vOTU vOTU-041636

vOTU: vOTU-041636

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-041636
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00146 → vGENUS-00309 → vOTU-041636
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0077458
Biosample ID	SAMEA2737830
Genome length (bp)	29,891 bps
CheckV completeness	84.63% (Medium-quality)
CDS count	45
CDS density	93.20%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis	Total connections	172	Host agreement	79.07
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis	Total connections	78	Host agreement	91.03

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 84.63)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0077458_1	K19117	49.9	0.000000000000044	csd1, cas8c; CRISPR-associated protein Csd1	N/A
UniRef90	UHGV-0077458_1	UniRef90_UPI001EDE3A19	59.7	0.00000000211	type I-C CRISPR-associated protein Cas8c/Csd1	N/A
eggNOG-mapper	UHGV-0077458_1	1122919.KB905548_gene2302	65.1	0.0000000000965	CRISPR-associated protein (Cas_Csd1)	N/A
PADLOC	UHGV-0077458_1	cd09757	58.1	2.3e-16	CAS-I-C; effector_LS	CRISPR-CAS
Pfam	UHGV-0077458_1	PF09709	N/A	N/A	CRISPR-associated protein (Cas_Csd1)	Cas_Csd1
COG	UHGV-0077458_1	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
AcrCatalog	UHGV-0077458_2	cluster_11486	65.9	1.47e-16	NA	N/A
KOfam	UHGV-0077458_3	K07273	182.7	0	acm; lysozyme	N/A
PHROG	UHGV-0077458_3	phrog_291	137.8	9.99995e-41	endolysin	lysis
UniRef90	UHGV-0077458_3	UniRef90_D4M5A7	686.0	0	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-0077458_3	33035.JPJF01000043_gene994	194.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0077458_3	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0077458_3	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0077458_3	PF01183,NF003627,COG3757,COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0077458_4	PF13384,NF001074,COG3677	N/A	N/A	N/A	N/A
PHROG	UHGV-0077458_5	phrog_37799	72.9	1.6e-21	N/A	unknown function
UniRef90	UHGV-0077458_5	UniRef90_A0A373N7C7	291.0	0	Protein utxA	N/A
eggNOG-mapper	UHGV-0077458_5	411470.RUMGNA_02086	141.0	9.16001e-41	N/A	N/A
Pfam	UHGV-0077458_5	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0077458_5	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0077458_5	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0077458_5	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0077458_6	phrog_20274	143.8	8.09951e-43	N/A	unknown function
UniRef90	UHGV-0077458_6	UniRef90_A0A173TUK0	205.0	0	Predicted membrane protein	N/A
eggNOG-mapper	UHGV-0077458_6	1235799.C818_04238	156.0	0	Putative ABC-transporter type IV	N/A
Pfam	UHGV-0077458_6	PF06541	N/A	N/A	Putative ABC-transporter type IV	ABC_trans_CmpB
COG	UHGV-0077458_6	COG4905	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0077458_6	PF06541,COG4905	N/A	N/A	N/A	N/A
UniRef90	UHGV-0077458_7	UniRef90_UPI001C0C21D5	152.0	1.20932e-42	acyl carrier protein	N/A
eggNOG-mapper	UHGV-0077458_7	1235799.C818_04237	277.0	0	N/A	N/A
structural_annotation	UHGV-0077458_7	PF14301	N/A	N/A	N/A	N/A
PHROG	UHGV-0077458_8	phrog_5073	60.9	1.6e-17	tail fiber protein	tail
UniRef90	UHGV-0077458_8	UniRef90_UPI001A9A6571	298.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0077458_8	877414.ATWA01000019_gene2051	84.7	0.00000000000000166	N/A	N/A
Pfam	UHGV-0077458_8	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
KOfam	UHGV-0077458_10	K07296	41.4	0.000000000017	ADIPOQ, ACDC; adiponectin	N/A
PHROG	UHGV-0077458_10	phrog_10972	46.8	0.00000000000038	tail fiber protein	tail
UniRef90	UHGV-0077458_10	UniRef90_A0A374E9Q0	398.0	0	Collagen-like protein	N/A
Pfam	UHGV-0077458_10	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0077458_10	PF10651,NF007636,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0077458_11	phrog_11037	136.7	2.5e-40	N/A	unknown function
UniRef90	UHGV-0077458_11	UniRef90_A0A373N7H3	659.0	0	Peptidase M23	N/A
eggNOG-mapper	UHGV-0077458_11	33035.JPJF01000093_gene2240	327.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0077458_11	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0077458_11	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
COG	UHGV-0077458_11	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0077458_11	PF18013,PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0077458_12	phrog_13289	399.0	0	tail protein	tail
UniRef90	UHGV-0077458_12	UniRef90_A0A373N6D1	1193.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0077458_12	1235798.C817_02568	477.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0077458_12	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0077458_12	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0077458_12	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-0077458_12	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0077458_13	phrog_33	67.1	4.5e-19	distal tail protein Dit	tail
UniRef90	UHGV-0077458_13	UniRef90_UPI000E50043B	361.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0077458_13	1235798.C817_04593	209.0	0	phage tail	N/A
COG	UHGV-0077458_13	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0077458_13	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0077458_14	phrog_1272	214.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0077458_14	UniRef90_A0A373N7M8	1124.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0077458_14	1035184.HMPREF1042_1328	307.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-0077458_14	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0077458_14	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0077458_14	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0077458_17	phrog_88	98.4	8e-29	major tail protein	tail
UniRef90	UHGV-0077458_17	UniRef90_D4M596	381.0	0	Phage major tail protein, phi13 family	N/A
Pfam	UHGV-0077458_17	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0077458_17	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0077458_17	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0077458_18	phrog_5	48.2	0.00000000000027	tail completion or Neck1 protein	connector
UniRef90	UHGV-0077458_18	UniRef90_D4M595	231.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0077458_18	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0077458_18	TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0077458_19	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0077458_20	UniRef90_D4M593	230.0	0	Phage head-tail adaptor, putative, SPP1 family	N/A
structural_annotation	UHGV-0077458_20	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0077458_21	phrog_749	40.2	0.000000000063	N/A	unknown function
PHROG	UHGV-0077458_22	phrog_10	84.6	1e-24	major head protein	head and packaging
UniRef90	UHGV-0077458_22	UniRef90_D4M591	692.0	0	Phage capsid family	N/A
eggNOG-mapper	UHGV-0077458_22	1232452.BAIB02000007_gene1625	473.0	0	Phage capsid family	N/A
Pfam	UHGV-0077458_22	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0077458_22	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0077458_22	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0077458_22	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0077458_23	K01358	107.5	1.9e-31	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0077458_23	phrog_94	175.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0077458_23	UniRef90_D4M590	463.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0077458_23	1235792.C808_00085	207.0	0	Clp protease	N/A
Pfam	UHGV-0077458_23	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0077458_23	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0077458_23	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0077458_24	phrog_12	84.8	7.9e-25	portal protein	head and packaging
UniRef90	UHGV-0077458_24	UniRef90_A0A844KEF3	449.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0077458_24	1232452.BAIB02000007_gene1627	278.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0077458_24	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0077458_24	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0077458_24	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0077458_25	phrog_9	250.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0077458_25	UniRef90_D4M588	974.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0077458_25	1232452.BAIB02000007_gene1629	553.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0077458_25	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0077458_25	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0077458_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0077458_25	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0077458_26	phrog_5110	97.5	8.6e-29	terminase small subunit	head and packaging
UniRef90	UHGV-0077458_26	UniRef90_A0A1C5LZF0	103.0	3.25e-26	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0077458_26	1220589.CD32_01745	62.8	0.0000000000803	Phage terminase, small subunit	N/A
Pfam	UHGV-0077458_26	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0077458_26	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0077458_26	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0077458_27	phrog_119	48.1	0.00000000000017	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0077458_27	UniRef90_UPI0015F32291	141.0	8.82818e-43	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0077458_27	1405.DJ92_863	59.3	0.000000000137	HNH endonuclease	N/A
Pfam	UHGV-0077458_27	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0077458_27	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0077458_28	phrog_36	68.7	1.1e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0077458_28	UniRef90_A0A373MNQ3	198.0	0	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0077458_28	658655.HMPREF0988_02569	154.0	0	sigma factor activity	N/A
Pfam	UHGV-0077458_28	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0077458_28	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0077458_28	PF07374,MF_00674,TIGR02984,COG1595	N/A	N/A	N/A	N/A
KOfam	UHGV-0077458_30	K18830	47.4	0.00000000000048	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0077458_30	phrog_8	47.6	0.00000000000037	transcriptional regulator	transcription regulation
UniRef90	UHGV-0077458_30	UniRef90_A0A374E9Q7	181.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0077458_30	1048834.TC41_2515	53.9	0.0000000265	sequence-specific DNA binding	N/A
Pfam	UHGV-0077458_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0077458_30	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
PHROG	UHGV-0077458_33	phrog_7566	115.8	1.5e-34	N/A	unknown function
eggNOG-mapper	UHGV-0077458_33	665950.HMPREF1025_02547	174.0	0	N/A	N/A
eggNOG-mapper	UHGV-0077458_34	1196322.A370_05726	66.2	0.000000000000411	N/A	N/A
PHROG	UHGV-0077458_35	phrog_15077	89.3	8e-26	N/A	unknown function
UniRef90	UHGV-0077458_35	UniRef90_A0A3A6HZA9	238.0	0	N/A	N/A
eggNOG-mapper	UHGV-0077458_35	1280698.AUJS01000007_gene1019	374.0	0	N/A	N/A
structural_annotation	UHGV-0077458_35	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0077458_36	phrog_8470	233.6	0	N/A	unknown function
UniRef90	UHGV-0077458_36	UniRef90_UPI001C01E393	573.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0077458_36	1280698.AUJS01000007_gene1018	843.0	0	N/A	N/A
Pfam	UHGV-0077458_36	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0077458_36	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0077458_37	phrog_4433	69.9	1.2e-24	N/A	unknown function
eggNOG-mapper	UHGV-0077458_37	1280698.AUJS01000007_gene1017	191.0	0	N/A	N/A
eggNOG-mapper	UHGV-0077458_38	1280698.AUJS01000007_gene1016	232.0	0	N/A	N/A
KOfam	UHGV-0077458_39	K03469	62.4	1e-17	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0077458_39	phrog_531	62.9	6e-18	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0077458_39	UniRef90_D4M578	283.0	0	Ribonuclease HI	N/A
eggNOG-mapper	UHGV-0077458_39	665950.HMPREF1025_02551	153.0	1.4013e-45	RNase H	N/A
Pfam	UHGV-0077458_39	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0077458_39	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0077458_39	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0077458_40	phrog_3584	154.8	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0077458_40	665950.HMPREF1025_02552	315.0	0	N/A	N/A
structural_annotation	UHGV-0077458_40	PF21578,NF041486	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0077458_43	PF20037,COG3212	N/A	N/A	N/A	N/A
KOfam	UHGV-0077458_45	K18830	72.1	9.9e-21	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0077458_45	phrog_2967	55.7	0.000000000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-0077458_45	UniRef90_UPI0006C57785	240.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0077458_45	445972.ANACOL_03315	147.0	2.8026e-44	N/A	N/A
Pfam	UHGV-0077458_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0077458_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0077458_45	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0077458	Yes	29,891	43	85	1
UHGV-1541331	No	29,554	43	84	1
UHGV-2051684	No	15,593	43	44	1