vOTU vOTU-041990

vOTU: vOTU-041990

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-041990
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00187 → vGENUS-00218 → vOTU-041990
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales
Host range breadth	Order
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0142820
Biosample ID	SAMN05971526
Genome length (bp)	36,992 bps
CheckV completeness	80.18% (Medium-quality)
CDS count	56
CDS density	92.18%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	15	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales	Total connections	22	Host agreement	95.45

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 80.18)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0142820_1	phrog_229	95.1	9.2e-28	MazG-like pyrophosphatase	other
UniRef90	UHGV-0142820_1	UniRef90_UPI001899D94E	209.0	0	nucleoside triphosphate pyrophosphohydrolase family protein	N/A
eggNOG-mapper	UHGV-0142820_1	445335.CBN_1220	108.0	1.71e-29	MazG nucleotide pyrophosphohydrolase	N/A
Pfam	UHGV-0142820_1	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-0142820_1	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
KOfam	UHGV-0142820_2	K03698	46.9	0.00000000000041	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-0142820_2	phrog_28876	105.6	3.5e-31	metal-dependent phosphohydrolase	other
UniRef90	UHGV-0142820_2	UniRef90_A0A1C5MUY3	206.0	0	Predicted HD-superfamily hydrolase	N/A
eggNOG-mapper	UHGV-0142820_2	1235800.C819_00499	161.0	0	metal-dependent phosphohydrolase, HD sub domain	N/A
COG	UHGV-0142820_2	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-0142820_2	PF21447,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
KOfam	UHGV-0142820_3	K03465	200.9	0	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0142820_3	phrog_85	137.2	8.10007e-41	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0142820_3	UniRef90_UPI001898977C	424.0	0	FAD-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-0142820_3	1336241.JAEB01000001_gene147	252.0	0	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-0142820_3	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-0142820_3	TIGR02170.1	N/A	N/A	FAD-dependent thymidylate synthase	N/A
COG	UHGV-0142820_3	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
structural_annotation	UHGV-0142820_3	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0142820_6	phrog_30550	189.6	0	N/A	unknown function
UniRef90	UHGV-0142820_6	UniRef90_A0A6N9PX25	161.0	0	Cell wall hydrolase	N/A
eggNOG-mapper	UHGV-0142820_6	1519439.JPJG01000077_gene920	144.0	4.74059e-42	Cell Wall Hydrolase	N/A
structural_annotation	UHGV-0142820_6	TIGR02869	N/A	N/A	N/A	N/A
PHROG	UHGV-0142820_7	phrog_1829	138.1	5.70006e-41	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0142820_7	UniRef90_UPI001899186E	521.0	0	primase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0142820_7	1121866.AUGK01000003_gene1409	207.0	0	Phage plasmid primase, P4 family domain protein	N/A
Pfam	UHGV-0142820_7	PF08708	N/A	N/A	Primase C terminal 1 (PriCT-1)	PriCT_1
COG	UHGV-0142820_7	COG4983	N/A	N/A	Primase-polymerase (Primpol) domain protein	N/A
structural_annotation	UHGV-0142820_7	PF08708,PF09250,COG4983	N/A	N/A	N/A	N/A
KOfam	UHGV-0142820_8	K07171	85.3	1.1e-24	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-0142820_8	phrog_1936	92.3	5.4e-27	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0142820_8	UniRef90_UPI001D0750B0	234.0	0	type II toxin-antitoxin system PemK/MazF family toxin	N/A
eggNOG-mapper	UHGV-0142820_8	908340.HMPREF9406_0263	80.1	7.07e-18	Toxic component of a toxin-antitoxin (TA) module	N/A
Pfam	UHGV-0142820_8	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-0142820_8	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-0142820_8	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
PHROG	UHGV-0142820_9	phrog_1156	318.3	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0142820_9	UniRef90_H1CER1	988.0	0	Phage/plasmid primase, P4 family domain-containing protein	N/A
eggNOG-mapper	UHGV-0142820_9	649747.HMPREF0083_00553	320.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0142820_9	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0142820_9	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-0142820_9	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-0142820_9	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0142820_9	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0142820_9	PF08706,PF05272,PF02257,MF_04000,NF005477,COG3378	N/A	N/A	N/A	N/A
PHROG	UHGV-0142820_11	phrog_22389	48.1	0.00000000000013	N/A	unknown function
structural_annotation	UHGV-0142820_11	PF01402,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0142820_16	phrog_606	51.2	0.000000000000017	terminase small subunit	head and packaging
UniRef90	UHGV-0142820_16	UniRef90_UPI001D08D6B6	354.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0142820_16	1235793.C809_00539	69.7	0.00000000000275	N/A	N/A
Pfam	UHGV-0142820_16	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0142820_16	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0142820_19	phrog_6244	52.2	0.000000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0142820_19	1354300.AUQY01000005_gene215	109.0	3.49e-30	N/A	N/A
UniRef90	UHGV-0142820_22	UniRef90_A0A7C6Y3R2	68.2	0.000000000000419	Helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0142820_22	PF20075,TIGR03070	N/A	N/A	N/A	N/A
KOfam	UHGV-0142820_23	K14060	95.8	5.8e-28	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0142820_23	phrog_125	140.2	1.29998e-41	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0142820_23	UniRef90_UPI001A9B5A42	407.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0142820_23	1280692.AUJL01000043_gene3363	170.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0142820_23	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0142820_23	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0142820_23	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0142820_25	phrog_1233	77.8	1.6e-22	N/A	unknown function
UniRef90	UHGV-0142820_25	UniRef90_UPI001C39EFB9	120.0	4.23e-33	Dienelactone hydrolase family protein	N/A
eggNOG-mapper	UHGV-0142820_25	357809.Cphy_2967	117.0	2.71e-32	N/A	N/A
PHROG	UHGV-0142820_26	phrog_38	150.6	9.80909e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0142820_26	UniRef90_A0A6I2QXZ5	1045.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0142820_26	1298920.KI911353_gene2682	296.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-0142820_26	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0142820_26	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0142820_26	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0142820_27	phrog_64	227.2	0	portal protein	head and packaging
UniRef90	UHGV-0142820_27	UniRef90_UPI001D08CF6B	951.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0142820_27	1123263.AUKY01000015_gene1609	417.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0142820_27	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0142820_27	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0142820_30	phrog_1328	121.3	6.4e-36	major head protein	head and packaging
UniRef90	UHGV-0142820_30	UniRef90_UPI00164DD2D5	661.0	0	N/A	N/A
eggNOG-mapper	UHGV-0142820_30	665956.HMPREF1032_03619	236.0	0	N/A	N/A
Pfam	UHGV-0142820_30	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0142820_30	PF17236,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0142820_31	UniRef90_UPI00164E20D5	207.0	0	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0142820_31	1298920.KI911353_gene2658	62.8	0.0000000000232	N/A	N/A
Pfam	UHGV-0142820_31	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0142820_31	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0142820_32	1121866.AUGK01000003_gene1432	76.3	5.12e-16	N/A	N/A
structural_annotation	UHGV-0142820_34	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0142820_35	phrog_158	55.4	0.0000000000000013	major tail protein	tail
UniRef90	UHGV-0142820_35	UniRef90_UPI00164D954A	274.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0142820_35	1232453.BAIF02000058_gene1634	96.3	1.43e-23	N/A	N/A
structural_annotation	UHGV-0142820_35	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0142820_36	UniRef90_UPI00164D364F	229.0	0	N/A	N/A
eggNOG-mapper	UHGV-0142820_36	469596.HMPREF9488_01311	89.0	1.74e-21	N/A	N/A
Pfam	UHGV-0142820_36	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0142820_36	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0142820_38	phrog_1535	147.5	1.4013e-45	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0142820_38	1121866.AUGK01000003_gene1437	281.0	0	phage tail tape measure protein	N/A
COG	UHGV-0142820_38	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
structural_annotation	UHGV-0142820_38	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0142820_39	phrog_1194	93.6	1.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-0142820_39	1298920.KI911353_gene4840	135.0	2.15e-39	N/A	N/A
Pfam	UHGV-0142820_39	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0142820_39	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0142820_40	phrog_13879	274.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0142820_40	665956.HMPREF1032_03630	214.0	0	N/A	N/A
structural_annotation	UHGV-0142820_40	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0142820_41	phrog_18725	48.2	7.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0142820_41	1226322.HMPREF1545_00062	94.0	1.31e-21	N/A	N/A
PHROG	UHGV-0142820_42	phrog_37900	91.7	6.1e-28	N/A	unknown function
UniRef90	UHGV-0142820_42	UniRef90_UPI00164D57E4	691.0	0	N/A	N/A
eggNOG-mapper	UHGV-0142820_42	1519439.JPJG01000060_gene1894	184.0	0	N/A	N/A
Pfam	UHGV-0142820_42	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0142820_42	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0142820_42	PF19789,PF14686,TIGR04183,COG2512	N/A	N/A	N/A	N/A
PHROG	UHGV-0142820_43	phrog_30516	58.0	7.8e-17	N/A	unknown function
structural_annotation	UHGV-0142820_43	PF05635,NF008911	N/A	N/A	N/A	N/A
UniRef90	UHGV-0142820_44	UniRef90_H7BUT5	60.8	0.0000000000764	N/A	N/A
Pfam	UHGV-0142820_44	PF19789	N/A	N/A	N/A	DUF6273
KOfam	UHGV-0142820_45	K00986	73.4	3.3e-21	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0142820_45	phrog_1423	182.0	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0142820_45	UniRef90_UPI00164D8919	766.0	0	RNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0142820_45	1410650.JHWL01000003_gene2820	238.0	0	Reverse transcriptase	N/A
PADLOC	UHGV-0142820_45	icity0040	64.0	3.7e-18	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0142820_45	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0142820_45	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0142820_45	PF00078,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0142820_46	phrog_30034	71.6	1.2e-20	N/A	unknown function
UniRef90	UHGV-0142820_46	UniRef90_UPI00189E45A0	147.0	5.21003e-41	chitinase	N/A
eggNOG-mapper	UHGV-0142820_46	994573.T472_0212005	106.0	1.25e-25	N/A	N/A
Pfam	UHGV-0142820_46	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
PHROG	UHGV-0142820_47	phrog_1863	69.9	2.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0142820_47	718252.FP2_04900	110.0	9.97e-31	N/A	N/A
PHROG	UHGV-0142820_49	phrog_14030	41.5	0.0000000000048	N/A	unknown function
UniRef90	UHGV-0142820_49	UniRef90_UPI00164EA432	573.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0142820_49	1235797.C816_02842	230.0	0	mannosyl-glycoprotein	N/A
COG	UHGV-0142820_49	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0142820_49	PF08460,PF10030,TIGR02594,NF041850,COG4322,COG4991	N/A	N/A	N/A	N/A
KOfam	UHGV-0142820_52	K06400	363.8	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0142820_52	phrog_95	349.3	0	integrase	integration and excision
UniRef90	UHGV-0142820_52	UniRef90_UPI00164E9A6A	1034.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0142820_52	445972.ANACOL_03320	390.0	0	N/A	N/A
Pfam	UHGV-0142820_52	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0142820_52	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0142820_52	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0142820_52	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0142820_52	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0142820_53	K01356	91.1	2.2e-26	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0142820_53	phrog_4	100.7	1.9e-29	transcriptional repressor	transcription regulation
UniRef90	UHGV-0142820_53	UniRef90_UPI00164CF79B	430.0	0	S24 family peptidase	N/A
eggNOG-mapper	UHGV-0142820_53	641112.ACOK01000103_gene520	110.0	2.96e-27	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0142820_53	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0142820_53	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0142820_53	PF00717,PF12844,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
PHROG	UHGV-0142820_56	phrog_37900	61.5	3.1e-19	N/A	unknown function
UniRef90	UHGV-0142820_56	UniRef90_UPI00164E9551	506.0	0	N/A	N/A
eggNOG-mapper	UHGV-0142820_56	1519439.JPJG01000060_gene1894	106.0	1.36e-24	N/A	N/A
Pfam	UHGV-0142820_56	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0142820_56	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0142820_56	PF19789	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0142820	Yes	36,992	52	80	1
UHGV-0064258	No	20,049	52	44	1
UHGV-1709554	No	20,049	52	44	1