapper	UHGV-2045787_16	641112.ACOK01000073_gene2896	103.0	1.65e-26	N/A	N/A
PHROG	UHGV-2045787_17	phrog_267	92.0	7.1e-27	major head protein	head and packaging
UniRef90	UHGV-2045787_17	UniRef90_A0A4P8IA69	365.0	0	Phage capsid and scaffold	N/A
eggNOG-mapper	UHGV-2045787_17	411473.RUMCAL_01930	535.0	0	N/A	N/A
structural_annotation	UHGV-2045787_17	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2045787_18	phrog_194	58.5	1.6e-16	head scaffolding protein	head and packaging
UniRef90	UHGV-2045787_18	UniRef90_R7FEY9	327.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-2045787_18	411473.RUMCAL_01929	327.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-2045787_18	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-2045787_18	PF06810,MF_02110	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2045787_20	PF12305	N/A	N/A	N/A	N/A
PHROG	UHGV-2045787_21	phrog_581	316.1	0	minor head protein	head and packaging
UniRef90	UHGV-2045787_21	UniRef90_U2K8C2	734.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-2045787_21	411473.RUMCAL_01925	734.0	0	N/A	N/A
Pfam	UHGV-2045787_21	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2045787_21	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2045787_21	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-2045787_22	phrog_533	334.0	0	portal protein	head and packaging
UniRef90	UHGV-2045787_22	UniRef90_U2KRP5	853.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-2045787_22	411473.RUMCAL_01924	853.0	0	N/A	N/A
structural_annotation	UHGV-2045787_22	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-2045787_23	K06909	140.5	1.49995e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2045787_23	phrog_10250	158.3	0	N/A	unknown function
UniRef90	UHGV-2045787_23	UniRef90_U2LZ34	867.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-2045787_23	411473.RUMCAL_01923	867.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-2045787_23	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-2045787_23	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2045787_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2045787_23	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-2045787_24	UniRef90_W0U9H3	56.2	0.000000167	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-2045787_24	411473.RUMCAL_01921	215.0	0	N/A	N/A
KOfam	UHGV-2045787_25	K05785	52.1	0.00000000000001	rfaH; transcriptional antiterminator RfaH	N/A
PHROG	UHGV-2045787_25	phrog_6386	125.7	2.9e-37	transcription antiterminator	transcription regulation
UniRef90	UHGV-2045787_25	UniRef90_U2K8B7	330.0	0	Transcription termination/antitermination factor NusG	N/A
eggNOG-mapper	UHGV-2045787_25	411473.RUMCAL_01920	330.0	0	Transcription termination factor nusG	N/A
Pfam	UHGV-2045787_25	PF02357	N/A	N/A	Transcription termination factor nusG	NusG
COG	UHGV-2045787_25	COG0250	N/A	N/A	Transcription termination/antitermination protein NusG	N/A
structural_annotation	UHGV-2045787_25	PF02357,MF_00951,NF033641,COG0250	N/A	N/A	N/A	N/A
PHROG	UHGV-2045787_26	phrog_426	105.4	7.4e-31	terminase small subunit	head and packaging
UniRef90	UHGV-2045787_26	UniRef90_UPI001D05DC57	174.0	0	N/A	N/A
eggNOG-mapper	UHGV-2045787_26	411473.RUMCAL_01919	347.0	0	N/A	N/A
Pfam	UHGV-2045787_26	PF11985	N/A	N/A	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
structural_annotation	UHGV-2045787_26	PF11985	N/A	N/A	N/A	N/A
PHROG	UHGV-2045787_27	phrog_25462	184.7	0	N/A	unknown function
UniRef90	UHGV-2045787_27	UniRef90_A0A3C0QMV8	140.0	3.96007e-41	Type VI secretion protein	N/A
eggNOG-mapper	UHGV-2045787_27	411473.RUMCAL_01918	203.0	0	N/A	N/A
structural_annotation	UHGV-2045787_27	PF01638,MF_01819,NF002926,COG1733	N/A	N/A	N/A	N/A
PHROG	UHGV-2045787_28	phrog_462	63.2	2.5e-18	lipoprotein	other
eggNOG-mapper	UHGV-2045787_28	411473.RUMCAL_01917	193.0	0	N/A	N/A
PHROG	UHGV-2045787_29	phrog_532	70.7	2.4e-20	late transcriptional activator	transcription regulation
UniRef90	UHGV-2045787_29	UniRef90_U2KR36	187.0	0	Mor transcription activator family protein	N/A
eggNOG-mapper	UHGV-2045787_29	411473.RUMCAL_01916	187.0	0	Mor transcription activator	N/A
Pfam	UHGV-2045787_29	PF08765	N/A	N/A	Mor transcription activator family	Mor
COG	UHGV-2045787_29	COG5566	N/A	N/A	Transcriptional regulator, middle operon regulator (Mor) family	N/A
structural_annotation	UHGV-2045787_29	PF08765,NF040785,COG5566	N/A	N/A	N/A	N/A
PHROG	UHGV-2045787_30	phrog_286	77.8	1.9e-22	N/A	unknown function
UniRef90	UHGV-2045787_30	UniRef90_A0A373KYV3	105.0	5.62e-26	N/A	N/A
eggNOG-mapper	UHGV-2045787_30	411473.RUMCAL_01915	292.0	0	N/A	N/A
Pfam	UHGV-2045787_30	PF06252	N/A	N/A	Bacteriophage Mu, GemA protein	GemA
structural_annotation	UHGV-2045787_30	PF06252	N/A	N/A	N/A	N/A
KOfam	UHGV-2045787_31	K02315	120.2	2.1e-35	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-2045787_31	phrog_50	133.9	1.3e-39	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2045787_31	UniRef90_U2KRN6	467.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-2045787_31	411473.RUMCAL_01914	467.0	0	N/A	N/A
Pfam	UHGV-2045787_31	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-2045787_31	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-2045787_31	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-2045787_32	phrog_270	80.2	4.2e-23	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2045787_32	UniRef90_UPI000FF705BB	68.6	0.00000000000447	phage replication protein	N/A
eggNOG-mapper	UHGV-2045787_32	411473.RUMCAL_01913	189.0	0	HNH endonuclease	N/A
COG	UHGV-2045787_32	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-2045787_33	phrog_5671	127.4	7.3e-38	N/A	unknown function
eggNOG-mapper	UHGV-2045787_33	411473.RUMCAL_01912	231.0	0	N/A	N/A
PHROG	UHGV-2045787_34	phrog_6244	86.0	5.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-2045787_34	1232453.BAIF02000002_gene1275	82.0	3.53e-19	YqaJ viral recombinase family	N/A
COG	UHGV-2045787_34	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
PHROG	UHGV-2045787_35	phrog_4292	90.1	1.1e-26	N/A	unknown function
UniRef90	UHGV-2045787_35	UniRef90_A0A7G3VS96	53.1	0.0000000397	Putative NHN endonuclease	N/A
eggNOG-mapper	UHGV-2045787_35	411473.RUMCAL_01910	116.0	7.18e-34	N/A	N/A
KOfam	UHGV-2045787_36	K07132	65.4	8.9e-19	MuB; ATP-dependent target DNA activator	N/A
PHROG	UHGV-2045787_36	phrog_296	138.0	8.5e-41	DNA transposition protein	integration and excision
UniRef90	UHGV-2045787_36	UniRef90_R7FFF2	578.0	0	AAA domain protein	N/A
eggNOG-mapper	UHGV-2045787_36	411473.RUMCAL_01909	578.0	0	AAA domain	N/A
Pfam	UHGV-2045787_36	PF13401	N/A	N/A	AAA domain	AAA_22
COG	UHGV-2045787_36	COG2842	N/A	N/A	Bacteriophage DNA transposition protein, AAA+ family ATPase	N/A
structural_annotation	UHGV-2045787_36	PF13401,MF_01407,TIGR03015,COG2842	N/A	N/A	N/A	N/A
PHROG	UHGV-2045787_37	phrog_310	368.4	0	transposase	integration and excision
UniRef90	UHGV-2045787_37	UniRef90_U2LZ18	1266.0	0	Integrase catalytic domain-containing protein	N/A
eggNOG-mapper	UHGV-2045787_37	411473.RUMCAL_01908	1266.0	0	Mu transposase, C-terminal	N/A
PADLOC	UHGV-2045787_37	TnsB_0_V-K	57.7	1.8e-16	TnsB_0_V-K	CRISPR-CAS
Pfam	UHGV-2045787_37	PF09039	N/A	N/A	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
Pfam	UHGV-2045787_37	PF00665	N/A	N/A	Integrase core domain	rve
Pfam	UHGV-2045787_37	PF09299	N/A	N/A	Mu transposase, C-terminal	Mu-transpos_C
COG	UHGV-2045787_37	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-2045787_37	PF02914,PF09039,PF09299,PF21531,NF033594,TIGR01764,COG3316,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-2045787_41	K23779	57.8	2.7e-16	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-2045787_41	phrog_3	47.7	0.00000000000068	transcriptional repressor	transcription regulation
UniRef90	UHGV-2045787_41	UniRef90_U2K8A4	142.0	7.67912e-43	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-2045787_41	246199.CUS_7260	47.8	0.00000844	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-2045787_41	retron_type_VI_hth_cluster2_1	51.7	0.000000000000025	N/A	Retron
Pfam	UHGV-2045787_41	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-2045787_41	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-2045787_48	UniRef90_R7FFE5	244.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2045787_48	1160721.RBI_II00559	92.8	2.44e-21	Peptidase S24-like	N/A
Pfam	UHGV-2045787_48	PF07022	N/A	N/A	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
COG	UHGV-2045787_48	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2045787_48	PF12844,NF007257,COG3655	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2045787	Yes	30,170	52	89	1
UHGV-0114206	No	28,970	53	82	1