vOTU vOTU-042559

vOTU: vOTU-042559

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-042559
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00026 → vSUBFAM-01633 → vGENUS-05536 → vSUBGEN-14701 → vOTU-042559
Host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660
Host range breadth	Family
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0009646
Biosample ID	N/A
Genome length (bp)	37,437 bps
CheckV completeness	100.00% (Complete)
CDS count	58
CDS density	91.57%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660	Total connections	319	Host agreement	80.56
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0009646_9	K04763	137.4	1.50001e-40	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0009646_9	phrog_1	110.7	1.8e-32	integrase	integration and excision
UniRef90	UHGV-0009646_9	UniRef90_UPI000E547716	310.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0009646_9	1232449.BAHV02000016_gene1840	265.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0009646_9	PF02899	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
Pfam	UHGV-0009646_9	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0009646_9	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0009646_9	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0009646_12	K03111	108.6	9.4e-32	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0009646_12	phrog_44	121.5	7.4e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009646_12	UniRef90_A0A3D4DIX6	101.0	4.06e-25	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0009646_12	720554.Clocl_4133	97.4	2.8e-24	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0009646_12	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0009646_12	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0009646_12	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0009646_12	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0009646_12	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0009646_13	phrog_11233	133.1	2.3e-39	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009646_13	UniRef90_UPI0018C576A5	139.0	4.62e-38	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0009646_13	1298920.KI911353_gene2714	159.0	0	DnaD domain protein	N/A
COG	UHGV-0009646_13	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0009646_16	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0009646_17	K07727	46.8	0.00000000000067	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-0009646_17	phrog_8	55.4	0.0000000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-0009646_17	UniRef90_B9DJG2	60.8	0.00000000299	Putative repressor, phage associated	N/A
eggNOG-mapper	UHGV-0009646_17	396513.SCA_0466	60.8	0.000000000501	sequence-specific DNA binding	N/A
Pfam	UHGV-0009646_17	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0009646_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0009646_18	K06400	271.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0009646_18	phrog_95	285.1	0	integrase	integration and excision
UniRef90	UHGV-0009646_18	UniRef90_UPI0018AC52BE	305.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0009646_18	1128398.Curi_c22150	266.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0009646_18	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0009646_18	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0009646_18	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0009646_18	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0009646_20	272562.CA_C1147	101.0	1.77e-25	N/A	N/A
PHROG	UHGV-0009646_22	phrog_1863	43.9	0.0000000000028	N/A	unknown function
eggNOG-mapper	UHGV-0009646_22	1232449.BAHV02000017_gene1511	47.4	0.00000461	N/A	N/A
PHROG	UHGV-0009646_23	phrog_372	289.3	0	tail protein	tail
UniRef90	UHGV-0009646_23	UniRef90_UPI0018E46574	332.0	0	N/A	N/A
eggNOG-mapper	UHGV-0009646_23	445974.CLORAM_02918	112.0	2.84e-23	N/A	N/A
Pfam	UHGV-0009646_23	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0009646_23	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0009646_23	PF05895,MF_04116,MF_00791,NF010681,COG3401	N/A	N/A	N/A	N/A
PHROG	UHGV-0009646_24	phrog_1067	339.5	0	minor head protein	head and packaging
UniRef90	UHGV-0009646_24	UniRef90_A0A2P1CCB3	548.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0009646_24	1399942.U3PFX4_9CAUD	520.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-0009646_24	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0009646_24	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-0009646_24	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0009646_25	phrog_2234	41.8	0.000000000012	tail spike protein	tail
UniRef90	UHGV-0009646_25	UniRef90_A0A843HLQ0	97.1	1.61e-17	Right-handed parallel beta-helix repeat-containing protein	N/A
COG	UHGV-0009646_25	COG5434	N/A	N/A	Polygalacturonase	N/A
eggNOG-mapper	UHGV-0009646_26	1399942.U3PDS7_9CAUD	74.3	0.00000000000000112	N/A	N/A
structural_annotation	UHGV-0009646_26	PF08481,NF032891,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0009646_27	phrog_33	75.1	1.6e-21	distal tail protein Dit	tail
UniRef90	UHGV-0009646_27	UniRef90_A0A075KJA3	275.0	0	Putative tail component	N/A
eggNOG-mapper	UHGV-0009646_27	1399942.U3PIW9_9CAUD	280.0	0	Phage tail protein	N/A
structural_annotation	UHGV-0009646_27	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0009646_28	phrog_58	356.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0009646_28	UniRef90_UPI001F18B975	320.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0009646_28	1437608.BBIA_2554	309.0	0	phage tail tape measure protein	N/A
COG	UHGV-0009646_28	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0009646_29	phrog_2115	44.4	0.0000000000034	tail protein	tail
eggNOG-mapper	UHGV-0009646_29	508419.F8J169_9CAUD	132.0	1.68e-38	N/A	N/A
structural_annotation	UHGV-0009646_29	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0009646_30	phrog_88	102.1	5.8e-30	major tail protein	tail
UniRef90	UHGV-0009646_30	UniRef90_A0A075KJR8	162.0	0	Putative major tail protein	N/A
eggNOG-mapper	UHGV-0009646_30	1399942.U3PBH4_9CAUD	162.0	0	N/A	N/A
NCBIFam	UHGV-0009646_30	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0009646_30	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0009646_31	phrog_78	53.9	0.0000000000000035	tail terminator	connector
eggNOG-mapper	UHGV-0009646_31	508419.F8J167_9CAUD	129.0	2.56e-37	N/A	N/A
structural_annotation	UHGV-0009646_31	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0009646_32	508419.F8J166_9CAUD	83.2	2.84e-18	N/A	N/A
Pfam	UHGV-0009646_32	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0009646_32	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0009646_33	phrog_25	46.3	0.00000000000066	head closure Hc1	connector
UniRef90	UHGV-0009646_33	UniRef90_F8J165	154.0	0	Putative head-tail adaptor	N/A
eggNOG-mapper	UHGV-0009646_33	508419.F8J165_9CAUD	154.0	0	Phage head-tail joining protein	N/A
Pfam	UHGV-0009646_33	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-0009646_33	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0009646_34	UniRef90_A0A6P1MNU9	101.0	5.84e-26	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0009646_34	508419.F8J164_9CAUD	118.0	2.99e-33	N/A	N/A
NCBIFam	UHGV-0009646_34	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0009646_34	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0009646_35	phrog_10	204.0	0	major head protein	head and packaging
UniRef90	UHGV-0009646_35	UniRef90_A0A843HQ06	405.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0009646_35	1399942.U3PDR8_9CAUD	391.0	0	peptidase activity	N/A
Pfam	UHGV-0009646_35	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0009646_35	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0009646_35	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0009646_36	K06904	90.8	2e-26	N/A	N/A
PHROG	UHGV-0009646_36	phrog_80	113.7	2.5e-33	head maturation protease	head and packaging
UniRef90	UHGV-0009646_36	UniRef90_U3PIW1	208.0	0	Putative ClpP protease	N/A
eggNOG-mapper	UHGV-0009646_36	508419.F8J161_9CAUD	209.0	0	peptidase activity	N/A
Pfam	UHGV-0009646_36	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0009646_36	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
structural_annotation	UHGV-0009646_36	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0009646_37	phrog_12	187.2	0	portal protein	head and packaging
UniRef90	UHGV-0009646_37	UniRef90_A0A843HZ12	495.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0009646_37	1399942.U3PFW0_9CAUD	479.0	0	Phage portal protein	N/A
Pfam	UHGV-0009646_37	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0009646_37	TIGR01537.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0009646_37	PF04860,PF08184,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0009646_39	K16698	103.9	1.7e-31	tuaG; teichuronic acid biosynthesis glycosyltransferase TuaG [EC:2.4.-.-]	N/A
UniRef90	UHGV-0009646_39	UniRef90_A0A843HQZ6	228.0	0	Glycosyltransferase family 2 protein	N/A
eggNOG-mapper	UHGV-0009646_39	1293597.BN147_01370	98.6	9.52e-21	glycosyl transferase family 2	N/A
Pfam	UHGV-0009646_39	PF00535	N/A	N/A	Glycosyl transferase family 2	Glycos_transf_2
COG	UHGV-0009646_39	COG1216	N/A	N/A	Glycosyltransferase, GT2 family	N/A
structural_annotation	UHGV-0009646_39	PF00535,MF_01164,NF007482,COG1215	N/A	N/A	N/A	N/A
PHROG	UHGV-0009646_40	phrog_9	287.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0009646_40	UniRef90_A0A075KKZ0	858.0	0	Putative terminase large subunit	N/A
eggNOG-mapper	UHGV-0009646_40	508419.F8J159_9CAUD	862.0	0	Phage Terminase	N/A
Pfam	UHGV-0009646_40	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0009646_40	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
structural_annotation	UHGV-0009646_40	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0009646_41	phrog_13845	163.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0009646_41	1399942.U3PDR2_9CAUD	147.0	2.66247e-44	N/A	N/A
structural_annotation	UHGV-0009646_41	PF05119,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0009646_42	K03497	56.6	6e-16	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0009646_42	phrog_2159	206.2	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009646_42	UniRef90_UPI00093B5789	250.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0009646_42	457412.RSAG_01148	249.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0009646_42	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0009646_42	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0009646_42	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0009646_43	K00390	40.9	0.0000000000013	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0009646_43	phrog_2302	261.9	0	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0009646_43	UniRef90_A0A3A9GS93	344.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-0009646_43	397291.C804_05812	336.0	0	phosphoadenosine phosphosulfate	N/A
Pfam	UHGV-0009646_43	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0009646_43	COG3969	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009646_43	PF01507,MF_00063,NF006327,COG3969	N/A	N/A	N/A	N/A
PHROG	UHGV-0009646_44	phrog_620	131.7	4e-39	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009646_44	UniRef90_A0A174LQ74	160.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0009646_44	457412.RSAG_01150	149.0	2.63024e-42	DNA binding	N/A
PADLOC	UHGV-0009646_44	MTase_II_00015	46.7	0.00000000000059	Type II methyltransferase	RM
Pfam	UHGV-0009646_44	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0009646_44	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0009646_44	PF02195,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0009646_45	phrog_424	60.3	2.6e-17	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0009646_45	UniRef90_UPI000938AA94	169.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0009646_45	457412.RSAG_01151	163.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0009646_45	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0009646_45	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0009646_45	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0009646_46	171101.spr0968	140.0	6.91e-36	N/A	N/A
structural_annotation	UHGV-0009646_46	PF00474,MF_01426,TIGR00912,COG0591	N/A	N/A	N/A	N/A
PHROG	UHGV-0009646_47	phrog_13321	48.5	0.00000000000011	N/A	unknown function
UniRef90	UHGV-0009646_47	UniRef90_A0A843H555	285.0	0	Radical SAM protein	N/A
eggNOG-mapper	UHGV-0009646_47	457421.CBFG_04971	269.0	0	N/A	N/A
COG	UHGV-0009646_47	COG1533	N/A	N/A	DNA repair photolyase	N/A
PHROG	UHGV-0009646_48	phrog_918	114.9	2.5e-34	N/A	unknown function
UniRef90	UHGV-0009646_48	UniRef90_UPI001F22DD3C	125.0	1.16e-35	N/A	N/A
eggNOG-mapper	UHGV-0009646_48	888055.HMPREF9015_01979	126.0	9.64e-37	N/A	N/A
Pfam	UHGV-0009646_48	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0009646_48	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0009646_49	phrog_774	60.2	4.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-0009646_49	397290.C810_05225	73.6	5.37e-16	N/A	N/A
PHROG	UHGV-0009646_51	phrog_144	61.3	1.7e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0009646_51	UniRef90_I2E873	136.0	3.95e-39	HNHc domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0009646_51	1399942.U3PDW1_9CAUD	137.0	2.61999e-40	HNH endonuclease	N/A
Pfam	UHGV-0009646_51	PF01844	N/A	N/A	HNH endonuclease	HNH
KOfam	UHGV-0009646_52	K07273	167.3	0	acm; lysozyme	N/A
PHROG	UHGV-0009646_52	phrog_291	151.8	4.2039e-45	endolysin	lysis
UniRef90	UHGV-0009646_52	UniRef90_UPI0018E40569	299.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0009646_52	1193128.A200_03694	257.0	0	lysozyme activity	N/A
Pfam	UHGV-0009646_52	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0009646_52	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-0009646_52	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0009646_52	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0009646_52	PF01183,PF01476,TIGR02899,NF007360,COG3757,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0009646_53	phrog_881	88.8	3e-26	holin	lysis
UniRef90	UHGV-0009646_53	UniRef90_UPI001D0692FC	97.8	2.17e-25	phage holin	N/A
eggNOG-mapper	UHGV-0009646_53	742740.HMPREF9474_02251	100.0	2.87e-27	Putative phage holin Dp-1	N/A
Pfam	UHGV-0009646_53	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0009646_53	PF16938	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0009646_58	TIGR01636	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0009646	Yes	37,437	26	100	1