vOTU vOTU-042363

vOTU: vOTU-042363

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-042363
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00239 → vGENUS-01438 → vOTU-042363
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0010217
Biosample ID	SAMEA4969189
Genome length (bp)	21,098 bps
CheckV completeness	86.38% (Medium-quality)
CDS count	32
CDS density	90.48%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	1724	Host agreement	82.37
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	66	Host agreement	89.39

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 86.38)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0010217_3	phrog_18108	72.7	4.2e-21	N/A	unknown function
structural_annotation	UHGV-0010217_3	PF07443	N/A	N/A	N/A	N/A
KOfam	UHGV-0010217_4	K06400	260.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0010217_4	phrog_95	264.1	0	integrase	integration and excision
UniRef90	UHGV-0010217_4	UniRef90_UPI001E5635E3	257.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0010217_4	1157490.EL26_02935	197.0	0	Recombinase	N/A
Pfam	UHGV-0010217_4	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0010217_4	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0010217_4	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0010217_4	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0010217_5	phrog_443	57.1	4.6e-16	holin	lysis
UniRef90	UHGV-0010217_5	UniRef90_R6MWB0	103.0	1.5e-27	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0010217_5	1298920.KI911353_gene2669	86.7	8.66e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0010217_5	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0010217_5	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0010217_6	phrog_1863	40.7	0.0000000000064	N/A	unknown function
UniRef90	UHGV-0010217_6	UniRef90_UPI001E345E1F	61.6	0.000000000133	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0010217_6	1226322.HMPREF1545_04027	63.5	0.00000000000343	N/A	N/A
KOfam	UHGV-0010217_7	K01447	117.8	1.1e-34	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0010217_7	phrog_833	187.6	0	endolysin	lysis
UniRef90	UHGV-0010217_7	UniRef90_R6MSP5	640.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0010217_7	428125.CLOLEP_01782	185.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0010217_7	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0010217_7	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0010217_7	PF01510,PF01471,MF_04111,NF008758,COG5632,COG3409	N/A	N/A	N/A	N/A
UniRef90	UHGV-0010217_9	UniRef90_A0A1C6HHE5	124.0	2.59e-29	BppU_N domain-containing protein	N/A
structural_annotation	UHGV-0010217_9	PF10651,PF01664	N/A	N/A	N/A	N/A
PHROG	UHGV-0010217_10	phrog_1067	120.4	1.4e-35	minor head protein	head and packaging
UniRef90	UHGV-0010217_10	UniRef90_A0A348ZBV6	206.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0010217_10	1160721.RBI_I01574	122.0	1.97e-27	Prophage endopeptidase tail	N/A
Pfam	UHGV-0010217_10	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0010217_10	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0010217_10	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0010217_10	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0010217_11	phrog_33	82.2	9.2e-24	distal tail protein Dit	tail
UniRef90	UHGV-0010217_11	UniRef90_UPI00189E4294	85.5	2.02e-16	phage tail family protein	N/A
eggNOG-mapper	UHGV-0010217_11	1160721.RBI_I01575	85.9	2.39e-17	Phage tail protein	N/A
COG	UHGV-0010217_11	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0010217_11	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0010217_12	phrog_23464	252.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0010217_12	665950.HMPREF1025_02660	182.0	1.4013e-45	phage tail tape measure protein	N/A
COG	UHGV-0010217_12	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0010217_12	COG3941	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0010217_14	272562.CA_C0058	48.9	0.00000748	N/A	N/A
PHROG	UHGV-0010217_15	phrog_885	134.3	6.6e-40	major tail protein	tail
UniRef90	UHGV-0010217_15	UniRef90_A0A101Y2E4	160.0	4.2039e-45	Big_5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0010217_15	1321814.HMPREF9089_00935	176.0	0	N/A	N/A
structural_annotation	UHGV-0010217_15	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0010217_16	PF12691	N/A	N/A	N/A	N/A
UniRef90	UHGV-0010217_17	UniRef90_UPI001A9B6FBF	163.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0010217_17	1414720.CBYM010000040_gene1650	130.0	8.96e-37	N/A	N/A
Pfam	UHGV-0010217_17	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0010217_17	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0010217_18	phrog_1951	88.7	3.7e-26	head-tail adaptor	connector
UniRef90	UHGV-0010217_18	UniRef90_A0A374MZF9	153.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0010217_18	768704.Desmer_4460	64.7	0.00000000000409	head-tail adaptor	N/A
NCBIFam	UHGV-0010217_18	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0010217_18	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0010217_18	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0010217_19	phrog_5223	60.7	1.5e-17	neck protein	connector
UniRef90	UHGV-0010217_19	UniRef90_UPI0019613678	59.3	0.00000000481	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0010217_19	931626.Awo_c31020	54.7	0.0000000181	N/A	N/A
structural_annotation	UHGV-0010217_19	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0010217_20	phrog_10	146.9	1.59748e-43	major head protein	head and packaging
UniRef90	UHGV-0010217_20	UniRef90_A0A374N9V9	716.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0010217_20	1280689.AUJC01000011_gene1521	329.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0010217_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0010217_20	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0010217_20	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0010217_20	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0010217_21	K01358	121.0	1.3e-35	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0010217_21	phrog_94	184.8	0	head maturation protease	head and packaging
UniRef90	UHGV-0010217_21	UniRef90_A0A374NBM3	378.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0010217_21	1203606.HMPREF1526_00979	179.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0010217_21	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0010217_21	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0010217_21	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0010217_22	phrog_12	174.7	0	portal protein	head and packaging
UniRef90	UHGV-0010217_22	UniRef90_A0A374NAE1	663.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0010217_22	626523.GCWU000342_01027	386.0	0	Portal protein	N/A
Pfam	UHGV-0010217_22	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0010217_22	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0010217_22	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0010217_23	phrog_9	395.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0010217_23	UniRef90_A0A374NB45	894.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0010217_23	1203606.HMPREF1526_00981	719.0	0	Terminase	N/A
Pfam	UHGV-0010217_23	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0010217_23	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0010217_23	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0010217_23	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0010217_24	phrog_1066	115.5	2.3e-34	N/A	unknown function
eggNOG-mapper	UHGV-0010217_24	1203606.HMPREF1526_00982	98.6	3.56e-25	N/A	N/A
PHROG	UHGV-0010217_25	phrog_119	51.9	0.0000000000000098	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010217_25	UniRef90_A0A374N9T6	162.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0010217_25	1235793.C809_01915	124.0	6.15e-35	HNH endonuclease	N/A
Pfam	UHGV-0010217_25	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0010217_25	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0010217_26	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0010217_27	phrog_3584	151.1	5.60519e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0010217_27	1235800.C819_00515	88.2	5.09e-18	N/A	N/A
structural_annotation	UHGV-0010217_27	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0010217_29	phrog_824	146.4	7.14662e-44	N/A	unknown function
UniRef90	UHGV-0010217_29	UniRef90_A0A3D3D6C6	201.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0010217_29	397288.C806_00096	154.0	0	VRR_NUC	N/A
Pfam	UHGV-0010217_29	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0010217_29	PF08774	N/A	N/A	N/A	N/A
UniRef90	UHGV-0010217_31	UniRef90_K1S6I0	194.0	0	Exonuclease RNase T and DNA polymerase III (Fragment)	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0010217	Yes	21,098	40	86	1
UHGV-0012848	No	19,985	40	82	1