vOTU vOTU-042535

vOTU: vOTU-042535

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-042535
Number of genomes	16
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00556 → vGENUS-00560 → vSUBGEN-15985 → vOTU-042535
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900547315
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0008808
Biosample ID	SAMEA4765800
Genome length (bp)	43,339 bps
CheckV completeness	100.00% (Complete)
CDS count	58
CDS density	91.77%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900547315	Total connections	74	Host agreement	71.62
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0008808_1	K21919	121.1	8.9e-36	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-0008808_1	phrog_923	111.2	2.7e-33	N/A	unknown function
Pfam	UHGV-0008808_1	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
PHROG	UHGV-0008808_2	phrog_7566	72.8	3.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-0008808_2	693746.OBV_25470	70.1	0.0000000000000422	N/A	N/A
UniRef90	UHGV-0008808_4	UniRef90_A0A8D9PDS2	107.0	1.58e-26	NinB protein	N/A
eggNOG-mapper	UHGV-0008808_4	1304866.K413DRAFT_1197	54.7	0.000000324	N/A	N/A
structural_annotation	UHGV-0008808_4	PF05772	N/A	N/A	N/A	N/A
KOfam	UHGV-0008808_5	K02315	128.1	8.5e-38	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0008808_5	phrog_50	118.0	9.8e-35	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008808_5	UniRef90_A0A810Q3X8	195.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0008808_5	445972.ANACOL_01829	184.0	0	N/A	N/A
Pfam	UHGV-0008808_5	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0008808_5	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0008808_5	PF01695,MF_01919,NF005378,COG1484	N/A	N/A	N/A	N/A
KOfam	UHGV-0008808_6	K03111	140.1	2.4e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0008808_6	phrog_44	137.9	6.59998e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008808_6	UniRef90_R6IDK3	177.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0008808_6	1007096.BAGW01000023_gene151	169.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0008808_6	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0008808_6	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0008808_6	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0008808_6	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0008808_6	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0008808_7	phrog_7838	125.6	3.9e-37	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008808_7	UniRef90_A0A8D9UGW3	186.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0008808_7	742767.HMPREF9456_02052	159.0	0	N/A	N/A
structural_annotation	UHGV-0008808_7	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0008808_10	phrog_2113	44.1	0.0000000000016	N/A	unknown function
UniRef90	UHGV-0008808_10	UniRef90_A0A8D9UH91	110.0	1.68e-27	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0008808_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0008808_10	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0008808_14	1235835.C814_03153	65.5	0.000000000000265	N/A	N/A
structural_annotation	UHGV-0008808_14	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0008808_15	UniRef90_A0A4Q7CR00	84.3	6.76e-20	N/A	N/A
eggNOG-mapper	UHGV-0008808_15	186153.Q8SDN2_BPPHD	78.2	3.1e-18	N/A	N/A
Pfam	UHGV-0008808_15	PF05339	N/A	N/A	N/A	DUF739
structural_annotation	UHGV-0008808_15	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0008808_16	UniRef90_A0A1Y4HWW0	63.2	0.00000000003	N/A	N/A
eggNOG-mapper	UHGV-0008808_16	171693.BN988_01635	63.9	0.00000000000283	N/A	N/A
Pfam	UHGV-0008808_16	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0008808_16	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
KOfam	UHGV-0008808_19	K22300	42.9	0.0000000000088	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0008808_19	phrog_2967	45.6	0.00000000000093	transcriptional regulator	transcription regulation
UniRef90	UHGV-0008808_19	UniRef90_UPI001EDCF802	119.0	4.96e-32	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0008808_19	411471.SUBVAR_05818	89.4	3.36e-21	sequence-specific DNA binding	N/A
Pfam	UHGV-0008808_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0008808_19	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0008808_19	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
COG	UHGV-0008808_22	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
structural_annotation	UHGV-0008808_22	PF13443,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0008808_24	K14059	99.3	6e-29	int; integrase	N/A
PHROG	UHGV-0008808_24	phrog_1	125.2	5.4e-37	integrase	integration and excision
UniRef90	UHGV-0008808_24	UniRef90_UPI00195CC1EE	446.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0008808_24	411471.SUBVAR_05816	120.0	4.13e-28	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0008808_24	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0008808_24	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0008808_24	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0008808_25	UniRef90_A0A843GWV6	86.3	6.98e-20	Rubrerythrin domain-containing protein	N/A
Pfam	UHGV-0008808_25	PF02915	N/A	N/A	Rubrerythrin	Rubrerythrin
structural_annotation	UHGV-0008808_25	PF02255,NF007156,COG1447	N/A	N/A	N/A	N/A
UniRef90	UHGV-0008808_28	UniRef90_A0A8D9PDT6	83.2	4e-19	Transcriptional regulatory protein	N/A
PHROG	UHGV-0008808_29	phrog_1129	69.3	3.8e-20	holin	lysis
UniRef90	UHGV-0008808_29	UniRef90_A0A2V2CUX8	127.0	1.19e-36	Enolase	N/A
eggNOG-mapper	UHGV-0008808_29	1226322.HMPREF1545_00069	118.0	1.02e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0008808_29	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0008808_29	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0008808_30	phrog_937	64.8	1.4e-18	hemolysin	other
eggNOG-mapper	UHGV-0008808_30	1519439.JPJG01000023_gene533	89.4	5.79e-22	N/A	N/A
PHROG	UHGV-0008808_31	phrog_1493	60.7	2.8e-17	endolysin	lysis
UniRef90	UHGV-0008808_31	UniRef90_A0A1C6GMR6	191.0	0	NlpC/P60 family	N/A
eggNOG-mapper	UHGV-0008808_31	871963.Desdi_1346	129.0	1.6e-32	NLP P60 protein	N/A
Pfam	UHGV-0008808_31	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0008808_31	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0008808_31	PF01471,PF00877,NF033742,NF038080,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0008808_32	phrog_30034	106.3	3.8e-31	N/A	unknown function
UniRef90	UHGV-0008808_32	UniRef90_A0A3D1XGA4	219.0	0	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0008808_32	411471.SUBVAR_06976	86.3	3.9e-19	N/A	N/A
Pfam	UHGV-0008808_32	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
PHROG	UHGV-0008808_33	phrog_5073	40.6	0.000000000022	tail fiber protein	tail
Pfam	UHGV-0008808_33	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0008808_35	phrog_511	229.5	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0008808_35	1410650.JHWL01000003_gene2827	314.0	0	N/A	N/A
structural_annotation	UHGV-0008808_35	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0008808_36	phrog_12105	111.9	3.8e-33	N/A	unknown function
eggNOG-mapper	UHGV-0008808_36	1519439.JPJG01000060_gene1891	78.2	6.11e-17	N/A	N/A
PHROG	UHGV-0008808_37	phrog_15239	51.8	0.000000000000013	N/A	unknown function
PHROG	UHGV-0008808_38	phrog_1357	199.6	0	major head protein	head and packaging
UniRef90	UHGV-0008808_38	UniRef90_A0A3C0NPN1	585.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0008808_38	1410650.JHWL01000003_gene2830	263.0	0	N/A	N/A
NCBIFam	UHGV-0008808_38	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0008808_38	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0008808_39	phrog_13908	116.4	1.7e-34	N/A	unknown function
PHROG	UHGV-0008808_40	phrog_22978	717.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0008808_40	1321782.HMPREF1986_00356	198.0	0	N/A	N/A
Pfam	UHGV-0008808_40	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
eggNOG-mapper	UHGV-0008808_41	1410650.JHWL01000003_gene2815	69.7	0.000000000292	N/A	N/A
KOfam	UHGV-0008808_42	K13925	53.1	0.0000000000000021	pfbA; plasmin and fibronectin-binding protein A	N/A
PHROG	UHGV-0008808_42	phrog_372	119.8	3e-35	tail protein	tail
eggNOG-mapper	UHGV-0008808_42	925984.E5AGC7_9CAUD	67.4	0.0000000225	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-0008808_42	PF05895	N/A	N/A	N/A	DUF859
Pfam	UHGV-0008808_42	PF12708	N/A	N/A	Pectate lyase superfamily protein	Pectate_lyase_3
KOfam	UHGV-0008808_43	K07584	48.4	0.00000000000018	N/A	N/A
PHROG	UHGV-0008808_43	phrog_4478	52.7	0.0000000000000055	peptidase	other
UniRef90	UHGV-0008808_43	UniRef90_A0A7C6WRZ1	58.2	0.00000000444	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0008808_43	718252.FP2_29210	50.1	0.00000669	Cysteine protease Prp	N/A
Pfam	UHGV-0008808_43	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0008808_43	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008808_43	PF04327,NF011132,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0008808_44	phrog_156	287.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0008808_44	1410650.JHWL01000003_gene2833	520.0	0	N/A	N/A
structural_annotation	UHGV-0008808_44	PF16510,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008808_46	PF05534,COG4877	N/A	N/A	N/A	N/A
KOfam	UHGV-0008808_47	K06909	101.9	7.9e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0008808_47	phrog_979	213.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0008808_47	UniRef90_A0A2V2CDD6	800.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0008808_47	411483.FAEPRAA2165_01044	559.0	0	Terminase-like family	N/A
Pfam	UHGV-0008808_47	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0008808_47	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0008808_47	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0008808_48	UniRef90_A0A3C0NNN3	79.3	0.00000000000000119	HTH psq-type domain-containing protein	N/A
PHROG	UHGV-0008808_50	phrog_190	120.9	9.7e-36	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008808_50	UniRef90_UPI000367648A	110.0	4.8e-29	N/A	N/A
eggNOG-mapper	UHGV-0008808_50	445974.CLORAM_02947	109.0	1.49e-29	N/A	N/A
Pfam	UHGV-0008808_50	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0008808_50	PF06356	N/A	N/A	N/A	N/A
UniRef90	UHGV-0008808_53	UniRef90_A0A8D9PDT5	64.3	0.0000000000625	Hydrogenase/urease nickel incorporation protein	N/A
PHROG	UHGV-0008808_54	phrog_2245	100.3	1.8e-29	nucleoside triphosphate pyrophosphohydrolase	other
eggNOG-mapper	UHGV-0008808_54	293826.Amet_2596	88.2	6.75e-21	N/A	N/A
structural_annotation	UHGV-0008808_54	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
UniRef90	UHGV-0008808_55	UniRef90_A0A8D9PDQ6	144.0	5.32493e-44	Restriction alleviation protein	N/A
Pfam	UHGV-0008808_55	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0008808_55	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0008808_55	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0008808_56	phrog_599	40.0	0.000000000078	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0008808_56	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0008808_56	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0008808_56	PF14354,NF007260	N/A	N/A	N/A	N/A
KOfam	UHGV-0008808_58	K15352	145.0	0	pipB2; secreted effector protein PipB2	N/A
PHROG	UHGV-0008808_58	phrog_923	98.3	0	N/A	unknown function
Pfam	UHGV-0008808_58	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0008808	Yes	43,339	58	100	1
UHGV-0010524	No	43,099	58	100	1
UHGV-0010926	No	43,099	58	100	1
UHGV-0012359	No	43,099	58	100	1
UHGV-0014557	No	42,949	58	100	1
UHGV-0027090	No	42,949	58	100	1
UHGV-0012833	No	42,784	58	100	1
UHGV-0018779	No	42,784	58	100	1
UHGV-0011029	No	43,281	58	100	1
UHGV-0012589	No	43,188	58	100	1
UHGV-0040477	No	43,017	58	100	1
UHGV-0013626	No	42,810	58	100	1
UHGV-0023878	No	42,708	58	99	1
UHGV-0010427	No	42,702	58	99	1
UHGV-0011483	No	41,303	58	96	1
UHGV-0029683	No	32,171	58	75	1