vOTU vOTU-041692

vOTU: vOTU-041692

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-041692
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp003150355
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00771 → vGENUS-01126 → vOTU-041692
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2064965
Biosample ID	SAMN05971613
Genome length (bp)	33,072 bps
CheckV completeness	88.43% (Medium-quality)
CDS count	61
CDS density	93.36%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus	Total connections	16	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp003150355	Total connections	5	Host agreement	80

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 88.43)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-2064965_1	1226322.HMPREF1545_00079	54.7	0.00000000653	N/A	N/A
structural_annotation	UHGV-2064965_2	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-2064965_3	phrog_20016	189.7	0	N/A	unknown function
UniRef90	UHGV-2064965_3	UniRef90_A0A285PT46	206.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-2064965_3	1226322.HMPREF1545_00077	179.0	0	N/A	N/A
structural_annotation	UHGV-2064965_3	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-2064965_4	phrog_16490	129.6	1.2e-39	N/A	unknown function
eggNOG-mapper	UHGV-2064965_4	658655.HMPREF0988_00917	140.0	3.53e-38	N/A	N/A
PHROG	UHGV-2064965_5	phrog_22984	73.7	1.4e-21	N/A	unknown function
PHROG	UHGV-2064965_6	phrog_21718	104.7	7.9e-31	N/A	unknown function
eggNOG-mapper	UHGV-2064965_6	476272.RUMHYD_01768	74.7	0.00000000000000725	N/A	N/A
PHROG	UHGV-2064965_7	phrog_3754	101.9	5.6e-30	N/A	unknown function
eggNOG-mapper	UHGV-2064965_7	476272.RUMHYD_01764	154.0	0	N/A	N/A
PHROG	UHGV-2064965_9	phrog_199	66.1	4.2e-19	holin	lysis
UniRef90	UHGV-2064965_9	UniRef90_A0A3C0NPD5	184.0	0	Holin	N/A
eggNOG-mapper	UHGV-2064965_9	742738.HMPREF9460_00365	149.0	5.60519e-44	Bacteriophage holin family	N/A
Pfam	UHGV-2064965_9	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-2064965_9	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-2064965_9	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-2064965_9	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-2064965_10	phrog_14030	163.7	0	N/A	unknown function
UniRef90	UHGV-2064965_10	UniRef90_A0A316NTC6	215.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-2064965_10	1121115.AXVN01000051_gene809	181.0	0	NLP P60 protein	N/A
Pfam	UHGV-2064965_10	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-2064965_10	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-2064965_10	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-2064965_10	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-2064965_12	phrog_30034	116.5	2.9e-34	N/A	unknown function
UniRef90	UHGV-2064965_12	UniRef90_A0A2Y9CAD1	157.0	0	Carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-2064965_12	411460.RUMTOR_02099	133.0	6.16e-37	N/A	N/A
Pfam	UHGV-2064965_12	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-2064965_12	PF14600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2064965_15	PF07210,TIGR03000	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2064965_16	1408422.JHYF01000026_gene3527	57.8	0.000000203	nuclear chromosome segregation	N/A
COG	UHGV-2064965_16	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-2064965_17	phrog_32744	237.3	0	N/A	unknown function
eggNOG-mapper	UHGV-2064965_17	1120998.AUFC01000030_gene2247	163.0	1.97e-39	N/A	N/A
structural_annotation	UHGV-2064965_17	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2064965_18	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2064965_19	phrog_6900	121.3	1.2e-35	tail length tape measure protein	tail
eggNOG-mapper	UHGV-2064965_19	1499683.CCFF01000017_gene2565	181.0	1.4013e-45	tape measure	N/A
COG	UHGV-2064965_19	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2064965_19	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-2064965_21	phrog_18646	77.5	1.4e-22	N/A	unknown function
UniRef90	UHGV-2064965_21	UniRef90_B6CXF0	93.2	3.49e-22	Peptidase-colicin	N/A
eggNOG-mapper	UHGV-2064965_21	768704.Desmer_4456	48.9	0.00000896	N/A	N/A
PHROG	UHGV-2064965_22	phrog_885	72.5	4.5e-21	major tail protein	tail
UniRef90	UHGV-2064965_22	UniRef90_A0A843J9F0	165.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-2064965_22	1504822.CCNO01000012_gene492	203.0	0	N/A	N/A
structural_annotation	UHGV-2064965_22	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2064965_23	PF11367	N/A	N/A	N/A	N/A
Pfam	UHGV-2064965_24	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-2064965_24	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2064965_26	phrog_544	181.5	0	major head protein	head and packaging
UniRef90	UHGV-2064965_26	UniRef90_A0A810PZM2	487.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-2064965_26	1347392.CCEZ01000005_gene1236	242.0	0	N/A	N/A
Pfam	UHGV-2064965_26	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-2064965_26	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2064965_27	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-2064965_28	phrog_5	63.5	4.9e-18	tail completion or Neck1 protein	connector
UniRef90	UHGV-2064965_28	UniRef90_UPI0015C5E40B	80.9	9.37e-17	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-2064965_28	764299.STRIC_1434	64.7	0.0000000000247	N/A	N/A
structural_annotation	UHGV-2064965_28	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-2064965_30	phrog_2468	104.0	9.7e-32	head morphogenesis	head and packaging
UniRef90	UHGV-2064965_30	UniRef90_A0A7X5E1T7	321.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-2064965_30	1280685.AUKC01000004_gene1632	105.0	4.31e-22	Phage Mu protein F like protein	N/A
Pfam	UHGV-2064965_30	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-2064965_30	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2064965_30	PF04233,PF21814,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-2064965_31	phrog_64	135.5	2.69999e-40	portal protein	head and packaging
UniRef90	UHGV-2064965_31	UniRef90_A0A285PU84	400.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-2064965_31	411468.CLOSCI_00292	80.9	0.000000000000185	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-2064965_31	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-2064965_31	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-2064965_32	K06909	133.2	2.3e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2064965_32	phrog_2	156.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-2064965_32	UniRef90_A0A373MY72	515.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2064965_32	397290.C810_05187	463.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-2064965_32	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-2064965_32	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2064965_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2064965_32	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2064965_33	phrog_309	60.8	2.4e-17	terminase small subunit	head and packaging
UniRef90	UHGV-2064965_33	UniRef90_A0A1M5ZJM4	61.2	0.00000000096	Transposase	N/A
eggNOG-mapper	UHGV-2064965_33	1487921.DP68_08850	63.9	0.0000000000117	transposase activity	N/A
COG	UHGV-2064965_33	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
KOfam	UHGV-2064965_34	K07319	121.7	7e-36	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-2064965_34	phrog_498	425.2	0	DNA methyltransferase	other
UniRef90	UHGV-2064965_34	UniRef90_R5AIZ8	424.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-2064965_34	1423758.BN55_01455	395.0	0	DNA methylase	N/A
PADLOC	UHGV-2064965_34	MTase_II_00015	224.6	0	Type II methyltransferase	RM
Pfam	UHGV-2064965_34	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-2064965_34	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-2064965_34	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-2064965_34	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2064965_35	PF06530,MF_00674,TIGR01636,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-2064965_37	phrog_3584	161.8	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2064965_37	1226322.HMPREF1545_03841	248.0	0	N/A	N/A
structural_annotation	UHGV-2064965_37	PF01446,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-2064965_38	K19779	43.7	0.000000000004	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-2064965_38	phrog_599	50.5	0.000000000000042	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-2064965_38	56780.SYN_03368	47.4	0.00000214	translation initiation factor activity	N/A
Pfam	UHGV-2064965_38	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-2064965_38	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-2064965_38	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
COG	UHGV-2064965_38	COG1601	N/A	N/A	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	N/A
structural_annotation	UHGV-2064965_38	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-2064965_40	phrog_3136	132.3	1.7e-39	N/A	unknown function
UniRef90	UHGV-2064965_40	UniRef90_UPI001A9A8D4F	133.0	1.9e-36	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-2064965_40	642492.Clole_1416	64.7	0.0000000000388	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-2064965_40	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-2064965_40	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
Pfam	UHGV-2064965_42	PF09297	N/A	N/A	NADH pyrophosphatase zinc ribbon domain	zf-NADH-PPase
PHROG	UHGV-2064965_43	phrog_954	201.6	0	DNA methyltransferase	other
UniRef90	UHGV-2064965_43	UniRef90_A0A810Q0N4	292.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-2064965_43	411461.DORFOR_01143	274.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-2064965_43	MTase_II_00074	196.6	0	Type II methyltransferase	RM
Pfam	UHGV-2064965_43	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-2064965_43	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-2064965_43	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
UniRef90	UHGV-2064965_45	UniRef90_A0A345KQM6	98.2	3.2e-21	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-2064965_45	1589750.A0A0C5AEL6_9CAUD	98.2	5.37e-22	N/A	N/A
PHROG	UHGV-2064965_46	phrog_24518	60.2	3.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-2064965_46	1519439.JPJG01000077_gene922	60.5	0.0000000152	N/A	N/A
PHROG	UHGV-2064965_47	phrog_824	149.9	7.00649e-45	N/A	unknown function
UniRef90	UHGV-2064965_47	UniRef90_A0A6N8GXS9	169.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-2064965_47	665956.HMPREF1032_00132	145.0	5.77335e-43	VRR_NUC	N/A
Pfam	UHGV-2064965_47	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
PHROG	UHGV-2064965_58	phrog_3306	59.4	5.5e-17	N/A	unknown function
UniRef90	UHGV-2064965_58	UniRef90_UPI000CF972A3	100.0	4.85e-25	N/A	N/A
eggNOG-mapper	UHGV-2064965_58	469617.FUAG_01932	67.4	0.000000000000903	N/A	N/A
Pfam	UHGV-2064965_58	PF19670	N/A	N/A	N/A	DUF6173
structural_annotation	UHGV-2064965_58	PF19670	N/A	N/A	N/A	N/A
KOfam	UHGV-2064965_60	K18830	62.2	1.3e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-2064965_60	phrog_2967	49.5	0.00000000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-2064965_60	UniRef90_A0A1Q6RKG1	115.0	1.37e-30	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2064965_60	887325.HMPREF0381_0352	103.0	5.71e-27	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2064965_60	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2064965_60	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2064965_60	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2064965	Yes	33,072	55	88	1
UHGV-2095152	No	10,733	54	30	1