vOTU vOTU-043299

vOTU: vOTU-043299

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-043299
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00040 → vSUBFAM-00520 → vGENUS-00507 → vSUBGEN-17974 → vOTU-043299
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae
Host range breadth	Family
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0021534
Biosample ID	N/A
Genome length (bp)	41,498 bps
CheckV completeness	100.00% (Complete)
CDS count	64
CDS density	87.84%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	14	Host agreement	85.71
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → MGYG000003978	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
dbAPIS	UHGV-0021534_1	APIS008	N/A	N/A	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	N/A
PHROG	UHGV-0021534_2	phrog_954	206.2	0	DNA methyltransferase	other
UniRef90	UHGV-0021534_2	UniRef90_A0A810Q0N4	303.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0021534_2	1280698.AUJS01000007_gene1028	277.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0021534_2	MTase_II_00074	200.9	0	Type II methyltransferase	RM
Pfam	UHGV-0021534_2	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0021534_2	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0021534_2	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
KOfam	UHGV-0021534_8	K03091	81.3	1.7e-23	sigH; RNA polymerase sporulation-specific sigma factor	N/A
Pfam	UHGV-0021534_8	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-0021534_8	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
NCBIFam	UHGV-0021534_8	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0021534_8	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0021534_8	PF00196,MF_00959,NF006158,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-0021534_9	K01520	166.9	0	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0021534_9	phrog_135	133.1	1.5e-39	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021534_9	UniRef90_UPI001873736C	192.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0021534_9	1282887.AUJG01000016_gene1113	156.0	0	N/A	N/A
Pfam	UHGV-0021534_9	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0021534_9	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0021534_9	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0021534_9	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-0021534_10	phrog_374	41.0	0.000000000033	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0021534_10	1121405.dsmv_2591	57.4	0.0000000408	N/A	N/A
Pfam	UHGV-0021534_12	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
UniRef90	UHGV-0021534_13	UniRef90_A0A7M1Q4S5	59.7	0.000000000127	Ribbon-helix-helix protein, CopG family	N/A
eggNOG-mapper	UHGV-0021534_13	478749.BRYFOR_07643	49.3	0.000000277	N/A	N/A
structural_annotation	UHGV-0021534_13	PF12651,NF041793,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-0021534_15	K07741	101.4	2.3e-29	antB; anti-repressor protein	N/A
PHROG	UHGV-0021534_15	phrog_130	164.0	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0021534_15	UniRef90_A0A1Y4RA31	308.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0021534_15	469618.FVAG_00765	241.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-0021534_15	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0021534_15	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0021534_15	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0021534_16	UniRef90_A0A810QFN4	432.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0021534_16	693746.OBV_01590	328.0	0	N/A	N/A
Pfam	UHGV-0021534_16	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
eggNOG-mapper	UHGV-0021534_17	693746.OBV_01600	72.8	0.0000000000286	N/A	N/A
PHROG	UHGV-0021534_18	phrog_20388	91.8	7.4e-27	endolysin	lysis
UniRef90	UHGV-0021534_18	UniRef90_UPI00189D4A1D	101.0	3.21e-22	phage tail tip lysozyme	N/A
eggNOG-mapper	UHGV-0021534_18	1203606.HMPREF1526_00253	106.0	1.32e-23	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0021534_18	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0021534_18	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0021534_18	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0021534_18	PF18013,PF01471,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0021534_19	phrog_30034	117.4	1.5e-34	N/A	unknown function
UniRef90	UHGV-0021534_19	UniRef90_A0A2Y9CAD1	153.0	2.8026e-45	Carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0021534_19	411460.RUMTOR_02099	134.0	4.05e-37	N/A	N/A
Pfam	UHGV-0021534_19	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0021534_19	PF14600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021534_22	PF21253,PF07210,NF038128,TIGR03000,COG2512	N/A	N/A	N/A	N/A
PHROG	UHGV-0021534_23	phrog_892	56.5	3e-28	tail fiber protein	tail
eggNOG-mapper	UHGV-0021534_23	1408422.JHYF01000026_gene3527	93.2	2.09e-20	nuclear chromosome segregation	N/A
COG	UHGV-0021534_23	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0021534_24	phrog_5107	42.1	0.0000000000068	amidase	lysis
UniRef90	UHGV-0021534_24	UniRef90_A0A4D7ASB8	513.0	0	N/A	N/A
eggNOG-mapper	UHGV-0021534_24	1519439.JPJG01000011_gene54	518.0	0	N/A	N/A
structural_annotation	UHGV-0021534_24	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021534_25	PF16677	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0021534_26	1519439.JPJG01000011_gene57	123.0	5.12e-34	N/A	N/A
structural_annotation	UHGV-0021534_26	PF11650	N/A	N/A	N/A	N/A
PHROG	UHGV-0021534_27	phrog_1129	62.5	5.1e-18	holin	lysis
UniRef90	UHGV-0021534_27	UniRef90_A0A0D8J2M2	118.0	6.65e-33	Enolase	N/A
eggNOG-mapper	UHGV-0021534_27	665956.HMPREF1032_03272	116.0	6.26e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0021534_27	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0021534_27	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0021534_28	phrog_1863	67.4	1.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0021534_28	748224.HMPREF9436_01412	89.0	1.76e-22	N/A	N/A
PHROG	UHGV-0021534_29	phrog_422	124.5	7.7e-37	major head protein	head and packaging
UniRef90	UHGV-0021534_29	UniRef90_A0A8J6JH37	293.0	0	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0021534_29	693746.OBV_01700	216.0	0	N/A	N/A
Pfam	UHGV-0021534_29	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-0021534_29	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0021534_31	phrog_156	91.0	4.1e-28	portal protein	head and packaging
eggNOG-mapper	UHGV-0021534_31	693746.OBV_01670	536.0	0	N/A	N/A
structural_annotation	UHGV-0021534_31	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0021534_33	phrog_5653	40.7	0.0000000000014	terminase large subunit	head and packaging
UniRef90	UHGV-0021534_33	UniRef90_A0A1Y3RJJ5	238.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0021534_33	693746.OBV_01690	214.0	0	phage Terminase large subunit	N/A
COG	UHGV-0021534_33	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0021534_33	PF20441,MF_04148,TIGR01547,COG5323	N/A	N/A	N/A	N/A
PHROG	UHGV-0021534_34	phrog_374	157.3	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021534_34	UniRef90_A0A6L8SWJ4	141.0	5.15e-39	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0021534_34	742767.HMPREF9456_02044	150.0	2.11596e-43	N/A	N/A
PHROG	UHGV-0021534_35	phrog_979	49.0	0.000000000000068	terminase large subunit	head and packaging
UniRef90	UHGV-0021534_35	UniRef90_K1TA53	121.0	3.55e-32	Phage terminase, large subunit, PBSX (Fragment)	N/A
eggNOG-mapper	UHGV-0021534_35	693746.OBV_01690	129.0	6.52e-34	phage Terminase large subunit	N/A
COG	UHGV-0021534_35	COG1783	N/A	N/A	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0021534_36	1378168.N510_01472	61.2	0.00000000000269	N/A	N/A
eggNOG-mapper	UHGV-0021534_38	1504823.CCMM01000008_gene725	45.8	0.00000784	N/A	N/A
structural_annotation	UHGV-0021534_38	PF10723	N/A	N/A	N/A	N/A
PHROG	UHGV-0021534_39	phrog_15863	152.7	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0021534_39	UniRef90_A0A1Y3R3M0	231.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0021534_39	693746.OBV_01780	175.0	0	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0021534_39	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
structural_annotation	UHGV-0021534_41	PF17917	N/A	N/A	N/A	N/A
UniRef90	UHGV-0021534_44	UniRef90_A0A7M1RTM1	70.5	0.00000000000566	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0021534_44	1408437.JNJN01000043_gene801	73.6	0.0000000000000662	N/A	N/A
KOfam	UHGV-0021534_45	K14059	109.1	6.8e-32	int; integrase	N/A
PHROG	UHGV-0021534_45	phrog_1	123.8	1.9e-36	integrase	integration and excision
UniRef90	UHGV-0021534_45	UniRef90_A0A3D2G173	328.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0021534_45	585506.HMPREF0877_0281	63.2	0.0000000276	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0021534_45	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0021534_45	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0021534_45	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0021534_46	UniRef90_UPI0008F8DDFE	63.9	0.000000000164	helix-turn-helix domain-containing protein	N/A
COG	UHGV-0021534_46	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0021534_46	NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0021534_50	phrog_4652	108.9	2.3e-32	N/A	unknown function
eggNOG-mapper	UHGV-0021534_50	397290.C810_01459	241.0	0	N/A	N/A
structural_annotation	UHGV-0021534_50	TIGR02582	N/A	N/A	N/A	N/A
PHROG	UHGV-0021534_51	phrog_15946	69.1	5.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0021534_51	1041147.AUFB01000014_gene330	82.4	9.53e-18	N/A	N/A
KOfam	UHGV-0021534_52	K22300	52.8	0.0000000000000095	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0021534_52	phrog_7241	41.1	0.000000000028	transcriptional regulator	transcription regulation
UniRef90	UHGV-0021534_52	UniRef90_A0A644YPM1	62.8	0.0000000000192	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0021534_52	411467.BACCAP_02820	49.7	0.00000731	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0021534_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0021534_52	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
Pfam	UHGV-0021534_53	PF00325	N/A	N/A	Bacterial regulatory proteins, crp family	Crp
structural_annotation	UHGV-0021534_53	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0021534_58	phrog_298	80.9	4.5e-24	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021534_58	UniRef90_A0A0G1W598	57.0	0.00000186	PDDEXK_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0021534_58	1218075.BAYA01000003_gene606	78.2	0.00000000000000374	N/A	N/A
structural_annotation	UHGV-0021534_58	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0021534_59	phrog_561	127.7	3.1e-38	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021534_59	UniRef90_A0A174RC35	228.0	0	RecT family	N/A
eggNOG-mapper	UHGV-0021534_59	33035.JPJF01000071_gene4462	155.0	7.00649e-45	N/A	N/A
Pfam	UHGV-0021534_59	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-0021534_59	PF03837,TIGR01913	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021534_61	PF08962	N/A	N/A	N/A	N/A
PHROG	UHGV-0021534_62	phrog_2562	122.8	3.6e-36	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021534_62	UniRef90_UPI00189A2195	194.0	0	N/A	N/A
eggNOG-mapper	UHGV-0021534_62	1235790.C805_00030	179.0	0	N/A	N/A
Pfam	UHGV-0021534_62	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0021534_62	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0021534_63	phrog_1770	103.0	2.9e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021534_63	UniRef90_A0A1L8CM45	103.0	1.28e-25	Crossover junction endodeoxyribonuclease RuvC	N/A
eggNOG-mapper	UHGV-0021534_63	994601.G9BW80_9CAUD	97.8	6.6e-24	nucleic acid binding	N/A
structural_annotation	UHGV-0021534_63	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0021534	Yes	41,498	52	100	1