vOTU vOTU-042466

vOTU: vOTU-042466

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-042466
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium_X → Clostridium_X cadaveris
Taxonomy (UHGV)	vFAM-00114 → vOTU-042466
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium_X → Clostridium_X cadaveris
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0134087
Biosample ID	SAMN06051246
Genome length (bp)	40,945 bps
CheckV completeness	72.87% (Medium-quality)
CDS count	58
CDS density	90.92%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium_X → Clostridium_X cadaveris	Total connections	7	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium_X → Clostridium_X cadaveris	Total connections	5	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 72.87)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0134087_1	1280692.AUJL01000005_gene1708	192.0	0	N/A	N/A
structural_annotation	UHGV-0134087_1	PF08948,MF_01537,TIGR03711	N/A	N/A	N/A	N/A
KOfam	UHGV-0134087_2	K14059	69.2	9.2e-20	int; integrase	N/A
PHROG	UHGV-0134087_2	phrog_1	54.8	0.000000000000002	integrase	integration and excision
UniRef90	UHGV-0134087_2	UniRef90_A0A1I2JED3	229.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-0134087_2	1280692.AUJL01000005_gene1707	229.0	0	Belongs to the 'phage' integrase family	N/A
COG	UHGV-0134087_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
PHROG	UHGV-0134087_3	phrog_5156	344.1	0	N/A	unknown function
UniRef90	UHGV-0134087_3	UniRef90_A0A1C6H0N7	912.0	0	Type IV conjugative transfer system coupling protein TraD	N/A
eggNOG-mapper	UHGV-0134087_3	1211817.CCAT010000049_gene2453	837.0	0	COG0433 Predicted ATPase	N/A
Pfam	UHGV-0134087_3	PF10412	N/A	N/A	Type IV secretion-system coupling protein DNA-binding domain	TrwB_AAD_bind
COG	UHGV-0134087_3	COG0433	N/A	N/A	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	N/A
structural_annotation	UHGV-0134087_3	PF02534,NF041017,COG3451	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0134087_4	1415774.U728_688	75.1	5.33e-17	N/A	N/A
AcrCatalog	UHGV-0134087_4	cluster_137178	42.4	0.0000000136	NA	N/A
UniRef90	UHGV-0134087_5	UniRef90_A5I485	119.0	3.57e-32	Putative membrane protein	N/A
eggNOG-mapper	UHGV-0134087_5	536232.CLM_2490	120.0	2.98e-33	N/A	N/A
PHROG	UHGV-0134087_7	phrog_4223	48.2	0.00000000000022	N/A	unknown function
KOfam	UHGV-0134087_8	K18640	146.6	2.39622e-43	parM, stbA; plasmid segregation protein ParM	N/A
PHROG	UHGV-0134087_8	phrog_691	143.9	9.69699e-43	partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0134087_8	UniRef90_A0A316M7E8	531.0	0	ALP_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0134087_8	1415774.U728_798	265.0	0	StbA protein	N/A
Pfam	UHGV-0134087_8	PF17989	N/A	N/A	Actin like proteins N terminal domain	ALP_N
Pfam	UHGV-0134087_8	PF21522	N/A	N/A	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
COG	UHGV-0134087_8	COG0849	N/A	N/A	Cell division ATPase FtsA	N/A
structural_annotation	UHGV-0134087_8	PF06723,MF_02207,NF010498,COG1077	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0134087_11	1151292.QEW_4408	62.0	0.0000000000268	N/A	N/A
eggNOG-mapper	UHGV-0134087_12	63737.Npun_DF032	79.0	0.0000000000000146	N/A	N/A
KOfam	UHGV-0134087_14	K11062	170.1	0	entD; probable enterotoxin D	N/A
PHROG	UHGV-0134087_14	phrog_670	166.6	0	endolysin	lysis
UniRef90	UHGV-0134087_14	UniRef90_UPI00145980E3	506.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0134087_14	1280692.AUJL01000002_gene2569	233.0	0	PFAM NLP P60 protein	N/A
Pfam	UHGV-0134087_14	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0134087_14	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0134087_14	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0134087_14	PF01510,PF01471,MF_04111,NF008758,TIGR02869,COG5632,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0134087_15	phrog_199	104.8	8.1e-31	holin	lysis
UniRef90	UHGV-0134087_15	UniRef90_UPI0014013480	224.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0134087_15	536233.CLO_1583	220.0	0	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0134087_15	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0134087_15	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0134087_15	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
KOfam	UHGV-0134087_18	K18353	48.8	0.000000000000079	vanJ; vancomycin resistance protein VanJ	N/A
PHROG	UHGV-0134087_18	phrog_6782	71.4	1.1e-20	tail fiber protein	tail
eggNOG-mapper	UHGV-0134087_18	536233.CLO_0899	122.0	2.68e-25	N/A	N/A
Pfam	UHGV-0134087_18	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-0134087_18	PF03372	N/A	N/A	Endonuclease/Exonuclease/phosphatase family	Exo_endo_phos
PHROG	UHGV-0134087_19	phrog_6130	88.0	6e-26	N/A	unknown function
eggNOG-mapper	UHGV-0134087_19	1347392.CCEZ01000005_gene1247	91.3	3.14e-23	N/A	N/A
PHROG	UHGV-0134087_20	phrog_7043	398.8	0	tail protein	tail
UniRef90	UHGV-0134087_20	UniRef90_D9SVZ6	590.0	0	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-0134087_20	573061.Clocel_3531	590.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0134087_20	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0134087_20	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0134087_20	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0134087_20	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0134087_21	phrog_33	64.9	2.2e-18	distal tail protein Dit	tail
UniRef90	UHGV-0134087_21	UniRef90_A0A1C6KY20	213.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0134087_21	1499683.CCFF01000005_gene79	266.0	0	tail component	N/A
NCBIFam	UHGV-0134087_21	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0134087_21	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0134087_21	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0134087_22	phrog_1533	690.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0134087_22	UniRef90_A0A316M2G4	1553.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0134087_22	1443125.Z962_p0064	422.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-0134087_22	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0134087_22	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0134087_22	COG1340	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0134087_22	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0134087_23	phrog_6780	71.7	1e-20	N/A	unknown function
UniRef90	UHGV-0134087_23	UniRef90_A0A316M3F7	214.0	0	N/A	N/A
eggNOG-mapper	UHGV-0134087_23	1265845.PWEIH_11590	65.1	0.00000000000578	N/A	N/A
Pfam	UHGV-0134087_23	PF13273	N/A	N/A	N/A	DUF4064
PHROG	UHGV-0134087_24	phrog_6280	122.9	1.7e-36	N/A	unknown function
UniRef90	UHGV-0134087_24	UniRef90_UPI001AA892DF	100.0	1.7e-24	esterase	N/A
eggNOG-mapper	UHGV-0134087_24	1443125.Z962_p0061	170.0	0	N/A	N/A
PHROG	UHGV-0134087_25	phrog_6686	161.8	0	tail tube protein	tail
UniRef90	UHGV-0134087_25	UniRef90_A0A1H0N6N2	229.0	0	Intein N-terminal splicing region	N/A
eggNOG-mapper	UHGV-0134087_25	59241.E7DNB3_BPDP1	116.0	3.21e-29	N/A	N/A
structural_annotation	UHGV-0134087_25	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0134087_26	phrog_7585	109.7	2.2e-32	N/A	unknown function
eggNOG-mapper	UHGV-0134087_26	1121342.AUCO01000012_gene1689	56.6	0.0000000156	N/A	N/A
structural_annotation	UHGV-0134087_26	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0134087_27	UniRef90_UPI001E31310C	78.6	1.96e-16	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0134087_27	1443125.Z962_p0058	176.0	0	N/A	N/A
structural_annotation	UHGV-0134087_27	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0134087_28	phrog_38382	126.1	1.3e-37	N/A	unknown function
PHROG	UHGV-0134087_29	phrog_4020	123.0	9.3e-37	N/A	unknown function
eggNOG-mapper	UHGV-0134087_29	1345695.CLSA_c35540	103.0	2.92e-27	N/A	N/A
PHROG	UHGV-0134087_30	phrog_29	190.0	0	major head protein	head and packaging
UniRef90	UHGV-0134087_30	UniRef90_A0A316M099	506.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0134087_30	1345695.CLSA_c35550	421.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0134087_30	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0134087_30	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0134087_31	phrog_909	85.8	4.2e-25	major head protein	head and packaging
eggNOG-mapper	UHGV-0134087_31	536233.CLO_1842	143.0	1.98984e-42	N/A	N/A
PHROG	UHGV-0134087_32	phrog_194	135.7	3.5e-40	head scaffolding protein	head and packaging
UniRef90	UHGV-0134087_32	UniRef90_A0A316M2H1	347.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0134087_32	536232.CLM_2525	214.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0134087_32	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0134087_32	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0134087_34	phrog_1233	111.6	7.1e-33	N/A	unknown function
UniRef90	UHGV-0134087_34	UniRef90_B2TNX0	94.0	4.05e-22	N/A	N/A
eggNOG-mapper	UHGV-0134087_34	1280692.AUJL01000004_gene849	113.0	5.82e-31	N/A	N/A
PHROG	UHGV-0134087_37	phrog_1315	50.7	0.00000000000003	N/A	unknown function
PHROG	UHGV-0134087_38	phrog_1657	265.9	0	head morphogenesis	head and packaging
UniRef90	UHGV-0134087_38	UniRef90_A0A4U9RAJ3	330.0	0	Exonuclease SbcC	N/A
eggNOG-mapper	UHGV-0134087_38	1443125.Z962_p0047	310.0	0	N/A	N/A
COG	UHGV-0134087_38	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
structural_annotation	UHGV-0134087_38	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0134087_39	phrog_64	176.5	0	portal protein	head and packaging
UniRef90	UHGV-0134087_39	UniRef90_UPI001EEB60D4	546.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0134087_39	431943.CKL_3279	551.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0134087_39	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0134087_39	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0134087_40	K06909	345.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0134087_40	phrog_2	128.8	7e-38	terminase large subunit	head and packaging
UniRef90	UHGV-0134087_40	UniRef90_A0A316M3W0	923.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0134087_40	536232.CLM_2529	622.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0134087_40	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0134087_40	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0134087_40	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0134087_40	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0134087_40	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0134087_41	K07474	109.7	5.1e-32	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0134087_41	phrog_2606	294.1	0	terminase small subunit	head and packaging
UniRef90	UHGV-0134087_41	UniRef90_A0A316M0A8	590.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0134087_41	545697.HMPREF0216_02842	273.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0134087_41	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
Pfam	UHGV-0134087_41	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0134087_41	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0134087_41	PF03592,PF10668,NF040601,COG3728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0134087_42	1196322.A370_05723	82.8	3.03e-20	N/A	N/A
PHROG	UHGV-0134087_43	phrog_36	63.2	3.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0134087_43	UniRef90_UPI001E41E4B5	167.0	0	transcriptional regulator	N/A
eggNOG-mapper	UHGV-0134087_43	1443125.Z962_p0040	125.0	5.05e-34	N/A	N/A
structural_annotation	UHGV-0134087_43	PF08281,MF_00245,NF001068,COG2739	N/A	N/A	N/A	N/A
Pfam	UHGV-0134087_44	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
eggNOG-mapper	UHGV-0134087_46	1196322.A370_02064	163.0	0	N/A	N/A
UniRef90	UHGV-0134087_50	UniRef90_A0A316M112	156.0	0	Glutamate racemase	N/A
UniRef90	UHGV-0134087_51	UniRef90_A0A127EFP7	102.0	2.29e-21	SCP domain-containing protein	N/A
Pfam	UHGV-0134087_51	PF00188	N/A	N/A	Cysteine-rich secretory protein family	CAP
PHROG	UHGV-0134087_54	phrog_421	134.9	5.6e-40	N/A	unknown function
UniRef90	UHGV-0134087_54	UniRef90_A0A316M917	460.0	0	N/A	N/A
eggNOG-mapper	UHGV-0134087_54	1280689.AUJC01000013_gene1748	293.0	0	N/A	N/A
Pfam	UHGV-0134087_54	PF10979	N/A	N/A	N/A	DUF2786
COG	UHGV-0134087_54	COG1451	N/A	N/A	UTP pyrophosphatase, metal-dependent hydrolase family	N/A
KOfam	UHGV-0134087_56	K07171	114.3	1.6e-33	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-0134087_56	phrog_1936	112.4	3.8e-33	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0134087_56	UniRef90_A0A316M9X2	207.0	0	mRNA interferase	N/A
eggNOG-mapper	UHGV-0134087_56	332101.JIBU02000003_gene4445	129.0	2.33e-37	Toxic component of a toxin-antitoxin (TA) module	N/A
Pfam	UHGV-0134087_56	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-0134087_56	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-0134087_56	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
PHROG	UHGV-0134087_58	phrog_9628	50.1	0.000000000000032	N/A	unknown function
UniRef90	UHGV-0134087_58	UniRef90_A0A316MRG1	278.0	0	HTH_11 domain-containing protein	N/A
eggNOG-mapper	UHGV-0134087_58	1280689.AUJC01000013_gene1753	55.5	0.0000000828	N/A	N/A
Pfam	UHGV-0134087_58	PF08279	N/A	N/A	HTH domain	HTH_11
dbAPIS	UHGV-0134087_58	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0134087	Yes	40,945	31	73	1
UHGV-0142549	No	18,513	32	33	1