vOTU vOTU-042508

vOTU: vOTU-042508

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-042508
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00089 → vGENUS-01243 → vSUBGEN-08191 → vOTU-042508
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0003465
Biosample ID	SAMEA4766166
Genome length (bp)	34,040 bps
CheckV completeness	100.00% (Complete)
CDS count	43
CDS density	94.51%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	127	Host agreement	92.91
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	266	Host agreement	99.25

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0003465_1	K06400	361.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0003465_1	phrog_95	353.7	0	integrase	integration and excision
UniRef90	UHGV-0003465_1	UniRef90_A0A3D4JJV8	426.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0003465_1	537013.CLOSTMETH_01697	422.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0003465_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0003465_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0003465_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0003465_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0003465_1	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0003465_2	phrog_10292	54.2	5.4e-16	N/A	unknown function
UniRef90	UHGV-0003465_2	UniRef90_R6T9F1	268.0	0	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0003465_2	537013.CLOSTMETH_02269	84.0	6.22e-19	TM2 domain	N/A
Pfam	UHGV-0003465_2	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0003465_2	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-0003465_3	K01356	122.4	5.5e-36	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0003465_3	phrog_4	134.0	1.3e-39	transcriptional repressor	transcription regulation
UniRef90	UHGV-0003465_3	UniRef90_R6T2B0	431.0	0	Peptidase S24-like protein	N/A
eggNOG-mapper	UHGV-0003465_3	246199.CUS_5911	233.0	0	N/A	N/A
Pfam	UHGV-0003465_3	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
Pfam	UHGV-0003465_3	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0003465_3	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0003465_3	PF00717,PF12844,MF_00015,TIGR00498,TIGR03070,COG1974,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0003465_4	UniRef90_R6TEQ2	142.0	2.67648e-43	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0003465_4	246199.CUS_5910	120.0	4.55e-35	N/A	N/A
structural_annotation	UHGV-0003465_4	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0003465_9	phrog_38338	97.5	1.3e-28	N/A	unknown function
UniRef90	UHGV-0003465_9	UniRef90_UPI00137B3A8C	90.1	2.5e-20	Cas9 inhibitor AcrIIA9 family protein	N/A
eggNOG-mapper	UHGV-0003465_9	641112.ACOK01000073_gene2869	84.0	2.36e-19	N/A	N/A
PHROG	UHGV-0003465_10	phrog_8470	194.9	0	N/A	unknown function
UniRef90	UHGV-0003465_10	UniRef90_UPI0019175B9C	305.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0003465_10	641112.ACOK01000073_gene2870	413.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0003465_10	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0003465_10	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0003465_11	phrog_15609	100.2	1.3e-29	N/A	unknown function
UniRef90	UHGV-0003465_11	UniRef90_A0A373SLQ6	501.0	0	N/A	N/A
eggNOG-mapper	UHGV-0003465_11	641112.ACOK01000073_gene2872	97.4	7.22e-21	N/A	N/A
structural_annotation	UHGV-0003465_11	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0003465_12	phrog_253	111.6	5.6e-33	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0003465_12	UniRef90_UPI0019171ADA	118.0	2.72e-30	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0003465_12	881621.LIV_2167	76.3	0.00000000000000427	Siphovirus Gp157	N/A
Pfam	UHGV-0003465_12	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0003465_12	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0003465_13	phrog_2872	246.3	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0003465_13	UniRef90_A0A373VPJ3	398.0	0	ATP-binding protein (Fragment)	N/A
eggNOG-mapper	UHGV-0003465_13	754027.HMPREF9554_00709	219.0	0	N/A	N/A
Pfam	UHGV-0003465_13	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0003465_13	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0003465_14	K19789	323.1	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-0003465_14	phrog_16	277.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0003465_14	UniRef90_A0A356CZA9	887.0	0	Helicase	N/A
eggNOG-mapper	UHGV-0003465_14	1410670.JHXF01000015_gene2270	592.0	0	helicase	N/A
PADLOC	UHGV-0003465_14	mREase_IV_00005	104.5	1.9e-31	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0003465_14	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0003465_14	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0003465_14	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0003465_14	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0003465_15	phrog_5702	80.1	1.3e-23	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0003465_15	UniRef90_A0A373SNE0	205.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0003465_15	1410670.JHXF01000015_gene2271	138.0	4.19997e-41	VRR_NUC	N/A
Pfam	UHGV-0003465_15	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0003465_15	PF03838,MF_00130,NF002585,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-0003465_16	phrog_378	100.1	2.8e-29	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0003465_16	UniRef90_A0A373SL44	376.0	0	N/A	N/A
eggNOG-mapper	UHGV-0003465_16	1423807.BACO01000050_gene1454	80.5	2.22e-16	N/A	N/A
Pfam	UHGV-0003465_16	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-0003465_16	PF05037,NF004948	N/A	N/A	N/A	N/A
KOfam	UHGV-0003465_17	K06919	109.2	2.1e-32	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-0003465_17	phrog_1829	844.4	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0003465_17	UniRef90_A0A356CZ91	1425.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0003465_17	1410670.JHXF01000015_gene2274	856.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0003465_17	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0003465_17	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-0003465_17	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-0003465_17	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0003465_17	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0003465_17	PF08706,PF05272,PF02257,MF_04000,NF011296,COG3378,COG4983	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0003465_19	PF07374,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0003465_21	K06909	420.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0003465_21	phrog_18557	160.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0003465_21	UniRef90_A0A1C6IMR2	1091.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0003465_21	411461.DORFOR_01162	663.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0003465_21	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0003465_21	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0003465_21	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0003465_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0003465_21	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0003465_22	phrog_533	341.7	0	portal protein	head and packaging
UniRef90	UHGV-0003465_22	UniRef90_R6TDI6	867.0	0	Phage portal protein SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0003465_22	1304866.K413DRAFT_3035	439.0	0	N/A	N/A
structural_annotation	UHGV-0003465_22	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0003465_23	phrog_581	336.8	0	minor head protein	head and packaging
UniRef90	UHGV-0003465_23	UniRef90_UPI00189CAB20	800.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0003465_23	658655.HMPREF0988_02563	405.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0003465_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0003465_23	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0003465_23	PF06152,TIGR01641,COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0003465_24	PF00677,NF009627,COG3277	N/A	N/A	N/A	N/A
PHROG	UHGV-0003465_25	phrog_194	98.5	8.4e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-0003465_25	UniRef90_R6U550	370.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0003465_25	742765.HMPREF9457_02126	152.0	3.22299e-44	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0003465_25	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0003465_25	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0003465_26	phrog_544	339.3	0	major head protein	head and packaging
UniRef90	UHGV-0003465_26	UniRef90_R6T873	650.0	0	Major head protein	N/A
eggNOG-mapper	UHGV-0003465_26	936580.HMPREF1516_0718	319.0	0	N/A	N/A
NCBIFam	UHGV-0003465_26	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0003465_26	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0003465_27	phrog_541	64.7	1.5e-18	head-tail adaptor	connector
UniRef90	UHGV-0003465_27	UniRef90_A0A371AQT0	82.4	4.63e-18	N/A	N/A
eggNOG-mapper	UHGV-0003465_27	1304866.K413DRAFT_3039	74.3	0.00000000000000126	N/A	N/A
PHROG	UHGV-0003465_28	phrog_3366	70.7	2e-21	N/A	unknown function
eggNOG-mapper	UHGV-0003465_28	1449050.JNLE01000003_gene3887	82.8	7.73e-19	N/A	N/A
Pfam	UHGV-0003465_28	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0003465_28	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0003465_29	phrog_556	125.8	1.5e-37	minor head protein	head and packaging
UniRef90	UHGV-0003465_29	UniRef90_UPI00143BEF55	122.0	5.2e-33	minor capsid protein	N/A
eggNOG-mapper	UHGV-0003465_29	1120998.AUFC01000030_gene2239	105.0	3.94e-27	Minor capsid protein	N/A
Pfam	UHGV-0003465_29	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0003465_29	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0003465_30	phrog_3266	121.2	4.9e-36	tail completion	connector
eggNOG-mapper	UHGV-0003465_30	411902.CLOBOL_00130	112.0	1.08e-29	N/A	N/A
structural_annotation	UHGV-0003465_30	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0003465_31	phrog_3099	148.4	3.36312e-44	N/A	unknown function
eggNOG-mapper	UHGV-0003465_31	1160721.RBI_II00532	204.0	0	N/A	N/A
structural_annotation	UHGV-0003465_31	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0003465_32	phrog_11299	183.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0003465_32	1449050.JNLE01000003_gene3883	67.8	0.00000000000685	N/A	N/A
structural_annotation	UHGV-0003465_32	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0003465_33	phrog_706	147.9	5.46506e-44	N/A	unknown function
UniRef90	UHGV-0003465_33	UniRef90_UPI001B3C82AE	216.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0003465_33	1449050.JNLE01000003_gene3882	200.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0003465_33	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0003465_33	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0003465_34	phrog_1535	308.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0003465_34	UniRef90_R6TDK7	1238.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-0003465_34	1226322.HMPREF1545_00059	394.0	0	tape measure	N/A
COG	UHGV-0003465_34	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0003465_34	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0003465_35	phrog_1194	89.7	2.5e-26	N/A	unknown function
eggNOG-mapper	UHGV-0003465_35	1160721.RBI_II00527	207.0	0	N/A	N/A
structural_annotation	UHGV-0003465_35	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0003465_36	phrog_6616	57.0	2.1e-26	tail protein	tail
eggNOG-mapper	UHGV-0003465_36	1160721.RBI_II00526	645.0	0	N/A	N/A
structural_annotation	UHGV-0003465_36	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0003465_40	phrog_199	84.6	1.1e-24	holin	lysis
UniRef90	UHGV-0003465_40	UniRef90_A0A5R9MH90	267.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0003465_40	887325.HMPREF0381_0407	172.0	0	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0003465_40	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0003465_40	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0003465_40	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0003465_40	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0003465_41	K01447	56.8	4.4e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0003465_41	phrog_7698	162.5	0	endolysin	lysis
UniRef90	UHGV-0003465_41	UniRef90_A0A5R9MKH3	513.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0003465_41	877411.JMMA01000002_gene2384	191.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0003465_41	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0003465_41	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0003465_41	PF01510,PF18342,MF_04111,NF008758,COG3023,COG3807	N/A	N/A	N/A	N/A
PHROG	UHGV-0003465_42	phrog_13416	105.4	2e-31	N/A	unknown function
UniRef90	UHGV-0003465_42	UniRef90_UPI0009A6FFD7	177.0	0	abortive infection system antitoxin AbiGi family protein	N/A
eggNOG-mapper	UHGV-0003465_42	398767.Glov_0061	90.5	1.72e-18	Putative abortive phage resistance protein AbiGi, antitoxin	N/A
PADLOC	UHGV-0003465_42	AbiGi	260.5	0	AbiGi	Abi
Pfam	UHGV-0003465_42	PF10899	N/A	N/A	Putative abortive phage resistance protein AbiGi, antitoxin	AbiGi
structural_annotation	UHGV-0003465_42	PF10899	N/A	N/A	N/A	N/A
PADLOC	UHGV-0003465_43	AbiGii	139.3	4.99997e-41	AbiGii	Abi
Pfam	UHGV-0003465_43	PF16873	N/A	N/A	Putative abortive phage resistance protein AbiGii toxin	AbiGii_2

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0003465	Yes	34,040	45	100	1