vOTU vOTU-043358

vOTU: vOTU-043358

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-043358
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-04598 → vGENUS-08134 → vSUBGEN-07501 → vOTU-043358
Host lineage	Bacteria → Verrucomicrobiota → Kiritimatiellae → RFP12 → UBA1067 → UBA1067 → ERR7738598_bin.221
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0022342
Biosample ID	SAMEA4765641
Genome length (bp)	45,026 bps
CheckV completeness	100.00% (Complete)
CDS count	65
CDS density	95.99%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Verrucomicrobiota → Kiritimatiellae → RFP12 → UBA1067 → UBA1067 → ERR7738598_bin.221	Total connections	1	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0022342_2	phrog_30034	113.1	3.1e-33	N/A	unknown function
UniRef90	UHGV-0022342_2	UniRef90_C6LG78	102.0	3.63e-25	Carbohydrate binding domain protein	N/A
eggNOG-mapper	UHGV-0022342_2	478749.BRYFOR_07638	102.0	6.09e-26	N/A	N/A
Pfam	UHGV-0022342_2	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
eggNOG-mapper	UHGV-0022342_3	97138.C820_00248	47.4	0.00000529	N/A	N/A
eggNOG-mapper	UHGV-0022342_5	642492.Clole_0840	85.9	7.38e-21	N/A	N/A
KOfam	UHGV-0022342_6	K07273	168.5	0	acm; lysozyme	N/A
PHROG	UHGV-0022342_6	phrog_291	142.0	5.29971e-42	endolysin	lysis
UniRef90	UHGV-0022342_6	UniRef90_A0A1C6ACC3	153.0	4.69996e-41	Lysozyme M1	N/A
eggNOG-mapper	UHGV-0022342_6	1304880.JAGB01000002_gene2202	133.0	2.75e-34	Glycosyl hydrolase, family 25	N/A
Pfam	UHGV-0022342_6	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0022342_6	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0022342_6	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0022342_7	phrog_1899	65.2	2.5e-27	N/A	unknown function
UniRef90	UHGV-0022342_7	UniRef90_UPI00110693DB	72.0	0.000000000192	gp58-like family protein	N/A
eggNOG-mapper	UHGV-0022342_7	1226322.HMPREF1545_00783	70.9	0.000000000114	Chaperone of endosialidase	N/A
Pfam	UHGV-0022342_7	PF07902	N/A	N/A	gp58-like protein	Gp58
PHROG	UHGV-0022342_8	phrog_37329	66.2	4.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-0022342_8	1227349.C170_22575	68.9	0.0000000000245	Fibronectin type 3 domain	N/A
COG	UHGV-0022342_8	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0022342_8	PF17166,NF038367,COG2033	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022342_10	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0022342_11	phrog_511	228.2	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0022342_11	1226322.HMPREF1545_00785	424.0	0	N/A	N/A
structural_annotation	UHGV-0022342_11	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0022342_12	1226322.HMPREF1545_00786	145.0	5.28e-35	N/A	N/A
PHROG	UHGV-0022342_13	phrog_22978	53.8	7.6e-16	N/A	unknown function
eggNOG-mapper	UHGV-0022342_13	1408437.JNJN01000039_gene389	503.0	0	heme binding	N/A
Pfam	UHGV-0022342_13	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
COG	UHGV-0022342_13	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
KOfam	UHGV-0022342_14	K06400	378.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0022342_14	phrog_95	360.8	0	integrase	integration and excision
UniRef90	UHGV-0022342_14	UniRef90_UPI00068AC759	483.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0022342_14	1235835.C814_00825	484.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0022342_14	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0022342_14	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0022342_14	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0022342_14	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0022342_14	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0022342_15	1395513.P343_08200	58.5	0.000000047	PFAM TadE family protein	N/A
COG	UHGV-0022342_15	COG4961	N/A	N/A	Flp pilus assembly protein TadG, includes N-terminal TadE domain	N/A
eggNOG-mapper	UHGV-0022342_16	1410670.JHXF01000016_gene2191	65.1	0.0000000000648	N/A	N/A
KOfam	UHGV-0022342_17	K07729	56.6	5.7e-16	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0022342_17	phrog_3	41.0	0.000000000069	transcriptional repressor	transcription regulation
UniRef90	UHGV-0022342_17	UniRef90_A0A3E2BL89	60.5	0.000000000115	Transcriptional regulator, Cro/CI family	N/A
eggNOG-mapper	UHGV-0022342_17	521045.Kole_0608	50.8	0.0000000893	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0022342_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0022342_17	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-0022342_19	K22300	56.6	5.9e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0022342_19	phrog_8	45.9	0.0000000000003	transcriptional regulator	transcription regulation
UniRef90	UHGV-0022342_19	UniRef90_A0A412UWP1	96.7	2.8e-23	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0022342_19	445972.ANACOL_03315	84.7	2.07e-19	N/A	N/A
Pfam	UHGV-0022342_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0022342_19	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0022342_19	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0022342_20	796940.HMPREF9628_01560	46.6	0.00000447	N/A	N/A
Pfam	UHGV-0022342_20	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
PHROG	UHGV-0022342_30	phrog_15609	86.4	2.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-0022342_30	1007103.AFHW01000034_gene1992	62.4	0.0000000406	N/A	N/A
structural_annotation	UHGV-0022342_30	PF11300,NF038070	N/A	N/A	N/A	N/A
KOfam	UHGV-0022342_31	K13583	42.4	0.000000000011	gcrA; GcrA cell cycle regulator	N/A
PHROG	UHGV-0022342_31	phrog_474	104.1	2.3e-30	phosphofructokinase	other
eggNOG-mapper	UHGV-0022342_31	1203606.HMPREF1526_00237	95.1	9.35e-22	N/A	N/A
Pfam	UHGV-0022342_31	PF07750	N/A	N/A	GcrA cell cycle regulator	GcrA
Pfam	UHGV-0022342_31	PF19905	N/A	N/A	N/A	DUF6378
eggNOG-mapper	UHGV-0022342_32	1408324.JNJK01000014_gene1982	105.0	7.06e-25	N/A	N/A
structural_annotation	UHGV-0022342_36	COG3460	N/A	N/A	N/A	N/A
PHROG	UHGV-0022342_40	phrog_1374	49.0	0.000000000000071	N/A	unknown function
UniRef90	UHGV-0022342_40	UniRef90_A0A482JLT4	53.9	0.0000000634	Putative membrane protein	N/A
COG	UHGV-0022342_40	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0022342_41	phrog_918	120.1	6.3e-36	N/A	unknown function
UniRef90	UHGV-0022342_41	UniRef90_UPI001D020797	106.0	3.68e-28	N/A	N/A
eggNOG-mapper	UHGV-0022342_41	1042156.CXIVA_01830	105.0	7.83e-29	N/A	N/A
Pfam	UHGV-0022342_41	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0022342_41	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0022342_48	phrog_3584	201.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0022342_48	525254.HMPREF0072_1311	170.0	0	N/A	N/A
structural_annotation	UHGV-0022342_48	PF21578,NF033538	N/A	N/A	N/A	N/A
PHROG	UHGV-0022342_49	phrog_323	40.3	0.0000000000079	endonuclease	DNA, RNA and nucleotide metabolism
PHROG	UHGV-0022342_50	phrog_824	141.9	1.80067e-42	N/A	unknown function
UniRef90	UHGV-0022342_50	UniRef90_UPI001B399ABB	155.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0022342_50	1414720.CBYM010000002_gene588	146.0	1.27518e-43	VRR-NUC domain	N/A
Pfam	UHGV-0022342_50	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
KOfam	UHGV-0022342_51	K03111	141.1	1.29998e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0022342_51	phrog_44	137.0	1.3e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022342_51	UniRef90_R7EVC4	173.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0022342_51	1392491.JIAE01000001_gene2290	130.0	1.73e-36	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0022342_51	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0022342_51	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0022342_51	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0022342_51	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0022342_51	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-0022342_53	UniRef90_A0A3D0M2U4	63.5	0.000000000442	RHH_1 domain-containing protein	N/A
structural_annotation	UHGV-0022342_53	PF16734,PF01402	N/A	N/A	N/A	N/A
PHROG	UHGV-0022342_57	phrog_606	42.4	0.0000000000089	terminase small subunit	head and packaging
eggNOG-mapper	UHGV-0022342_57	1226322.HMPREF1545_03842	87.8	9.81e-19	DNA-packaging protein gp3	N/A
KOfam	UHGV-0022342_58	K06909	225.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0022342_58	phrog_3717	199.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0022342_58	UniRef90_UPI001105ADB4	596.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0022342_58	1226322.HMPREF1545_03843	573.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-0022342_58	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0022342_58	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0022342_58	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0022342_58	PF04466,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0022342_59	phrog_156	279.5	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0022342_59	1519439.JPJG01000060_gene1886	556.0	0	N/A	N/A
structural_annotation	UHGV-0022342_59	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0022342_60	phrog_21498	278.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0022342_60	78346.BRUM_0376	244.0	0	DNA binding	N/A
COG	UHGV-0022342_60	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0022342_60	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-0022342_62	phrog_35275	140.4	1.19993e-41	N/A	unknown function
eggNOG-mapper	UHGV-0022342_62	1226322.HMPREF1545_03846	110.0	4.29e-25	N/A	N/A
PHROG	UHGV-0022342_63	phrog_24113	120.8	5.3e-36	N/A	unknown function
eggNOG-mapper	UHGV-0022342_63	1226322.HMPREF1545_03847	110.0	2.78e-29	N/A	N/A
structural_annotation	UHGV-0022342_63	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0022342_64	phrog_371	147.0	1.20512e-43	major head protein	head and packaging
UniRef90	UHGV-0022342_64	UniRef90_R6TFU9	308.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-0022342_64	1226322.HMPREF1545_03848	380.0	0	N/A	N/A
Pfam	UHGV-0022342_64	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-0022342_64	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0022342_65	K24214	51.8	0.0000000000000066	OTOL1; otolin-1	N/A
PHROG	UHGV-0022342_65	phrog_12105	101.6	4.1e-30	N/A	unknown function
eggNOG-mapper	UHGV-0022342_65	1226322.HMPREF1545_03850	95.9	7.38e-22	N/A	N/A
Pfam	UHGV-0022342_65	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0022342	Yes	45,026	56	100	1
UHGV-0018591	No	44,891	55	97	1