vOTU vOTU-041820

vOTU: vOTU-041820

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-041820
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-00662 → vGENUS-00795 → vOTU-041820
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0063402
Biosample ID	SAMEA2466899
Genome length (bp)	19,190 bps
CheckV completeness	53.82% (Medium-quality)
CDS count	28
CDS density	93.14%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	45	Host agreement	91.11
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	1481	Host agreement	99.59

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 53.82)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0063402_1	717606.PaecuDRAFT_3120	95.5	1.53e-20	Phage minor capsid protein 2	N/A
COG	UHGV-0063402_1	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0063402_2	PF12305	N/A	N/A	N/A	N/A
PHROG	UHGV-0063402_3	phrog_194	101.9	7.6e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-0063402_3	UniRef90_R6U550	377.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0063402_3	742765.HMPREF9457_02126	154.0	8.40779e-45	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0063402_3	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0063402_3	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0063402_4	phrog_544	345.2	0	major head protein	head and packaging
UniRef90	UHGV-0063402_4	UniRef90_R6T873	661.0	0	Major head protein	N/A
eggNOG-mapper	UHGV-0063402_4	936580.HMPREF1516_0718	313.0	0	N/A	N/A
NCBIFam	UHGV-0063402_4	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0063402_4	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0063402_5	phrog_541	93.3	2.1e-27	head-tail adaptor	connector
UniRef90	UHGV-0063402_5	UniRef90_A0A371AQT0	102.0	7.06e-26	N/A	N/A
eggNOG-mapper	UHGV-0063402_5	1304866.K413DRAFT_3039	97.1	2.48e-24	N/A	N/A
PHROG	UHGV-0063402_6	phrog_3366	76.9	2.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0063402_6	1449050.JNLE01000003_gene3887	82.8	7.73e-19	N/A	N/A
Pfam	UHGV-0063402_6	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0063402_6	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0063402_7	phrog_556	124.2	4.7e-37	minor head protein	head and packaging
UniRef90	UHGV-0063402_7	UniRef90_UPI00143BEF55	124.0	6.89e-34	minor capsid protein	N/A
eggNOG-mapper	UHGV-0063402_7	1449050.JNLE01000003_gene3886	107.0	1.28e-27	N/A	N/A
Pfam	UHGV-0063402_7	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0063402_7	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0063402_8	phrog_3266	123.4	1.1e-36	tail completion	connector
eggNOG-mapper	UHGV-0063402_8	411902.CLOBOL_00130	112.0	1.08e-29	N/A	N/A
structural_annotation	UHGV-0063402_8	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0063402_9	phrog_3099	148.7	2.66247e-44	N/A	unknown function
eggNOG-mapper	UHGV-0063402_9	1160721.RBI_II00532	206.0	0	N/A	N/A
structural_annotation	UHGV-0063402_9	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0063402_10	phrog_11299	184.7	0	N/A	unknown function
structural_annotation	UHGV-0063402_10	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0063402_11	phrog_706	143.1	1.60028e-42	N/A	unknown function
UniRef90	UHGV-0063402_11	UniRef90_UPI001B3C82AE	216.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0063402_11	1449050.JNLE01000003_gene3882	197.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0063402_11	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0063402_11	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0063402_12	phrog_1535	304.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0063402_12	UniRef90_R6TDK7	1266.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-0063402_12	1226322.HMPREF1545_00059	403.0	0	tape measure	N/A
COG	UHGV-0063402_12	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0063402_12	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0063402_13	phrog_1194	89.7	2.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-0063402_13	1160721.RBI_II00527	207.0	0	N/A	N/A
structural_annotation	UHGV-0063402_13	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0063402_14	phrog_6616	51.9	1.2e-24	tail protein	tail
eggNOG-mapper	UHGV-0063402_14	1160721.RBI_II00526	706.0	0	N/A	N/A
structural_annotation	UHGV-0063402_14	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0063402_18	phrog_13256	81.0	7.7e-24	N/A	unknown function
eggNOG-mapper	UHGV-0063402_18	1160721.RBI_II00522	131.0	1.96e-39	N/A	N/A
KOfam	UHGV-0063402_19	K07273	183.3	0	acm; lysozyme	N/A
PHROG	UHGV-0063402_19	phrog_291	147.4	1.09301e-43	endolysin	lysis
UniRef90	UHGV-0063402_19	UniRef90_W0U9I6	597.0	0	Endolysin (Glycoside Hydrolase Family 25 protein )	N/A
eggNOG-mapper	UHGV-0063402_19	1160721.RBI_II00521	597.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0063402_19	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0063402_19	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0063402_19	PF01183,PF01471,COG3757	N/A	N/A	N/A	N/A
KOfam	UHGV-0063402_21	K06223	227.1	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0063402_21	phrog_56	211.2	0	DNA methyltransferase	other
UniRef90	UHGV-0063402_21	UniRef90_W0U9G5	505.0	0	Site-specific DNA-methyltransferase (adenine-specific)	N/A
eggNOG-mapper	UHGV-0063402_21	1160721.RBI_II00519	505.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0063402_21	MTase_II_00039	140.1	3.20001e-41	Type II methyltransferase	RM
Pfam	UHGV-0063402_21	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
NCBIFam	UHGV-0063402_21	TIGR00571.1	N/A	N/A	Dam family site-specific DNA-(adenine-N6)-methyltransferase	N/A
COG	UHGV-0063402_21	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0063402_21	PF02086,MF_00934,TIGR00571,COG0338	N/A	N/A	N/A	N/A
KOfam	UHGV-0063402_22	K07727	68.8	1.4e-19	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-0063402_22	phrog_3	44.6	0.0000000000058	transcriptional repressor	transcription regulation
UniRef90	UHGV-0063402_22	UniRef90_W0U882	126.0	4.87e-37	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0063402_22	1160721.RBI_II00518	126.0	8.17e-38	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0063402_22	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0063402_22	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0063402_22	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0063402_23	K06413	361.0	0	spoVK; stage V sporulation protein K	N/A
PHROG	UHGV-0063402_23	phrog_4339	112.2	5.4e-33	N/A	unknown function
UniRef90	UHGV-0063402_23	UniRef90_A0A1C6CBZ0	995.0	0	Proteasome-activating nucleotidase	N/A
eggNOG-mapper	UHGV-0063402_23	1160721.RBI_I00197	1005.0	0	ATPase family associated with various cellular activities (AAA)	N/A
Pfam	UHGV-0063402_23	PF00004	N/A	N/A	ATPase family associated with various cellular activities (AAA)	AAA
Pfam	UHGV-0063402_23	PF17866	N/A	N/A	AAA lid domain	AAA_lid_6
COG	UHGV-0063402_23	COG0464	N/A	N/A	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	N/A
eggNOG-mapper	UHGV-0063402_25	1160721.RBI_I00199	251.0	0	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids	N/A
COG	UHGV-0063402_25	COG0593	N/A	N/A	Chromosomal replication initiation ATPase DnaA	N/A
eggNOG-mapper	UHGV-0063402_28	1160721.RBI_I00486	68.6	0.000000000785	COG3209 Rhs family protein	N/A
Pfam	UHGV-0063402_28	PF18884	N/A	N/A	Bacterial TSP3 repeat	TSP3_bac
COG	UHGV-0063402_28	COG2304	N/A	N/A	Secreted protein containing bacterial Ig-like domain and vWFA domain	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0063402	Yes	19,190	44	54	1
UHGV-2200306	No	10,821	41	30	1