vOTU vOTU-042369

vOTU: vOTU-042369

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-042369
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00062 → vSUBFAM-00170 → vGENUS-00088 → vOTU-042369
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0013161
Biosample ID	N/A
Genome length (bp)	38,344 bps
CheckV completeness	85.29% (Medium-quality)
CDS count	61
CDS density	92.49%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella	Total connections	216	Host agreement	98.61
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella sp003436425	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 85.29)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0013161_3	PF03425,NF033675	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0013161_6	1232452.BAIB02000007_gene1610	67.8	0.00000000182	N/A	N/A
structural_annotation	UHGV-0013161_7	PF16407,TIGR02657,COG3794	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013161_8	PF05895,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013161_9	PF10651,COG5513	N/A	N/A	N/A	N/A
PHROG	UHGV-0013161_10	phrog_1067	41.9	1.2e-20	minor head protein	head and packaging
eggNOG-mapper	UHGV-0013161_10	1232446.BAIE02000002_gene836	60.8	0.000000739	Phage minor structural protein	N/A
NCBIFam	UHGV-0013161_10	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0013161_10	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0013161_10	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0013161_11	phrog_33	52.9	0.0000000000000083	distal tail protein Dit	tail
UniRef90	UHGV-0013161_11	UniRef90_UPI0004D3F0A3	57.0	0.00000443	phage tail family protein	N/A
Pfam	UHGV-0013161_11	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0013161_11	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0013161_11	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0013161_11	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0013161_12	K10402	41.5	0.0000000000037	KIF20; kinesin family member 20	N/A
PHROG	UHGV-0013161_12	phrog_13339	328.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0013161_12	UniRef90_A0A395WD11	1890.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0013161_12	411490.ANACAC_00710	252.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0013161_12	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0013161_12	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0013161_12	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0013161_12	PF10145,TIGR01760,TIGR02971,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0013161_13	phrog_709	45.0	0.0000000000016	N/A	unknown function
structural_annotation	UHGV-0013161_13	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0013161_14	phrog_88	148.7	2.66247e-44	major tail protein	tail
UniRef90	UHGV-0013161_14	UniRef90_A0A395WA58	379.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0013161_14	1111134.HMPREF1253_0377	159.0	0	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0013161_14	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0013161_14	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013161_15	UniRef90_A0A374RUJ8	136.0	9.55e-39	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0013161_15	86416.Clopa_0344	59.3	0.0000000023	N/A	N/A
Pfam	UHGV-0013161_15	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0013161_15	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013161_16	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-0013161_17	phrog_1951	71.9	5.8e-21	head-tail adaptor	connector
UniRef90	UHGV-0013161_17	UniRef90_A0A395WC07	221.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0013161_17	1243664.CAVL020000054_gene3020	60.1	0.000000000276	head-tail adaptor	N/A
NCBIFam	UHGV-0013161_17	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0013161_17	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0013161_17	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0013161_18	phrog_5223	46.9	0.00000000000034	neck protein	connector
UniRef90	UHGV-0013161_18	UniRef90_A0A374RXD1	77.8	1.02e-16	DNA-packaging protein	N/A
structural_annotation	UHGV-0013161_18	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0013161_19	phrog_10	80.2	2.6e-23	major head protein	head and packaging
UniRef90	UHGV-0013161_19	UniRef90_A0A395WF70	800.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0013161_19	1536774.H70357_10630	171.0	1.4013e-45	Phage capsid family	N/A
Pfam	UHGV-0013161_19	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0013161_19	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0013161_19	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0013161_19	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0013161_20	K06904	88.2	1e-25	N/A	N/A
PHROG	UHGV-0013161_20	phrog_80	117.5	1.6e-34	head maturation protease	head and packaging
UniRef90	UHGV-0013161_20	UniRef90_A0A413UET6	352.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0013161_20	411470.RUMGNA_02064	174.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0013161_20	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0013161_20	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0013161_20	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0013161_20	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0013161_21	phrog_12	100.1	1.5e-29	portal protein	head and packaging
UniRef90	UHGV-0013161_21	UniRef90_A0A395W9X2	806.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0013161_21	1203606.HMPREF1526_01337	285.0	0	Portal protein	N/A
Pfam	UHGV-0013161_21	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0013161_21	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0013161_21	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0013161_22	phrog_9	310.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0013161_22	UniRef90_A0A395WD03	1119.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0013161_22	742740.HMPREF9474_04307	547.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-0013161_22	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0013161_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0013161_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0013161_22	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0013161_23	phrog_361	74.5	1.1e-21	terminase small subunit	head and packaging
UniRef90	UHGV-0013161_23	UniRef90_A0A1C6H6I9	80.1	6.43e-17	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0013161_23	1329516.JPST01000017_gene431	50.1	0.00000474	Phage terminase, small subunit	N/A
Pfam	UHGV-0013161_23	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0013161_23	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0013161_23	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0013161_24	phrog_119	58.4	1.1e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013161_24	UniRef90_A0A395WA48	261.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0013161_24	1211814.CAPG01000074_gene3460	66.2	0.00000000000191	HNH endonuclease	N/A
Pfam	UHGV-0013161_24	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0013161_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0013161_29	1403948.Q618_VCMC00003G0140	100.0	4.09e-24	N/A	N/A
COG	UHGV-0013161_30	COG4842	N/A	N/A	Secreted virulence factor YukE/EsxA, WXG100 family	N/A
PHROG	UHGV-0013161_32	phrog_88	53.2	0.0000000000000024	major tail protein	tail
PHROG	UHGV-0013161_33	phrog_2316	44.3	0.0000000000029	N/A	unknown function
UniRef90	UHGV-0013161_33	UniRef90_A0A3E4YBW5	122.0	1.87e-34	N/A	N/A
eggNOG-mapper	UHGV-0013161_33	1280676.AUJO01000024_gene3262	64.3	0.00000000000324	N/A	N/A
structural_annotation	UHGV-0013161_33	PF16475,MF_00436,NF033216	N/A	N/A	N/A	N/A
PHROG	UHGV-0013161_34	phrog_478	106.8	1.2e-31	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0013161_34	UniRef90_A0A0J8Z1B9	177.0	0	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-0013161_34	272623.L62008	80.1	1.92e-17	N/A	N/A
UniRef90	UHGV-0013161_35	UniRef90_A0A413UEX6	280.0	0	N/A	N/A
structural_annotation	UHGV-0013161_35	PF07374,NF008895	N/A	N/A	N/A	N/A
PHROG	UHGV-0013161_40	phrog_15198	46.0	0.00000000000032	N/A	unknown function
UniRef90	UHGV-0013161_40	UniRef90_A0A395WBY6	160.0	0	N/A	N/A
Pfam	UHGV-0013161_40	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0013161_47	PF17888	N/A	N/A	N/A	N/A
PHROG	UHGV-0013161_48	phrog_173	104.9	7.1e-31	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013161_48	UniRef90_UPI001C25836D	216.0	0	dUTPase	N/A
eggNOG-mapper	UHGV-0013161_48	221109.22777829	68.6	0.00000000000327	dUTPase	N/A
Pfam	UHGV-0013161_48	PF08761	N/A	N/A	dUTPase	dUTPase_2
COG	UHGV-0013161_48	COG4508	N/A	N/A	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	N/A
structural_annotation	UHGV-0013161_48	PF08761,COG4508	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013161_49	PF13392,PF07453	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013161_52	UniRef90_R6T064	79.0	0.0000000000000151	NUMOD4 domain-containing protein	N/A
structural_annotation	UHGV-0013161_52	PF13392,PF07453	N/A	N/A	N/A	N/A
KOfam	UHGV-0013161_53	K02315	121.9	6.3e-36	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0013161_53	phrog_50	106.1	3.8e-31	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013161_53	UniRef90_A0A395WER8	535.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-0013161_53	1232446.BAIE02000011_gene1611	132.0	1.24e-34	N/A	N/A
Pfam	UHGV-0013161_53	PF00308	N/A	N/A	Bacterial dnaA protein	Bac_DnaA
COG	UHGV-0013161_53	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0013161_53	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0013161_54	phrog_428	143.3	1.80067e-42	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013161_54	UniRef90_A0A395WBX6	401.0	0	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0013161_54	279808.SH2379	154.0	3.40516e-43	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-0013161_54	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0013161_54	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0013161_54	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0013161_54	PF09524,PF08679,MF_01909,TIGR02220,NF040939,COG1675	N/A	N/A	N/A	N/A
KOfam	UHGV-0013161_56	K04763	136.1	3.4e-40	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0013161_56	phrog_1	119.6	3e-35	integrase	integration and excision
UniRef90	UHGV-0013161_56	UniRef90_A0A395W9T7	578.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0013161_56	908340.HMPREF9406_2589	231.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0013161_56	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0013161_56	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0013161_56	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013161_58	UniRef90_UPI001D14AAA4	73.9	0.00000000000000326	N/A	N/A
KOfam	UHGV-0013161_61	K22300	64.1	2.8e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0013161_61	phrog_2967	59.5	5.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0013161_61	UniRef90_A0A395WA05	191.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0013161_61	999413.HMPREF1094_02045	99.8	4.05e-25	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0013161_61	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0013161_61	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0013161_61	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0013161	Yes	38,344	33	85	1
UHGV-0011657	No	37,435	33	83	1
UHGV-0010378	No	35,460	33	79	1