vOTU vOTU-042906

vOTU: vOTU-042906

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-042906
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00160 → vGENUS-00101 → vSUBGEN-07780 → vOTU-042906
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp000765235
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0016851
Biosample ID	SAMEA4766006
Genome length (bp)	43,085 bps
CheckV completeness	100.00% (Complete)
CDS count	57
CDS density	92.35%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp000765235	Total connections	190	Host agreement	81.58
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0016851_2	phrog_937	45.5	0.0000000000014	hemolysin	other
eggNOG-mapper	UHGV-0016851_2	1519439.JPJG01000023_gene533	97.4	3.74e-25	N/A	N/A
PHROG	UHGV-0016851_3	phrog_22978	777.5	0	N/A	unknown function
UniRef90	UHGV-0016851_3	UniRef90_A0A396KH15	506.0	0	PBECR3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0016851_3	1519439.JPJG01000011_gene53	370.0	0	N/A	N/A
eggNOG-mapper	UHGV-0016851_4	1519439.JPJG01000060_gene1904	150.0	5.81e-38	N/A	N/A
PHROG	UHGV-0016851_5	phrog_511	191.9	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0016851_5	1226322.HMPREF1545_00785	442.0	0	N/A	N/A
structural_annotation	UHGV-0016851_5	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0016851_7	phrog_7121	74.2	4e-22	tail fiber protein	tail
UniRef90	UHGV-0016851_7	UniRef90_R5ACE5	100.0	8.84e-20	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0016851_7	1235793.C809_04661	92.4	3.12e-17	N/A	N/A
Pfam	UHGV-0016851_7	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0016851_7	PF07902,NF041249	N/A	N/A	N/A	N/A
PHROG	UHGV-0016851_8	phrog_12105	57.2	3.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0016851_8	1519439.JPJG01000060_gene1891	53.9	0.000000156	N/A	N/A
PHROG	UHGV-0016851_9	phrog_27545	143.8	4.90454e-43	N/A	unknown function
UniRef90	UHGV-0016851_9	UniRef90_A0A2V2GQB6	136.0	5.77e-37	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0016851_9	1519439.JPJG01000060_gene1895	274.0	0	N/A	N/A
PHROG	UHGV-0016851_10	phrog_29409	42.0	0.000000000011	N/A	unknown function
PHROG	UHGV-0016851_11	phrog_37900	314.5	0	N/A	unknown function
UniRef90	UHGV-0016851_11	UniRef90_UPI001C3EA4DF	441.0	0	N/A	N/A
eggNOG-mapper	UHGV-0016851_11	552398.HMPREF0866_03098	234.0	0	N/A	N/A
Pfam	UHGV-0016851_11	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0016851_11	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
KOfam	UHGV-0016851_12	K19719	174.9	0	COL2A; collagen type II alpha	N/A
PHROG	UHGV-0016851_12	phrog_6320	128.7	0	tail fiber protein	tail
UniRef90	UHGV-0016851_12	UniRef90_UPI00068BE71D	436.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0016851_12	1519439.JPJG01000060_gene1892	436.0	0	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0016851_12	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0016851_12	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0016851_12	PF10651,NF033814	N/A	N/A	N/A	N/A
PHROG	UHGV-0016851_13	phrog_15239	76.6	2.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-0016851_13	1449126.JQKL01000003_gene1694	52.0	0.000000461	N/A	N/A
PHROG	UHGV-0016851_14	phrog_1357	254.2	0	major head protein	head and packaging
UniRef90	UHGV-0016851_14	UniRef90_A0A8D9UH64	502.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0016851_14	1449126.JQKL01000003_gene1695	451.0	0	N/A	N/A
Pfam	UHGV-0016851_14	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0016851_14	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0016851_14	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0016851_15	phrog_13908	258.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0016851_15	1410650.JHWL01000003_gene2831	93.6	6.96e-19	N/A	N/A
structural_annotation	UHGV-0016851_16	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0016851_17	phrog_156	322.2	0	portal protein	head and packaging
UniRef90	UHGV-0016851_17	UniRef90_A0A8D9UH10	682.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0016851_17	748224.HMPREF9436_01396	479.0	0	N/A	N/A
structural_annotation	UHGV-0016851_17	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0016851_18	K06909	101.4	1.1e-29	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0016851_18	phrog_979	196.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0016851_18	UniRef90_A0A1Y4WJ48	829.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0016851_18	748224.HMPREF9436_02548	610.0	0	Terminase-like family	N/A
Pfam	UHGV-0016851_18	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0016851_18	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0016851_18	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0016851_19	K07474	143.3	2.49992e-42	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0016851_19	phrog_51	136.5	1.3e-40	terminase small subunit	head and packaging
UniRef90	UHGV-0016851_19	UniRef90_A0A1Q6KQ99	177.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0016851_19	1158602.I590_02555	157.0	0	Terminase small subunit	N/A
Pfam	UHGV-0016851_19	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0016851_19	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0016851_19	PF03592,COG3728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0016851_21	445972.ANACOL_00168	49.7	0.000000443	N/A	N/A
PHROG	UHGV-0016851_23	phrog_3136	150.9	2.8026e-45	N/A	unknown function
UniRef90	UHGV-0016851_23	UniRef90_UPI001CBCD733	166.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0016851_23	97139.C824_00742	57.0	0.0000000994	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0016851_23	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0016851_23	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0016851_24	phrog_38832	69.9	3.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0016851_24	665956.HMPREF1032_00143	65.5	0.0000000000731	N/A	N/A
structural_annotation	UHGV-0016851_24	PF11717,TIGR02450	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016851_25	UniRef90_A0A8D9PDK1	79.7	6.6e-17	Anti-repressor	N/A
Pfam	UHGV-0016851_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0016851_26	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0016851_26	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016851_27	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0016851_28	K23779	48.8	1.5e-26	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0016851_28	phrog_8	75.5	5.3e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0016851_28	UniRef90_A0A7X6YBU5	77.0	0.0000000000000329	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0016851_28	502558.EGYY_18150	51.6	0.000000725	sequence-specific DNA binding	N/A
Pfam	UHGV-0016851_28	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0016851_28	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0016851_28	PF01381,PF13744,NF041951,COG3655,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-0016851_29	phrog_190	114.4	8.5e-34	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016851_29	UniRef90_A0A8D9PDD6	131.0	1.58e-36	Endonuclease	N/A
eggNOG-mapper	UHGV-0016851_29	1226322.HMPREF1545_00295	124.0	4.64e-34	N/A	N/A
Pfam	UHGV-0016851_29	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0016851_29	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-0016851_32	K02315	176.2	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0016851_32	phrog_50	154.4	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016851_32	UniRef90_UPI00137A9A0F	283.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0016851_32	203119.Cthe_2467	258.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-0016851_32	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-0016851_32	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-0016851_32	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0016851_32	PF01695,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0016851_33	phrog_2149	73.1	5.1e-21	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0016851_33	742740.HMPREF9474_03117	184.0	0	N/A	N/A
structural_annotation	UHGV-0016851_33	PF01978,NF000243,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-0016851_34	K03111	114.4	1.6e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0016851_34	phrog_44	108.3	8.2e-32	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016851_34	UniRef90_G4L1H2	143.0	9.33965e-42	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0016851_34	693746.OBV_19910	143.0	1.56945e-42	Single-strand binding protein family	N/A
Pfam	UHGV-0016851_34	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0016851_34	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0016851_34	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0016851_34	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0016851_34	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0016851_35	K07455	291.6	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0016851_35	phrog_148	275.7	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016851_35	UniRef90_U2SBP2	432.0	0	Recombination and repair protein RecT	N/A
eggNOG-mapper	UHGV-0016851_35	1226322.HMPREF1545_00015	432.0	0	RecT family	N/A
Pfam	UHGV-0016851_35	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0016851_35	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0016851_35	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0016851_35	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0016851_36	phrog_434	297.1	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016851_36	UniRef90_U2SK35	421.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0016851_36	1226322.HMPREF1545_00014	421.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0016851_36	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0016851_36	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0016851_36	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0016851_36	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0016851_39	K00571	113.2	3.1e-33	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0016851_39	phrog_67	100.5	8.4e-30	DNA methyltransferase	other
UniRef90	UHGV-0016851_39	UniRef90_A0A1C6E5W1	435.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0016851_39	35241.Q9XJE8_BPTU2	365.0	0	helicase activity	N/A
PADLOC	UHGV-0016851_39	MTase_II_00157	92.9	4.7e-27	Type II methyltransferase	RM
Pfam	UHGV-0016851_39	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-0016851_39	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016851_41	PF11112,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0016851_43	K07741	220.9	0	antB; anti-repressor protein	N/A
PHROG	UHGV-0016851_43	phrog_63	182.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0016851_43	UniRef90_UPI000466CBED	367.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0016851_43	1232443.BAIA02000079_gene53	367.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-0016851_43	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0016851_43	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0016851_43	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0016851_43	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016851_44	UniRef90_A0A8D9PDN2	83.2	1.22e-19	DNA-binding protein	N/A
Pfam	UHGV-0016851_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0016851_44	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0016851_45	phrog_8	45.4	0.0000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-0016851_45	UniRef90_UPI001CBE4822	100.0	4.45e-25	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0016851_45	411483.FAEPRAA2165_00756	55.1	0.000000153	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0016851_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0016851_45	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0016851_45	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016851_46	PF10754	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016851_47	UniRef90_A0A8D9UHA6	79.3	0.00000000000000115	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-0016851_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0016851_47	COG4636	N/A	N/A	Endonuclease, Uma2 family (restriction endonuclease fold)	N/A
structural_annotation	UHGV-0016851_47	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0016851_48	K14059	148.2	8.96831e-44	int; integrase	N/A
PHROG	UHGV-0016851_48	phrog_1	151.2	8.40779e-45	integrase	integration and excision
UniRef90	UHGV-0016851_48	UniRef90_A0A1C5W824	545.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0016851_48	693746.OBV_41260	295.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0016851_48	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0016851_48	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0016851_48	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016851_50	UniRef90_A0A345BNU6	53.1	0.00000364	Spore surface glycoprotein	N/A
structural_annotation	UHGV-0016851_50	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0016851_51	phrog_16490	49.2	0.0000000000001	N/A	unknown function
eggNOG-mapper	UHGV-0016851_51	397290.C810_05212	61.6	0.0000000111	N/A	N/A
PHROG	UHGV-0016851_52	phrog_22984	47.5	0.00000000000032	N/A	unknown function
UniRef90	UHGV-0016851_54	UniRef90_A0A8D9PDQ3	86.7	8.95e-21	ECF sigma factor	N/A
structural_annotation	UHGV-0016851_54	PF04545,MF_00674,NF009179,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0016851_55	phrog_21825	116.0	3.2e-34	endolysin	lysis
UniRef90	UHGV-0016851_55	UniRef90_R5SN87	254.0	0	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-0016851_55	693746.OBV_18290	151.0	1.90577e-43	CHAP domain	N/A
Pfam	UHGV-0016851_55	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0016851_55	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0016851_55	TIGR02594	N/A	N/A	N/A	N/A
PHROG	UHGV-0016851_56	phrog_13256	63.3	2.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-0016851_56	1226322.HMPREF1545_00132	76.3	1.6e-17	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0016851	Yes	43,085	57	100	1