vOTU vOTU-042046

vOTU: vOTU-042046

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-042046
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 → vSUBFAM-04831 → vOTU-042046
Host lineage
Host range breadth
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1385483
Biosample ID	N/A
Genome length (bp)	30,076 bps
CheckV completeness	86.92% (Medium-quality)
CDS count	43
CDS density	91.13%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 86.92)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1385483_1	phrog_4581	103.1	2.4e-30	terminase small subunit	head and packaging
UniRef90	UHGV-1385483_1	UniRef90_A0A843HN34	219.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1385483_1	1536769.P40081_01050	200.0	0	HNH nucleases	N/A
COG	UHGV-1385483_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1385483_1	PF13671,MF_03171,NF005251,NF008448,COG4639	N/A	N/A	N/A	N/A
PHROG	UHGV-1385483_2	phrog_309	106.7	1.7e-31	terminase small subunit	head and packaging
UniRef90	UHGV-1385483_2	UniRef90_A0A6B9SX71	160.0	0	Transposase/terminase small subunit	N/A
eggNOG-mapper	UHGV-1385483_2	500633.CLOHIR_01443	103.0	3.11e-26	HNH endonuclease	N/A
COG	UHGV-1385483_2	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-1385483_2	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-1385483_3	K00571	140.1	1.99993e-41	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1385483_3	phrog_498	493.1	0	DNA methyltransferase	other
UniRef90	UHGV-1385483_3	UniRef90_A0A233V9X7	507.0	0	DNA modification methylase	N/A
eggNOG-mapper	UHGV-1385483_3	290402.Cbei_1632	468.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-1385483_3	MTase_II_00015	444.3	0	Type II methyltransferase	RM
Pfam	UHGV-1385483_3	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1385483_3	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1385483_3	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1385483_3	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-1385483_4	phrog_190	132.1	3.4e-39	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1385483_4	UniRef90_UPI001C0F5697	139.0	2.96e-40	N/A	N/A
eggNOG-mapper	UHGV-1385483_4	1121105.ATXL01000006_gene1363	102.0	2.93e-26	N/A	N/A
Pfam	UHGV-1385483_4	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1385483_4	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1385483_6	phrog_9804	75.9	4.8e-22	N/A	unknown function
eggNOG-mapper	UHGV-1385483_6	1121344.JHZO01000003_gene981	60.8	0.0000000027	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1385483_6	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1385483_6	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1385483_7	phrog_11233	136.8	1.3e-40	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1385483_7	931626.Awo_c35220	151.0	1.32002e-41	DnaD domain protein	N/A
COG	UHGV-1385483_7	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1385483_7	PF13463,NF040642,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-1385483_8	phrog_8684	80.0	8e-24	N/A	unknown function
UniRef90	UHGV-1385483_8	UniRef90_UPI001411DA8D	94.7	3.34e-22	YopX family protein	N/A
eggNOG-mapper	UHGV-1385483_8	742767.HMPREF9456_03352	72.8	0.0000000000000257	YopX protein	N/A
Pfam	UHGV-1385483_8	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1385483_8	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1385483_8	PF09643,TIGR01671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1385483_10	PF07073,COG4568	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1385483_13	266117.Rxyl_0586	48.1	0.00000626	PFAM Uncharacterised protein family UPF0150	N/A
PADLOC	UHGV-1385483_13	retron_type_VI_hth_cluster2_1	42.5	0.00000000002	N/A	Retron
Pfam	UHGV-1385483_13	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1385483_13	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1385483_13	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1385483_14	K00558	68.3	4.3e-25	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1385483_14	phrog_17284	299.8	0	N/A	unknown function
UniRef90	UHGV-1385483_14	UniRef90_A0A350XVB1	481.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1385483_14	1291050.JAGE01000001_gene476	439.0	0	C-5 cytosine-specific DNA methylase	N/A
Pfam	UHGV-1385483_14	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1385483_14	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1385483_14	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1385483_16	K22299	54.3	0.0000000000000032	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1385483_16	phrog_8	60.7	3.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1385483_16	UniRef90_A0A6B9SUY3	110.0	3.88e-29	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1385483_16	1120973.AQXL01000105_gene2576	64.3	0.0000000000117	transcriptional	N/A
PADLOC	UHGV-1385483_16	retron_type_VI_hth_cluster2_1	44.3	0.0000000000043	N/A	Retron
Pfam	UHGV-1385483_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1385483_16	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1385483_16	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1385483_17	K06400	370.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1385483_17	phrog_95	374.0	0	integrase	integration and excision
UniRef90	UHGV-1385483_17	UniRef90_A0A1L8D0Y3	252.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-1385483_17	1121422.AUMW01000019_gene1766	239.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1385483_17	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1385483_17	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1385483_17	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1385483_17	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1385483_17	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1385483_18	K11089	199.6	0	TROVE2, SSA2; 60 kDa SS-A/Ro ribonucleoprotein	N/A
PHROG	UHGV-1385483_18	phrog_850	233.9	0	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1385483_18	UniRef90_UPI0001E2DE00	513.0	0	TROVE domain-containing protein	N/A
eggNOG-mapper	UHGV-1385483_18	509191.AEDB02000022_gene3058	513.0	0	TROVE domain	N/A
Pfam	UHGV-1385483_18	PF05731	N/A	N/A	TROVE domain	TROVE
COG	UHGV-1385483_18	COG2304	N/A	N/A	Secreted protein containing bacterial Ig-like domain and vWFA domain	N/A
structural_annotation	UHGV-1385483_18	PF05731,PF05762,MF_01340,NF041674,COG3552	N/A	N/A	N/A	N/A
KOfam	UHGV-1385483_20	K01447	64.1	2.4e-18	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1385483_20	phrog_15001	159.6	0	endolysin	lysis
UniRef90	UHGV-1385483_20	UniRef90_A0A644YEA3	229.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-1385483_20	1235835.C814_01292	224.0	0	Ami_2	N/A
Pfam	UHGV-1385483_20	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1385483_20	PF00395	N/A	N/A	S-layer homology domain	SLH
COG	UHGV-1385483_20	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1385483_20	PF18342,PF01510,NF041850,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1385483_21	phrog_3301	139.5	1.29998e-41	pyrophosphatase	other
eggNOG-mapper	UHGV-1385483_21	411459.RUMOBE_01042	141.0	2.69049e-42	Mazg nucleotide pyrophosphohydrolase	N/A
COG	UHGV-1385483_21	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-1385483_21	COG1694	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1385483_26	1007096.BAGW01000036_gene2663	58.5	0.000000000646	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1385483_26	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1385483_26	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1385483_27	phrog_1220	170.7	0	head protein	head and packaging
eggNOG-mapper	UHGV-1385483_27	588581.Cpap_1262	133.0	7.9e-31	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-1385483_27	PF03906,PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-1385483_28	phrog_538	220.9	0	minor tail protein	tail
UniRef90	UHGV-1385483_28	UniRef90_A0A843HVV8	272.0	0	Siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-1385483_28	768704.Desmer_4453	162.0	2.88667e-43	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-1385483_28	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-1385483_28	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1385483_29	phrog_33	86.8	3.8e-25	distal tail protein Dit	tail
UniRef90	UHGV-1385483_29	UniRef90_A0A843HU58	272.0	0	Phage tail family protein	N/A
eggNOG-mapper	UHGV-1385483_29	706433.HMPREF9430_01256	90.1	3.21e-18	Phage tail protein	N/A
Pfam	UHGV-1385483_29	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
structural_annotation	UHGV-1385483_29	PF20753,PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1385483_30	phrog_23464	272.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1385483_30	665950.HMPREF1025_02660	177.0	1.55544e-43	phage tail tape measure protein	N/A
COG	UHGV-1385483_30	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1385483_30	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1385483_32	phrog_1299	42.1	0.000000000011	holin	lysis
UniRef90	UHGV-1385483_32	UniRef90_A0A2V2F2X8	103.0	3.59e-27	Enolase	N/A
eggNOG-mapper	UHGV-1385483_32	693746.OBV_13280	53.9	0.0000000258	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1385483_32	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1385483_32	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1385483_33	phrog_1863	59.7	2.8e-17	N/A	unknown function
eggNOG-mapper	UHGV-1385483_33	621372.ACIH01000081_gene2311	67.8	0.000000000000164	N/A	N/A
PHROG	UHGV-1385483_34	phrog_88	78.7	7.2e-23	major tail protein	tail
UniRef90	UHGV-1385483_34	UniRef90_UPI000785A720	77.4	0.000000000000182	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1385483_34	66692.ABC1339	62.0	0.00000000368	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1385483_34	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-1385483_34	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1385483_34	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1385483_35	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-1385483_36	UniRef90_A0A6B9STC9	66.2	0.0000000000802	Tail completion protein	N/A
structural_annotation	UHGV-1385483_36	TIGR01725	N/A	N/A	N/A	N/A
UniRef90	UHGV-1385483_37	UniRef90_A0A6B9SS91	131.0	2.45e-37	Head-tail connector	N/A
eggNOG-mapper	UHGV-1385483_37	1536774.H70357_10645	68.9	0.00000000000015	N/A	N/A
Pfam	UHGV-1385483_37	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-1385483_37	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-1385483_38	UniRef90_UPI001D07D95D	102.0	1.62e-26	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1385483_38	768704.Desmer_4461	64.3	0.00000000000262	N/A	N/A
structural_annotation	UHGV-1385483_38	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1385483_39	phrog_10	67.4	2.4e-19	major head protein	head and packaging
UniRef90	UHGV-1385483_39	UniRef90_A0A1C5W5F9	263.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-1385483_39	742740.HMPREF9474_04304	305.0	0	Phage capsid family	N/A
Pfam	UHGV-1385483_39	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1385483_39	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1385483_39	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1385483_40	K06904	100.9	1.6e-29	N/A	N/A
PHROG	UHGV-1385483_40	phrog_80	109.0	5.9e-32	head maturation protease	head and packaging
UniRef90	UHGV-1385483_40	UniRef90_A0A843GD97	182.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1385483_40	642492.Clole_1857	129.0	8.54e-35	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-1385483_40	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-1385483_40	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1385483_40	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1385483_41	phrog_12	162.1	0	portal protein	head and packaging
UniRef90	UHGV-1385483_41	UniRef90_A0A6B9SS26	468.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1385483_41	642492.Clole_1856	300.0	0	Portal protein	N/A
Pfam	UHGV-1385483_41	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1385483_41	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1385483_41	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1385483_42	phrog_9	282.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1385483_42	UniRef90_A0A6B9SRL5	768.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1385483_42	1211817.CCAT010000007_gene1040	476.0	0	Terminase	N/A
Pfam	UHGV-1385483_42	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1385483_42	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1385483_42	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1385483_42	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1385483_43	phrog_1066	47.3	0.00000000000029	N/A	unknown function
eggNOG-mapper	UHGV-1385483_43	1211817.CCAT010000007_gene1041	52.0	0.000000433	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1385483	Yes	30,076	41	87	1
UHGV-0101677	No	30,076	41	87	1
UHGV-2132831	No	29,944	41	87	1