vOTU vOTU-042955

vOTU: vOTU-042955

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-042955
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger sp004555405
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-03306 → vGENUS-16022 → vSUBGEN-28451 → vOTU-042955
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger sp004555405
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0017315
Biosample ID	N/A
Genome length (bp)	39,101 bps
CheckV completeness	100.00% (Complete)
CDS count	49
CDS density	94.45%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger sp004555405	Total connections	22	Host agreement	95.45
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger sp004555405	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0017315_1	K07273	165.8	0	acm; lysozyme	N/A
PHROG	UHGV-0017315_1	phrog_291	142.3	4.1002e-42	endolysin	lysis
UniRef90	UHGV-0017315_1	UniRef90_UPI00195E5E78	199.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0017315_1	411471.SUBVAR_06927	195.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0017315_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0017315_1	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0017315_1	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0017315_5	phrog_24267	109.7	2.9e-32	N/A	unknown function
eggNOG-mapper	UHGV-0017315_5	742742.HMPREF9452_00376	137.0	7.09e-39	tail collar domain protein	N/A
COG	UHGV-0017315_5	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0017315_6	phrog_13589	185.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0017315_6	428125.CLOLEP_01434	250.0	0	N/A	N/A
PHROG	UHGV-0017315_7	phrog_31538	51.2	0.000000000000024	N/A	unknown function
eggNOG-mapper	UHGV-0017315_7	428125.CLOLEP_01433	75.5	1.33e-16	N/A	N/A
PHROG	UHGV-0017315_8	phrog_1084	42.1	0.000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0017315_8	665956.HMPREF1032_00696	137.0	1.60999e-40	N/A	N/A
structural_annotation	UHGV-0017315_8	PF16407,NF032891,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0017315_10	phrog_3287	137.4	9.49996e-41	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0017315_10	665956.HMPREF1032_03917	681.0	0	N/A	N/A
structural_annotation	UHGV-0017315_10	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-0017315_11	phrog_13046	70.2	2.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-0017315_11	693746.OBV_23880	94.0	4.81e-21	N/A	N/A
structural_annotation	UHGV-0017315_11	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0017315_13	phrog_371	138.4	2.59997e-41	major head protein	head and packaging
UniRef90	UHGV-0017315_13	UniRef90_A0A1Y4TDW7	437.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-0017315_13	1226322.HMPREF1545_03848	283.0	0	N/A	N/A
Pfam	UHGV-0017315_13	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-0017315_13	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0017315_14	phrog_24113	64.3	1.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-0017315_14	1226322.HMPREF1545_03847	62.0	0.000000000198	N/A	N/A
structural_annotation	UHGV-0017315_14	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0017315_17	phrog_156	160.4	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0017315_17	1519439.JPJG01000060_gene1886	311.0	0	N/A	N/A
structural_annotation	UHGV-0017315_17	PF12236,MF_04120,TIGR01542,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0017315_18	K06909	111.6	8.8e-33	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0017315_18	phrog_979	160.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0017315_18	UniRef90_UPI00164BD94B	502.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0017315_18	1408437.JNJN01000002_gene1397	442.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0017315_18	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0017315_18	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0017315_18	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0017315_19	K07483	41.6	0.000000000029	K07483; transposase	N/A
UniRef90	UHGV-0017315_19	UniRef90_UPI00195E9406	114.0	3.24e-28	transposase	N/A
Pfam	UHGV-0017315_19	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
PHROG	UHGV-0017315_21	phrog_37023	214.8	0	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017315_21	UniRef90_A0A3E2TEP1	199.0	0	N/A	N/A
eggNOG-mapper	UHGV-0017315_21	936573.HMPREF1147_1309	53.5	0.000000871	N/A	N/A
Pfam	UHGV-0017315_21	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0017315_21	PF06356,MF_04160,NF002584	N/A	N/A	N/A	N/A
PHROG	UHGV-0017315_22	phrog_3584	224.1	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017315_22	UniRef90_UPI001C02C5E0	239.0	0	N/A	N/A
eggNOG-mapper	UHGV-0017315_22	718252.FP2_16510	234.0	0	N/A	N/A
structural_annotation	UHGV-0017315_22	PF21578,NF033538	N/A	N/A	N/A	N/A
PHROG	UHGV-0017315_23	phrog_424	101.3	1.1e-29	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0017315_23	UniRef90_UPI001EDF1E9D	426.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0017315_23	693746.OBV_42570	353.0	0	N/A	N/A
PADLOC	UHGV-0017315_23	SspD_00001	63.6	5.4e-18	SspD	SSP
COG	UHGV-0017315_23	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0017315_23	PF01507,MF_00063,NF005316,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0017315_25	phrog_24518	85.1	6.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-0017315_26	665956.HMPREF1032_00140	159.0	1.4013e-45	Phosphoadenosine phosphosulfate reductase family	N/A
COG	UHGV-0017315_26	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
UniRef90	UHGV-0017315_27	UniRef90_A0A6N8GXT9	128.0	4.14e-37	Rubredoxin-like domain-containing protein	N/A
UniRef90	UHGV-0017315_32	UniRef90_UPI001956DCC9	64.7	0.00000000000242	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0017315_32	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017315_34	1507.HMPREF0262_00424	61.2	0.00000000292	Cro/C1-type HTH DNA-binding domain	N/A
COG	UHGV-0017315_34	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-0017315_35	936596.HMPREF1495_0309	71.2	0.00000000000626	Bacterial Ig-like domain (group 2)	N/A
COG	UHGV-0017315_35	COG5492	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017315_37	UniRef90_A0A810PZN0	102.0	1.18e-23	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0017315_37	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0017315_37	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0017315_37	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0017315_38	K14059	74.8	1.6e-21	int; integrase	N/A
PHROG	UHGV-0017315_38	phrog_1	114.1	1.6e-33	integrase	integration and excision
UniRef90	UHGV-0017315_38	UniRef90_A0A2N2CRL9	263.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0017315_38	693746.OBV_43340	238.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0017315_38	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0017315_38	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0017315_38	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0017315_39	phrog_28802	47.4	0.00000000000037	N/A	unknown function
structural_annotation	UHGV-0017315_39	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0017315_40	phrog_20016	216.3	0	N/A	unknown function
UniRef90	UHGV-0017315_40	UniRef90_A0A285PT46	199.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0017315_40	1226322.HMPREF1545_00077	199.0	0	N/A	N/A
structural_annotation	UHGV-0017315_40	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0017315_41	phrog_16490	173.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0017315_41	397290.C810_05212	115.0	2.12e-28	N/A	N/A
PHROG	UHGV-0017315_42	phrog_22984	77.5	8.4e-23	N/A	unknown function
PHROG	UHGV-0017315_43	phrog_21718	107.3	1.1e-31	N/A	unknown function
eggNOG-mapper	UHGV-0017315_43	397290.C810_05210	89.4	6.54e-21	N/A	N/A
PHROG	UHGV-0017315_44	phrog_3754	90.7	1.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-0017315_44	476272.RUMHYD_01764	154.0	0	N/A	N/A
structural_annotation	UHGV-0017315_45	PF07638,MF_00674,TIGR02954,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0017315_46	phrog_22978	443.1	0	N/A	unknown function
UniRef90	UHGV-0017315_46	UniRef90_E2ZIB5	679.0	0	Putative septum site-determining protein MinC	N/A
eggNOG-mapper	UHGV-0017315_46	748224.HMPREF9436_01406	679.0	0	N/A	N/A
Pfam	UHGV-0017315_46	PF18838	N/A	N/A	Large polyvalent protein associated domain 23	LPD23
Pfam	UHGV-0017315_46	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
PHROG	UHGV-0017315_48	phrog_199	96.4	3e-28	holin	lysis
UniRef90	UHGV-0017315_48	UniRef90_A0A5K7X378	117.0	2.39e-31	Holin	N/A
eggNOG-mapper	UHGV-0017315_48	359961.Q2LIG9_9CAUD	111.0	1.09e-29	Pfam:Phage_holin_4_1	N/A
Pfam	UHGV-0017315_48	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0017315_48	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-0017315_48	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0017315	Yes	39,101	54	100	1