vOTU vOTU-041629

vOTU: vOTU-041629

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-041629
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Faecousia → Faecousia sp000434635
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00128 → vOTU-041629
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Faecousia
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2050507
Biosample ID	N/A
Genome length (bp)	22,826 bps
CheckV completeness	55.15% (Medium-quality)
CDS count	41
CDS density	90.41%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Faecousia	Total connections	64	Host agreement	75
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Faecousia → Faecousia sp000434635	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 55.15)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2050507_1	phrog_64	140.5	8.50028e-42	portal protein	head and packaging
UniRef90	UHGV-2050507_1	UniRef90_A0A856HZB4	415.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2050507_1	673376.F2VHW1_9CAUD	213.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-2050507_1	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-2050507_1	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-2050507_2	phrog_38	175.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-2050507_2	UniRef90_UPI00166CA12B	446.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-2050507_2	1140001.I571_01829	450.0	0	N/A	N/A
structural_annotation	UHGV-2050507_2	PF17289,PF05876,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A
KOfam	UHGV-2050507_4	K03497	53.0	0.0000000000000026	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-2050507_4	phrog_21498	292.5	0	N/A	unknown function
UniRef90	UHGV-2050507_4	UniRef90_A0A7X2P836	290.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-2050507_4	469378.Ccur_02830	283.0	0	DNA binding	N/A
PADLOC	UHGV-2050507_4	MTase_II_00015	93.4	3e-27	Type II methyltransferase	RM
Pfam	UHGV-2050507_4	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-2050507_4	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-2050507_4	PF02195,PF05869,MF_02015,TIGR00180,TIGR01712,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-2050507_5	phrog_36	61.5	1.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-2050507_5	UniRef90_UPI001D0837DD	171.0	0	N/A	N/A
eggNOG-mapper	UHGV-2050507_5	1121428.DESHY_10050___1	62.0	0.000000000825	N/A	N/A
structural_annotation	UHGV-2050507_5	PF07374,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-2050507_6	K00571	76.3	1.4e-22	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-2050507_6	phrog_23224	53.8	6.7e-26	DNA methyltransferase	other
UniRef90	UHGV-2050507_6	UniRef90_A0A0E2E9E3	250.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-2050507_6	1268240.ATFI01000007_gene431	182.0	0	DNA methylase	N/A
PADLOC	UHGV-2050507_6	MTase_II_00172	123.6	1.9e-36	Type II methyltransferase	RM
Pfam	UHGV-2050507_6	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-2050507_6	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-2050507_6	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-2050507_8	phrog_3136	137.8	3.30006e-41	N/A	unknown function
UniRef90	UHGV-2050507_8	UniRef90_A0A3D0HBD2	138.0	6.59e-38	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-2050507_8	97139.C824_00742	61.2	0.00000000287	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-2050507_8	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-2050507_8	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
UniRef90	UHGV-2050507_9	UniRef90_UPI001C8BFE2A	50.8	0.00000161	Lar family restriction alleviation protein	N/A
Pfam	UHGV-2050507_9	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-2050507_9	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-2050507_11	phrog_21034	40.0	0.000000000062	N/A	unknown function
eggNOG-mapper	UHGV-2050507_11	1221522.B723_18435	52.0	0.000000123	N/A	N/A
PHROG	UHGV-2050507_12	phrog_599	45.4	0.0000000000015	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2050507_12	UniRef90_R6QWY1	104.0	2.56e-27	28	N/A
Pfam	UHGV-2050507_12	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-2050507_12	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
KOfam	UHGV-2050507_13	K00558	40.6	2.6e-18	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-2050507_13	phrog_16427	68.3	9.1e-20	DNA methyltransferase	other
UniRef90	UHGV-2050507_13	UniRef90_A0A3D5I9W8	203.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-2050507_13	657322.FPR_26610	171.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
Pfam	UHGV-2050507_13	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-2050507_13	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-2050507_16	K02315	129.8	2.9e-38	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-2050507_16	phrog_50	120.3	2e-35	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2050507_16	UniRef90_A0A4Z0Y679	227.0	0	DNA replication protein DnaC	N/A
eggNOG-mapper	UHGV-2050507_16	445972.ANACOL_01829	205.0	0	N/A	N/A
Pfam	UHGV-2050507_16	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-2050507_16	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-2050507_16	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-2050507_17	phrog_15768	54.5	0.0000000000000024	N/A	unknown function
eggNOG-mapper	UHGV-2050507_17	679935.Alfi_0671	53.5	0.0000018	N/A	N/A
Pfam	UHGV-2050507_17	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-2050507_17	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-2050507_18	K01160	47.0	0.0000000000007	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-2050507_18	phrog_4632	60.7	1.6e-18	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2050507_18	UniRef90_A0A7X8IB41	149.0	4.76441e-44	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-2050507_18	469604.HMPREF0946_00819	58.2	0.00000000379	N/A	N/A
structural_annotation	UHGV-2050507_18	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-2050507_19	K03111	110.3	2.9e-32	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2050507_19	phrog_44	124.3	9.6e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2050507_19	UniRef90_A0A1E4LK76	121.0	1.84e-32	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2050507_19	1519439.JPJG01000082_gene432	120.0	1.24e-32	Single-strand binding protein family	N/A
Pfam	UHGV-2050507_19	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2050507_19	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2050507_19	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2050507_19	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2050507_19	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-2050507_20	UniRef90_UPI001D05CADB	115.0	2.05e-31	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2050507_20	1235800.C819_02254	66.2	0.00000000000203	HNH nucleases	N/A
Pfam	UHGV-2050507_20	PF13391	N/A	N/A	HNH endonuclease	HNH_2
PHROG	UHGV-2050507_21	phrog_72	48.8	0.000000000000047	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2050507_21	UniRef90_A0A2Z4Q9W9	142.0	6.01e-40	NinB	N/A
eggNOG-mapper	UHGV-2050507_21	445972.ANACOL_01825	158.0	0	N/A	N/A
structural_annotation	UHGV-2050507_21	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-2050507_22	phrog_434	60.8	2.4e-17	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2050507_22	UniRef90_B0PAM4	132.0	1.26e-35	YqaJ domain-containing protein	N/A
Pfam	UHGV-2050507_22	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
structural_annotation	UHGV-2050507_22	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
UniRef90	UHGV-2050507_23	UniRef90_A0A6N9QJT6	241.0	0	N/A	N/A
eggNOG-mapper	UHGV-2050507_23	33035.JPJF01000135_gene5082	172.0	0	N/A	N/A
Pfam	UHGV-2050507_23	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-2050507_23	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2050507_28	PF08962,PF07653,COG2388	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2050507_29	PF20432,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-2050507_33	UniRef90_UPI001C1045C3	99.8	3.55e-26	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2050507_33	1211817.CCAT010000053_gene2103	58.5	0.000000000149	Helix-turn-helix	N/A
Pfam	UHGV-2050507_33	PF05339	N/A	N/A	N/A	DUF739
structural_annotation	UHGV-2050507_33	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-2050507_34	phrog_8	50.5	0.000000000000048	transcriptional regulator	transcription regulation
UniRef90	UHGV-2050507_34	UniRef90_A0A3D3W9W9	96.3	4.07e-23	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2050507_34	658659.HMPREF0983_03304	84.0	3.62e-19	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2050507_34	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-2050507_34	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2050507_34	PF13560,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2050507_35	1410638.JHXJ01000015_gene2445	120.0	8.34e-28	N/A	N/A
COG	UHGV-2050507_36	COG1426	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2050507_36	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-2050507_37	K14059	149.8	3.36312e-44	int; integrase	N/A
PHROG	UHGV-2050507_37	phrog_1	144.0	1.19951e-42	integrase	integration and excision
UniRef90	UHGV-2050507_37	UniRef90_A0A3D2HVQ9	374.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-2050507_37	1121344.JHZO01000004_gene1696	94.7	1.7e-19	Phage integrase family	N/A
Pfam	UHGV-2050507_37	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2050507_37	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2050507_37	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2050507_39	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-2050507_40	phrog_20016	173.2	0	N/A	unknown function
UniRef90	UHGV-2050507_40	UniRef90_A0A345BPX4	160.0	0	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-2050507_40	1226322.HMPREF1545_00077	145.0	7.63708e-43	N/A	N/A
structural_annotation	UHGV-2050507_40	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-2050507_41	phrog_16490	78.2	1.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-2050507_41	1408437.JNJN01000043_gene803	87.8	2.22e-19	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2050507	Yes	22,826	51	55	1
UHGV-0069532	No	11,220	50	28	1
UHGV-1662900	No	11,220	50	28	1