vOTU vOTU-042145

vOTU: vOTU-042145

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-042145
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger sp900540775
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00079 → vGENUS-05182 → vOTU-042145
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2162345
Biosample ID	SAMEA3449257
Genome length (bp)	26,936 bps
CheckV completeness	66.09% (Medium-quality)
CDS count	39
CDS density	93.69%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	182	Host agreement	92.86
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger sp900540775	Total connections	4	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 66.09)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2162345_1	K06131	385.5	0	clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]	N/A
PHROG	UHGV-2162345_1	phrog_17878	256.1	0	N/A	unknown function
UniRef90	UHGV-2162345_1	UniRef90_UPI001C01ECE1	1013.0	0	cardiolipin synthase	N/A
eggNOG-mapper	UHGV-2162345_1	411471.SUBVAR_06516	811.0	0	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol	N/A
PADLOC	UHGV-2162345_1	DrmC_00030	44.0	0.0000000000000049	DrmC	DISARM
Pfam	UHGV-2162345_1	PF13396	N/A	N/A	Phospholipase_D-nuclease N-terminal	PLDc_N
Pfam	UHGV-2162345_1	PF13091	N/A	N/A	PLD-like domain	PLDc_2
NCBIFam	UHGV-2162345_1	TIGR04265.1	N/A	N/A	cardiolipin synthase	N/A
COG	UHGV-2162345_1	COG1502	N/A	N/A	Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase	N/A
KOfam	UHGV-2162345_2	K17734	79.1	2.1e-23	aprX; serine protease AprX [EC:3.4.21.-]	N/A
PHROG	UHGV-2162345_2	phrog_3677	40.2	0.00000000001	protease	other
UniRef90	UHGV-2162345_2	UniRef90_UPI001C025AC7	692.0	0	S8 family serine peptidase	N/A
eggNOG-mapper	UHGV-2162345_2	693746.OBV_03580	228.0	0	Subtilase family	N/A
Pfam	UHGV-2162345_2	PF00082	N/A	N/A	Subtilase family	Peptidase_S8
COG	UHGV-2162345_2	COG1404	N/A	N/A	Serine protease, subtilisin family	N/A
structural_annotation	UHGV-2162345_3	PF08461,TIGR02719,COG1695	N/A	N/A	N/A	N/A
PHROG	UHGV-2162345_4	phrog_36	66.0	6.9e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-2162345_4	UniRef90_A0A353BRJ1	196.0	0	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-2162345_4	411471.SUBVAR_05843	95.9	1.96e-23	N/A	N/A
Pfam	UHGV-2162345_4	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-2162345_4	PF04545,MF_00674,NF005248,COG1595	N/A	N/A	N/A	N/A
KOfam	UHGV-2162345_6	K06909	401.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2162345_6	phrog_3717	156.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-2162345_6	UniRef90_A0A1T4X5Q2	671.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-2162345_6	411471.SUBVAR_06507	648.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-2162345_6	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-2162345_6	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-2162345_6	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2162345_6	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2162345_6	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2162345_7	phrog_64	178.8	0	portal protein	head and packaging
UniRef90	UHGV-2162345_7	UniRef90_UPI0018A8A301	601.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-2162345_7	673376.F2VHW1_9CAUD	208.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-2162345_7	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-2162345_7	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-2162345_8	phrog_8680	200.1	0	N/A	unknown function
UniRef90	UHGV-2162345_8	UniRef90_A0A844D688	300.0	0	N/A	N/A
eggNOG-mapper	UHGV-2162345_8	411470.RUMGNA_02208	187.0	0	N/A	N/A
Pfam	UHGV-2162345_8	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-2162345_8	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-2162345_10	phrog_595	118.5	6.9e-35	head maturation protease	head and packaging
UniRef90	UHGV-2162345_10	UniRef90_A0A3A9EHQ6	412.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-2162345_10	1504822.CCNO01000013_gene286	179.0	0	cell adhesion	N/A
Pfam	UHGV-2162345_10	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-2162345_10	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-2162345_10	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2162345_10	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-2162345_11	phrog_5	74.0	2.7e-21	tail completion or Neck1 protein	connector
UniRef90	UHGV-2162345_11	UniRef90_A0A7X5E1T2	169.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-2162345_11	1280685.AUKC01000004_gene1630	109.0	8.53e-29	N/A	N/A
Pfam	UHGV-2162345_11	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-2162345_11	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-2162345_11	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-2162345_12	phrog_478	127.5	5.3e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-2162345_12	UniRef90_A0A373Q857	165.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-2162345_12	1111121.HMPREF1247_0834	95.5	1.7e-23	N/A	N/A
PHROG	UHGV-2162345_13	phrog_194	51.5	0.000000000000018	head scaffolding protein	head and packaging
UniRef90	UHGV-2162345_13	UniRef90_A0A6B9SU02	100.0	6.32e-23	Fibronectin autolysin	N/A
structural_annotation	UHGV-2162345_13	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-2162345_14	phrog_544	295.0	0	major head protein	head and packaging
UniRef90	UHGV-2162345_14	UniRef90_UPI0019576143	394.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-2162345_14	411471.SUBVAR_06940	384.0	0	N/A	N/A
NCBIFam	UHGV-2162345_14	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-2162345_14	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2162345_16	phrog_17977	87.7	8.4e-26	N/A	unknown function
UniRef90	UHGV-2162345_16	UniRef90_A0A285PT57	92.0	1.03e-21	Phage head-tail joining protein	N/A
structural_annotation	UHGV-2162345_16	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2162345_17	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-2162345_18	phrog_885	74.4	1.2e-21	major tail protein	tail
UniRef90	UHGV-2162345_18	UniRef90_A0A843J9F0	188.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-2162345_18	1504822.CCNO01000012_gene492	218.0	0	N/A	N/A
structural_annotation	UHGV-2162345_18	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2162345_19	phrog_18646	52.3	0.0000000000000093	N/A	unknown function
PHROG	UHGV-2162345_21	phrog_6900	227.4	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-2162345_21	1437608.BBIA_2554	295.0	0	phage tail tape measure protein	N/A
COG	UHGV-2162345_21	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2162345_21	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-2162345_22	phrog_33	67.5	3.3e-19	distal tail protein Dit	tail
UniRef90	UHGV-2162345_22	UniRef90_A0A2X2UUQ3	132.0	2.51e-34	Phage putative tail component	N/A
eggNOG-mapper	UHGV-2162345_22	1582149.A0A0A8WHP7_9CAUD	108.0	7.17e-26	Phage tail protein	N/A
structural_annotation	UHGV-2162345_22	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2162345_23	phrog_1067	378.9	0	minor head protein	head and packaging
UniRef90	UHGV-2162345_23	UniRef90_A0A413DNC1	499.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-2162345_23	1160721.RBI_I01574	382.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-2162345_23	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-2162345_23	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-2162345_23	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2162345_23	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-2162345_24	UniRef90_UPI000C79F998	75.9	0.0000000000206	H-type lectin domain-containing protein	N/A
structural_annotation	UHGV-2162345_24	PF10651,NF041074	N/A	N/A	N/A	N/A
PHROG	UHGV-2162345_25	phrog_24267	59.8	5e-17	N/A	unknown function
UniRef90	UHGV-2162345_25	UniRef90_R5LPM8	59.3	0.000000016	Putative truncated prophage LambdaSa1 minor structural protein	N/A
eggNOG-mapper	UHGV-2162345_25	500635.MITSMUL_03163	72.4	0.000000000000861	Membrane	N/A
COG	UHGV-2162345_25	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-2162345_25	COG4675	N/A	N/A	N/A	N/A
KOfam	UHGV-2162345_26	K07273	132.0	6.8e-39	acm; lysozyme	N/A
PHROG	UHGV-2162345_26	phrog_291	107.5	1.9e-31	endolysin	lysis
UniRef90	UHGV-2162345_26	UniRef90_A0A1Q6T343	410.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-2162345_26	1408322.JHYK01000015_gene1912	128.0	5.58e-30	Glycosyl hydrolase, family 25	N/A
Pfam	UHGV-2162345_26	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-2162345_26	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-2162345_26	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-2162345_26	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2162345_27	33035.JPJF01000090_gene94	70.1	0.0000000000000234	N/A	N/A
PHROG	UHGV-2162345_28	phrog_1129	81.7	4.7e-24	holin	lysis
UniRef90	UHGV-2162345_28	UniRef90_UPI00051B7422	95.9	8.14e-24	phage holin family protein	N/A
eggNOG-mapper	UHGV-2162345_28	411460.RUMTOR_01325	92.0	4.52e-23	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-2162345_28	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-2162345_28	PF16079	N/A	N/A	N/A	N/A
Pfam	UHGV-2162345_29	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
structural_annotation	UHGV-2162345_29	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2162345_30	78345.BMERY_0692	82.8	5.38e-19	N/A	N/A
structural_annotation	UHGV-2162345_30	PF07825,NF040990,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-2162345_32	phrog_3754	93.6	2e-27	N/A	unknown function
eggNOG-mapper	UHGV-2162345_32	476272.RUMHYD_01764	144.0	8.32371e-43	N/A	N/A
PHROG	UHGV-2162345_33	phrog_21718	109.3	2.8e-32	N/A	unknown function
eggNOG-mapper	UHGV-2162345_33	397290.C810_05210	84.7	1.77e-18	N/A	N/A
PHROG	UHGV-2162345_34	phrog_22984	73.4	5e-23	N/A	unknown function
PHROG	UHGV-2162345_35	phrog_16490	181.1	0	N/A	unknown function
eggNOG-mapper	UHGV-2162345_35	1408437.JNJN01000043_gene803	77.0	0.0000000000000556	N/A	N/A
PHROG	UHGV-2162345_36	phrog_20016	193.9	0	N/A	unknown function
UniRef90	UHGV-2162345_36	UniRef90_A0A285PT46	195.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-2162345_36	1226322.HMPREF1545_00077	174.0	0	N/A	N/A
structural_annotation	UHGV-2162345_37	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2162345_38	1226322.HMPREF1545_00079	69.3	0.000000000000114	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2162345	Yes	26,936	54	66	1
UHGV-0094284	No	22,237	52	55	1