vOTU vOTU-042609

vOTU: vOTU-042609

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-042609
Number of genomes	7
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00060 → vGENUS-01007 → vSUBGEN-29675 → vOTU-042609
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0011300
Biosample ID	N/A
Genome length (bp)	41,684 bps
CheckV completeness	100.00% (Complete)
CDS count	56
CDS density	93.83%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170	Total connections	66	Host agreement	96.97
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp900548625	Total connections	12	Host agreement	91.67

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0011300_3	K00390	99.8	2.6e-29	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0011300_3	phrog_424	126.1	2.1e-37	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0011300_3	UniRef90_UPI001D087498	424.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0011300_3	1408437.JNJN01000032_gene2312	330.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0011300_3	BrxP_00001	65.6	9.6e-20	BrxP	BREX
Pfam	UHGV-0011300_3	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0011300_3	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0011300_3	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0011300_5	phrog_3136	138.0	2.79993e-41	N/A	unknown function
UniRef90	UHGV-0011300_5	UniRef90_A0A3D0HBD2	166.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0011300_5	642492.Clole_1416	74.3	0.00000000000000554	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-0011300_5	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0011300_5	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0011300_5	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0011300_6	phrog_4019	74.0	1.4e-21	N/A	unknown function
PHROG	UHGV-0011300_7	phrog_190	109.5	2.7e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0011300_7	UniRef90_UPI0006C2AC63	127.0	8.72e-35	N/A	N/A
eggNOG-mapper	UHGV-0011300_7	693746.OBV_25250	119.0	2.32e-32	N/A	N/A
Pfam	UHGV-0011300_7	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0011300_7	PF06356	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0011300_9	PF20111,NF033202	N/A	N/A	N/A	N/A
PHROG	UHGV-0011300_11	phrog_3584	120.0	1.6e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0011300_11	537013.CLOSTMETH_02141	75.9	0.0000000000000515	N/A	N/A
structural_annotation	UHGV-0011300_11	PF21578,MF_00360	N/A	N/A	N/A	N/A
UniRef90	UHGV-0011300_12	UniRef90_A0A3D2I6C5	59.3	0.000000000243	Conjugal transfer protein	N/A
eggNOG-mapper	UHGV-0011300_12	272563.CD630_05081	60.5	0.0000000000146	Cysteine-rich KTR	N/A
Pfam	UHGV-0011300_12	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0011300_12	PF14205	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0011300_13	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0011300_14	K06909	135.5	4.5e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0011300_14	phrog_2	125.8	5.1e-37	terminase large subunit	head and packaging
UniRef90	UHGV-0011300_14	UniRef90_A0A810Q5R0	615.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0011300_14	1410650.JHWL01000003_gene2834	570.0	0	N/A	N/A
Pfam	UHGV-0011300_14	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0011300_14	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0011300_14	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0011300_15	phrog_511	230.2	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0011300_15	1410650.JHWL01000003_gene2827	319.0	0	N/A	N/A
structural_annotation	UHGV-0011300_15	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0011300_16	phrog_156	298.6	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0011300_16	1410650.JHWL01000003_gene2833	535.0	0	N/A	N/A
structural_annotation	UHGV-0011300_16	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
PHROG	UHGV-0011300_17	phrog_13908	199.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0011300_17	1410650.JHWL01000003_gene2831	122.0	4.94e-30	N/A	N/A
PHROG	UHGV-0011300_18	phrog_1357	231.7	0	major head protein	head and packaging
UniRef90	UHGV-0011300_18	UniRef90_A0A2V2CFL5	390.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0011300_18	1410650.JHWL01000003_gene2830	281.0	0	N/A	N/A
Pfam	UHGV-0011300_18	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0011300_18	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0011300_18	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0011300_19	phrog_15239	45.5	0.0000000000011	N/A	unknown function
PHROG	UHGV-0011300_20	phrog_12105	115.0	3.8e-34	N/A	unknown function
eggNOG-mapper	UHGV-0011300_20	1226322.HMPREF1545_03850	58.9	0.00000000438	N/A	N/A
eggNOG-mapper	UHGV-0011300_21	537007.BLAHAN_05255	64.7	0.0000000287	N/A	N/A
UniRef90	UHGV-0011300_23	UniRef90_R5DCX9	186.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0011300_23	1410650.JHWL01000003_gene2815	135.0	6.54e-33	N/A	N/A
UniRef90	UHGV-0011300_24	UniRef90_U2SNH2	405.0	0	LPD23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0011300_24	1408437.JNJN01000039_gene389	503.0	0	heme binding	N/A
Pfam	UHGV-0011300_24	PF18838	N/A	N/A	Large polyvalent protein associated domain 23	LPD23
Pfam	UHGV-0011300_24	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
COG	UHGV-0011300_24	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0011300_25	PF01835,NF005176,COG5456	N/A	N/A	N/A	N/A
KOfam	UHGV-0011300_26	K16617	40.8	0.000000000011	COL13A; collagen type XIII alpha	N/A
PHROG	UHGV-0011300_26	phrog_8745	41.4	0.0000000000046	tail fiber protein	tail
Pfam	UHGV-0011300_26	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0011300_26	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
KOfam	UHGV-0011300_28	K16628	57.4	5.4e-17	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0011300_28	phrog_819	53.7	0.0000000000000017	tail protein	tail
Pfam	UHGV-0011300_28	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0011300_28	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
KOfam	UHGV-0011300_29	K03651	64.3	1.7e-18	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	N/A
PHROG	UHGV-0011300_29	phrog_7158	53.7	8.6e-17	N/A	unknown function
UniRef90	UHGV-0011300_29	UniRef90_A0A1I1Z9R5	116.0	4.82e-24	Calcineurin-like phosphoesterase	N/A
structural_annotation	UHGV-0011300_29	PF02368,PF09423,MF_00575,NF003743,NF005261,COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0011300_30	phrog_937	51.3	0.00000000000002	hemolysin	other
eggNOG-mapper	UHGV-0011300_30	1519439.JPJG01000023_gene533	73.6	8.87e-16	N/A	N/A
PHROG	UHGV-0011300_32	phrog_355	59.2	6.4e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0011300_32	UniRef90_UPI00156F0E9C	160.0	0	N/A	N/A
eggNOG-mapper	UHGV-0011300_32	397290.C810_05229	152.0	0	N/A	N/A
Pfam	UHGV-0011300_32	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0011300_32	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0011300_33	phrog_13256	61.2	9.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0011300_33	1226322.HMPREF1545_00166	73.2	4.04e-16	N/A	N/A
KOfam	UHGV-0011300_34	K01447	123.4	2.3e-36	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0011300_34	phrog_1794	132.9	2.6e-39	amidase	lysis
UniRef90	UHGV-0011300_34	UniRef90_A0A3D4VSU2	181.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0011300_34	411470.RUMGNA_02087	162.0	1.54143e-44	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0011300_34	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0011300_34	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0011300_34	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
UniRef90	UHGV-0011300_35	UniRef90_A0A1C6JAI6	65.5	0.0000000000029	RNA polymerase sigma factor, sigma-70 family	N/A
structural_annotation	UHGV-0011300_35	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0011300_36	K19167	118.7	6.2e-35	abiQ; protein AbiQ	N/A
PHROG	UHGV-0011300_36	phrog_9764	125.1	4.2e-37	N/A	unknown function
UniRef90	UHGV-0011300_36	UniRef90_A0A845R8D8	216.0	0	Type III toxin-antitoxin system ToxN/AbiQ family toxin	N/A
eggNOG-mapper	UHGV-0011300_36	1519439.JPJG01000060_gene1906	175.0	0	Toxin ToxN, type III toxin-antitoxin system	N/A
PADLOC	UHGV-0011300_36	AbiQ	149.9	2.24208e-44	AbiQ	Abi
Pfam	UHGV-0011300_36	PF13958	N/A	N/A	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
structural_annotation	UHGV-0011300_36	PF13958	N/A	N/A	N/A	N/A
UniRef90	UHGV-0011300_39	UniRef90_A0A7M1RS47	68.6	0.000000000011	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0011300_39	1378168.N510_03079	63.2	0.00000000102	N/A	N/A
KOfam	UHGV-0011300_40	K14059	107.5	2e-31	int; integrase	N/A
PHROG	UHGV-0011300_40	phrog_1	100.4	2.2e-29	integrase	integration and excision
UniRef90	UHGV-0011300_40	UniRef90_UPI0013F5BA77	220.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0011300_40	478749.BRYFOR_05407	210.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0011300_40	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0011300_40	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0011300_40	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0011300_41	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0011300_43	K22300	46.4	0.00000000000075	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0011300_43	UniRef90_A0A1Y4L0A2	109.0	1.79e-28	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0011300_43	748224.HMPREF9436_01444	100.0	3.08e-25	N/A	N/A
Pfam	UHGV-0011300_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0011300_43	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0011300_43	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0011300_49	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0011300_51	PF05082	N/A	N/A	N/A	N/A
KOfam	UHGV-0011300_54	K00558	155.5	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0011300_54	phrog_363	242.9	0	DNA methyltransferase	other
UniRef90	UHGV-0011300_54	UniRef90_G4KRB8	341.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0011300_54	693746.OBV_01900	341.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0011300_54	MTase_II_00058	120.6	1.6e-35	Type II methyltransferase	RM
Pfam	UHGV-0011300_54	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0011300_54	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0011300_54	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0011300_54	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0011300	Yes	41,684	59	100	1
UHGV-0001774	No	39,916	59	95	1
UHGV-0004515	No	38,898	59	93	1
UHGV-0006377	No	38,432	59	92	1
UHGV-0000941	No	37,605	59	90	1
UHGV-1646247	No	15,509	61	37	1
UHGV-1775803	No	13,720	62	33	1