vOTU vOTU-041717

vOTU: vOTU-041717

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-041717
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-03104 → vGENUS-04264 → vOTU-041717
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Acidaminococcus → Acidaminococcus massiliensis
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-2075980
Biosample ID	SAMN05971612
Genome length (bp)	29,095 bps
CheckV completeness	52.00% (Medium-quality)
CDS count	37
CDS density	90.85%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Acidaminococcus → Acidaminococcus massiliensis	Total connections	27	Host agreement	81.48
PHIST-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Acidaminococcus	Total connections	6	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 52)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2075980_1	K03111	130.9	1.5e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2075980_1	phrog_44	131.7	5.2e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2075980_1	UniRef90_D2RN22	184.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2075980_1	591001.Acfer_0039	184.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-2075980_1	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2075980_1	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2075980_1	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2075980_1	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2075980_1	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-2075980_2	K01520	138.4	5.60001e-41	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-2075980_2	phrog_135	137.0	8.80001e-41	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2075980_2	UniRef90_UPI00094EBE41	184.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-2075980_2	66692.ABC2847	120.0	2.41e-32	deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
Pfam	UHGV-2075980_2	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-2075980_2	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-2075980_2	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-2075980_2	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-2075980_4	phrog_244	66.2	6.3e-19	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2075980_4	UniRef90_A0A841R0Q1	144.0	1.03976e-42	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-2075980_4	1123250.KB908417_gene653	156.0	0	N/A	N/A
structural_annotation	UHGV-2075980_4	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-2075980_10	phrog_1048	81.5	1.2e-23	N/A	unknown function
UniRef90	UHGV-2075980_10	UniRef90_UPI000881EF47	66.2	0.000000000523	N/A	N/A
eggNOG-mapper	UHGV-2075980_10	1235800.C819_00487	94.4	6.76e-23	N/A	N/A
Pfam	UHGV-2075980_10	PF11195	N/A	N/A	N/A	DUF2829
Pfam	UHGV-2075980_10	PF11753	N/A	N/A	N/A	DUF3310
dbAPIS	UHGV-2075980_10	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
eggNOG-mapper	UHGV-2075980_11	401526.TcarDRAFT_1279	78.6	3.12e-16	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-2075980_11	PF05263,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-2075980_12	K07726	45.9	0.000000000001	K07726; putative transcriptional regulator	N/A
PHROG	UHGV-2075980_12	phrog_2104	40.0	0.000000000066	N/A	unknown function
UniRef90	UHGV-2075980_12	UniRef90_UPI0008D9FDA4	125.0	1.39e-36	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2075980_12	1280680.AUJU01000007_gene2221	56.6	0.000000000649	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2075980_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2075980_12	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-2075980_12	PF01381,NF040522,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-2075980_13	phrog_31110	46.4	0.00000000000055	N/A	unknown function
UniRef90	UHGV-2075980_14	UniRef90_UPI00189AEA10	63.2	0.00000000132	terminase small subunit	N/A
eggNOG-mapper	UHGV-2075980_14	1280689.AUJC01000003_gene961	60.5	0.00000000192	Terminase small subunit	N/A
COG	UHGV-2075980_14	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
PHROG	UHGV-2075980_15	phrog_5902	244.9	0	N/A	unknown function
UniRef90	UHGV-2075980_15	UniRef90_A0A5D6WD94	561.0	0	Terminase	N/A
eggNOG-mapper	UHGV-2075980_15	1485543.JMME01000020_gene792	555.0	0	Terminase RNaseH-like domain	N/A
COG	UHGV-2075980_15	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-2075980_15	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2075980_16	PF21621,MF_01255,NF009806,COG4766	N/A	N/A	N/A	N/A
PHROG	UHGV-2075980_17	phrog_1216	74.1	9.9e-22	portal protein	head and packaging
eggNOG-mapper	UHGV-2075980_17	1232428.CAVO010000067_gene425	221.0	0	Membrane	N/A
COG	UHGV-2075980_17	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-2075980_18	phrog_1216	211.0	0	portal protein	head and packaging
UniRef90	UHGV-2075980_18	UniRef90_A0A662FJS5	216.0	0	Poly(3-hydroxybutyrate) depolymerase	N/A
eggNOG-mapper	UHGV-2075980_18	1485543.JMME01000020_gene791	400.0	0	Membrane	N/A
COG	UHGV-2075980_18	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
eggNOG-mapper	UHGV-2075980_20	1232428.CAVO010000067_gene424	132.0	1.01e-31	N/A	N/A
PHROG	UHGV-2075980_21	phrog_1328	165.3	0	major head protein	head and packaging
UniRef90	UHGV-2075980_21	UniRef90_UPI000413677B	324.0	0	N/A	N/A
eggNOG-mapper	UHGV-2075980_21	1232428.CAVO010000067_gene423	324.0	0	N/A	N/A
Pfam	UHGV-2075980_21	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-2075980_21	PF17236,MF_04133,NF033394,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2075980_23	PF20387	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2075980_24	1485543.JMME01000020_gene785	96.3	5.32e-23	N/A	N/A
structural_annotation	UHGV-2075980_24	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-2075980_25	phrog_26466	51.5	7e-16	N/A	unknown function
eggNOG-mapper	UHGV-2075980_25	592028.GCWU000321_01390	115.0	6.32e-24	Putative phage tail protein	N/A
COG	UHGV-2075980_25	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2075980_25	PF16389,PF19077,MF_04116,NF010681,COG3401	N/A	N/A	N/A	N/A
PHROG	UHGV-2075980_27	phrog_33356	78.1	1.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-2075980_27	1111454.HMPREF1250_0267	63.9	0.000000000051	N/A	N/A
PHROG	UHGV-2075980_28	phrog_3279	63.1	2.7e-20	tail fiber protein	tail
eggNOG-mapper	UHGV-2075980_28	1064535.MELS_1932	108.0	8.59e-22	Membrane	N/A
COG	UHGV-2075980_28	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
KOfam	UHGV-2075980_30	K14059	128.0	1.3e-37	int; integrase	N/A
PHROG	UHGV-2075980_30	phrog_1	130.6	1.7e-38	integrase	integration and excision
UniRef90	UHGV-2075980_30	UniRef90_UPI001D06BF58	288.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-2075980_30	568816.Acin_1821	300.0	0	Phage integrase family	N/A
Pfam	UHGV-2075980_30	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2075980_30	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2075980_30	PF00589,MF_01808,TIGR02224,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2075980_32	883156.HMPREF9282_00569	204.0	0	N/A	N/A
structural_annotation	UHGV-2075980_32	PF11134,MF_03008,NF010237,TIGR04362,COG4257	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2075980_33	568816.Acin_1216	56.2	0.0000000178	N/A	N/A
UniRef90	UHGV-2075980_35	UniRef90_A0A1G6NNF8	297.0	0	Intein N-terminal splicing region	N/A
eggNOG-mapper	UHGV-2075980_35	1232428.CAVO010000067_gene416	311.0	0	N/A	N/A
Pfam	UHGV-2075980_35	PF07591	N/A	N/A	Pretoxin HINT domain	PT-HINT
structural_annotation	UHGV-2075980_35	PF01079,NF038136	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2075980_37	1123288.SOV_2c10740	94.0	7.39e-17	N/A	N/A
Pfam	UHGV-2075980_37	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2075980	Yes	29,095	51	52	1
UHGV-2072074	No	20,196	51	36	1