vOTU vOTU-042919

vOTU: vOTU-042919

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-042919
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-04828 → vGENUS-09129 → vSUBGEN-10244 → vOTU-042919
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → CAG-488 → CAG-488 sp900539465
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0016964
Biosample ID	SAMEA4765554
Genome length (bp)	35,180 bps
CheckV completeness	100.00% (Complete)
CDS count	59
CDS density	93.09%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → CAG-488 → CAG-488 sp900539465	Total connections	68	Host agreement	97.06
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0016964_1	phrog_56	46.8	0.00000000000041	DNA methyltransferase	other
UniRef90	UHGV-0016964_1	UniRef90_UPI00164C574E	219.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0016964_1	1236504.HMPREF2132_01695	162.0	1.4013e-45	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0016964_1	MTase_II_00075	43.5	1.6e-16	Type II methyltransferase	RM
Pfam	UHGV-0016964_1	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
structural_annotation	UHGV-0016964_1	TIGR00673,NF008152,COG1513	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0016964_2	1507.HMPREF0262_00210	52.8	0.00000174	N/A	N/A
structural_annotation	UHGV-0016964_2	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0016964_4	phrog_599	43.6	0.0000000000052	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0016964_4	UniRef90_A0A173RHJ2	52.0	0.000000722	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0016964_4	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0016964_4	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0016964_4	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
PHROG	UHGV-0016964_5	phrog_5781	74.6	1.4e-21	N/A	unknown function
UniRef90	UHGV-0016964_5	UniRef90_A0A4S2AEU6	95.9	3.27e-23	N/A	N/A
eggNOG-mapper	UHGV-0016964_5	1095750.HMPREF9970_1671	69.7	0.000000000000035	N/A	N/A
Pfam	UHGV-0016964_5	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0016964_5	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0016964_5	PF14359,TIGR02133,COG3613	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016964_7	UniRef90_A0A3A9CS51	209.0	0	Sarcolemmal membrane-associated protein	N/A
eggNOG-mapper	UHGV-0016964_7	397287.C807_03474	216.0	0	N/A	N/A
eggNOG-mapper	UHGV-0016964_8	1235792.C808_01060	104.0	5.71e-29	N/A	N/A
structural_annotation	UHGV-0016964_10	PF08207	N/A	N/A	N/A	N/A
PHROG	UHGV-0016964_11	phrog_8841	501.3	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016964_11	UniRef90_UPI000C07D7A2	576.0	0	N/A	N/A
eggNOG-mapper	UHGV-0016964_11	742738.HMPREF9460_02495	484.0	0	N/A	N/A
Pfam	UHGV-0016964_11	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0016964_11	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0016964_11	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016964_11	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0016964_12	K02316	80.7	2e-23	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0016964_12	phrog_11992	132.9	2.2e-39	N/A	unknown function
UniRef90	UHGV-0016964_12	UniRef90_A0A372V3Z0	110.0	2.61e-27	ZnF_CHCC domain-containing protein	N/A
eggNOG-mapper	UHGV-0016964_12	1007096.BAGW01000023_gene150	101.0	1.06e-24	CHC2 zinc finger	N/A
PADLOC	UHGV-0016964_12	drt-cluster192	65.1	1.6e-18	DRT	DRT
Pfam	UHGV-0016964_12	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0016964_12	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0016964_12	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-0016964_13	phrog_3490	120.0	1.4e-35	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016964_13	UniRef90_UPI001177CD8A	115.0	9.38e-29	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0016964_13	1163671.JAGI01000002_gene1297	112.0	1.74e-28	ERCC4 domain	N/A
Pfam	UHGV-0016964_13	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0016964_13	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-0016964_14	phrog_18107	53.5	0.0000000000000017	N/A	unknown function
eggNOG-mapper	UHGV-0016964_14	903814.ELI_1274	159.0	0	N/A	N/A
structural_annotation	UHGV-0016964_14	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0016964_15	phrog_2872	192.4	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016964_15	UniRef90_UPI0011CB4DA4	265.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0016964_15	1345695.CLSA_c30180	242.0	0	AAA domain	N/A
Pfam	UHGV-0016964_15	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0016964_15	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
Pfam	UHGV-0016964_20	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0016964_20	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016964_23	UniRef90_R5Y7C3	127.0	5.98e-37	Toxin-antitoxin system antitoxin component Xre family	N/A
eggNOG-mapper	UHGV-0016964_23	1262914.BN533_00808	89.7	7.4e-23	N/A	N/A
Pfam	UHGV-0016964_23	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0016964_23	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0016964_23	PF05339,MF_00535,NF002773,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0016964_24	K01356	103.1	4e-30	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0016964_24	phrog_4	137.1	1.3e-40	transcriptional repressor	transcription regulation
UniRef90	UHGV-0016964_24	UniRef90_R5Y1G1	306.0	0	Putative phage repressor	N/A
eggNOG-mapper	UHGV-0016964_24	1262914.BN533_00809	141.0	3.58e-39	Peptidase S24-like	N/A
Pfam	UHGV-0016964_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0016964_24	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0016964_24	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0016964_24	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016964_26	UniRef90_UPI001EDE047F	137.0	2.35e-34	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0016964_26	1123263.AUKY01000072_gene2115	94.4	5.64e-20	N/A	N/A
structural_annotation	UHGV-0016964_26	PF06152	N/A	N/A	N/A	N/A
KOfam	UHGV-0016964_27	K14059	257.7	0	int; integrase	N/A
PHROG	UHGV-0016964_27	phrog_1	235.7	0	integrase	integration and excision
UniRef90	UHGV-0016964_27	UniRef90_A7VVX9	343.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0016964_27	428125.CLOLEP_02743	343.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0016964_27	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0016964_27	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0016964_27	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0016964_34	K21472	74.1	2.4e-21	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	N/A
PHROG	UHGV-0016964_34	phrog_7767	59.4	5.5e-17	metallo-endopeptidase	other
UniRef90	UHGV-0016964_34	UniRef90_R5A3T3	102.0	2.19e-23	NlpD	N/A
eggNOG-mapper	UHGV-0016964_34	1120998.AUFC01000030_gene2250	97.1	6.62e-22	heme binding	N/A
Pfam	UHGV-0016964_34	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0016964_34	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0016964_34	PF01551,PF01471,NF040883,COG0739,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0016964_35	phrog_1863	80.6	8.9e-24	N/A	unknown function
eggNOG-mapper	UHGV-0016964_35	693746.OBV_18260	100.0	9.02e-27	N/A	N/A
PHROG	UHGV-0016964_39	phrog_6616	135.0	4.6e-40	tail protein	tail
eggNOG-mapper	UHGV-0016964_39	445971.ANASTE_00088	140.0	4.76e-32	N/A	N/A
structural_annotation	UHGV-0016964_39	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0016964_40	phrog_1194	79.6	2.9e-23	N/A	unknown function
eggNOG-mapper	UHGV-0016964_40	257314.LJ_0323	55.5	0.000000041	N/A	N/A
structural_annotation	UHGV-0016964_40	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0016964_41	phrog_1535	257.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0016964_41	UniRef90_A0A1I1XW41	434.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0016964_41	717606.PaecuDRAFT_3132	414.0	0	Phage-related minor tail protein	N/A
COG	UHGV-0016964_41	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0016964_41	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0016964_42	phrog_8355	79.5	2.1e-23	N/A	unknown function
UniRef90	UHGV-0016964_42	UniRef90_UPI0018A7EA5D	55.5	0.000000081	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0016964_42	1123263.AUKY01000051_gene1072	60.1	0.000000000102	N/A	N/A
PHROG	UHGV-0016964_43	phrog_8300	94.9	5.5e-28	N/A	unknown function
eggNOG-mapper	UHGV-0016964_43	1507.HMPREF0262_00213	55.5	0.0000000179	N/A	N/A
structural_annotation	UHGV-0016964_43	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0016964_44	phrog_820	97.0	1.5e-28	major tail protein	tail
UniRef90	UHGV-0016964_44	UniRef90_R6DLA9	167.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0016964_44	1507.HMPREF0262_01184	122.0	1.4e-33	domain, Protein	N/A
COG	UHGV-0016964_44	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016964_44	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0016964_45	phrog_2595	71.6	9.1e-21	head-tail connector protein	connector
eggNOG-mapper	UHGV-0016964_45	1151292.QEW_2427	80.5	1.18e-17	N/A	N/A
Pfam	UHGV-0016964_45	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0016964_45	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0016964_46	phrog_556	54.9	0.0000000000000014	minor head protein	head and packaging
UniRef90	UHGV-0016964_46	UniRef90_UPI00058FDD53	99.8	1.4e-24	minor capsid protein	N/A
eggNOG-mapper	UHGV-0016964_46	86416.Clopa_0581	97.8	1.34e-24	N/A	N/A
PHROG	UHGV-0016964_47	phrog_8710	119.4	1.4e-35	N/A	unknown function
eggNOG-mapper	UHGV-0016964_47	663278.Ethha_1591	59.7	0.000000000545	N/A	N/A
structural_annotation	UHGV-0016964_47	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0016964_48	phrog_541	53.6	0.0000000000000037	head-tail adaptor	connector
eggNOG-mapper	UHGV-0016964_48	394503.Ccel_3289	63.9	0.0000000000204	N/A	N/A
PHROG	UHGV-0016964_49	phrog_422	264.3	0	major head protein	head and packaging
UniRef90	UHGV-0016964_49	UniRef90_R6DLA5	554.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0016964_49	663278.Ethha_1589	357.0	0	N/A	N/A
structural_annotation	UHGV-0016964_49	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0016964_50	phrog_2303	74.6	1.6e-21	head scaffolding protein	head and packaging
structural_annotation	UHGV-0016964_50	MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0016964_51	phrog_355	56.3	5e-16	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016964_51	UniRef90_UPI0005C7B1D7	99.4	5.81e-25	N/A	N/A
eggNOG-mapper	UHGV-0016964_51	999411.HMPREF1092_00897	105.0	3.53e-28	N/A	N/A
Pfam	UHGV-0016964_51	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0016964_51	PF14359	N/A	N/A	N/A	N/A
PHROG	UHGV-0016964_53	phrog_581	210.2	0	minor head protein	head and packaging
UniRef90	UHGV-0016964_53	UniRef90_R5A5Z0	349.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0016964_53	1151292.QEW_4396	265.0	0	COG3209 Rhs family protein	N/A
Pfam	UHGV-0016964_53	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0016964_53	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016964_53	PF06152,PF03496,NF041404	N/A	N/A	N/A	N/A
PHROG	UHGV-0016964_54	phrog_533	229.5	0	portal protein	head and packaging
UniRef90	UHGV-0016964_54	UniRef90_R6E386	597.0	0	Phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0016964_54	742740.HMPREF9474_03501	429.0	0	N/A	N/A
structural_annotation	UHGV-0016964_54	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0016964_55	K06909	93.3	2.9e-27	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0016964_55	phrog_2	64.6	2.1e-18	terminase large subunit	head and packaging
UniRef90	UHGV-0016964_55	UniRef90_A0A7V7BBW2	633.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0016964_55	742740.HMPREF9474_03500	573.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0016964_55	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0016964_55	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0016964_55	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0016964_56	phrog_2538	48.0	0.00000000000021	terminase small subunit	head and packaging
Pfam	UHGV-0016964_56	PF04297	N/A	N/A	Putative helix-turn-helix protein, YlxM / p13 like	UPF0122
structural_annotation	UHGV-0016964_56	PF13022,COG3677	N/A	N/A	N/A	N/A
PHROG	UHGV-0016964_57	phrog_20533	56.6	3.5e-16	N/A	unknown function
UniRef90	UHGV-0016964_57	UniRef90_A0A7C6U4T3	176.0	0	PLD phosphodiesterase domain-containing protein	N/A
eggNOG-mapper	UHGV-0016964_57	521097.Coch_0894	76.3	0.0000000000000107	N/A	N/A
structural_annotation	UHGV-0016964_57	PF17941,MF_01918,NF010490,COG3886	N/A	N/A	N/A	N/A
PHROG	UHGV-0016964_59	phrog_56	45.1	0.0000000000018	DNA methyltransferase	other
eggNOG-mapper	UHGV-0016964_59	1688.BCUN_0619	73.9	0.000000000000025	D12 class N6 adenine-specific DNA methyltransferase	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0016964	Yes	35,180	41	100	1