vOTU vOTU-043366

vOTU: vOTU-043366

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-043366
Number of genomes	3
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00160 → vGENUS-00101 → vSUBGEN-26020 → vOTU-043366
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp000765235
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0022502
Biosample ID	N/A
Genome length (bp)	43,093 bps
CheckV completeness	100.00% (Complete)
CDS count	59
CDS density	91.30%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp000765235	Total connections	340	Host agreement	80.59
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0022502_2	K06236	182.5	0	COL1A; collagen type I alpha	N/A
PHROG	UHGV-0022502_2	phrog_3420	105.3	1.8e-38	N/A	unknown function
UniRef90	UHGV-0022502_2	UniRef90_UPI00068BE71D	380.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0022502_2	1519439.JPJG01000060_gene1892	380.0	0	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0022502_2	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0022502_2	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0022502_2	PF10651,NF033814	N/A	N/A	N/A	N/A
PHROG	UHGV-0022502_3	phrog_15239	74.9	8.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0022502_3	1449126.JQKL01000003_gene1694	51.2	0.000000911	N/A	N/A
PHROG	UHGV-0022502_4	phrog_1357	254.8	0	major head protein	head and packaging
UniRef90	UHGV-0022502_4	UniRef90_A0A8D9UH64	507.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0022502_4	1449126.JQKL01000003_gene1695	453.0	0	N/A	N/A
Pfam	UHGV-0022502_4	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0022502_4	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0022502_4	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0022502_5	phrog_13908	257.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0022502_5	1410650.JHWL01000003_gene2831	98.2	1.52e-20	N/A	N/A
structural_annotation	UHGV-0022502_6	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0022502_7	phrog_156	317.7	0	portal protein	head and packaging
UniRef90	UHGV-0022502_7	UniRef90_A0A8D9UH10	681.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0022502_7	748224.HMPREF9436_01396	484.0	0	N/A	N/A
structural_annotation	UHGV-0022502_7	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0022502_8	K06909	102.7	4.6e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0022502_8	phrog_979	150.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0022502_8	UniRef90_A0A1Y4WJ48	706.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0022502_8	718252.FP2_29190	557.0	0	Terminase-like family	N/A
Pfam	UHGV-0022502_8	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0022502_8	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0022502_8	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0022502_9	phrog_606	82.1	6.7e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0022502_9	UniRef90_UPI00195648BB	174.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0022502_9	397290.C810_05185	153.0	2.8026e-45	DNA-packaging protein gp3	N/A
Pfam	UHGV-0022502_9	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0022502_9	PF16677	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0022502_11	445972.ANACOL_00168	48.1	0.00000177	N/A	N/A
PHROG	UHGV-0022502_14	phrog_22543	56.3	5.8e-16	N/A	unknown function
UniRef90	UHGV-0022502_14	UniRef90_A0A8D9PDT5	139.0	1.57e-40	Hydrogenase/urease nickel incorporation protein	N/A
UniRef90	UHGV-0022502_16	UniRef90_A0A098GES5	90.5	1.1e-21	Putative phage associated protein	N/A
structural_annotation	UHGV-0022502_16	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
PHROG	UHGV-0022502_17	phrog_27610	52.1	0.0000000000000067	N/A	unknown function
PHROG	UHGV-0022502_18	phrog_111	154.3	0	DNA methyltransferase	other
UniRef90	UHGV-0022502_18	UniRef90_UPI000F065B6D	215.0	0	adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0022502_18	1450694.BTS2_0497	188.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0022502_18	oMTase_00015	197.7	0	orphan methyltransferase	RM
Pfam	UHGV-0022502_18	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0022502_18	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
Pfam	UHGV-0022502_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0022502_19	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0022502_19	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022502_20	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0022502_21	K22299	40.5	5.4e-18	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0022502_21	phrog_8	71.4	2.9e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0022502_21	UniRef90_R7JEQ3	54.7	0.000000613	Transcriptional regulator XRE family	N/A
eggNOG-mapper	UHGV-0022502_21	857293.CAAU_0901	52.8	0.000000691	helix-turn-helix	N/A
PADLOC	UHGV-0022502_21	retron_type_VI_hth_cluster2_1	43.8	1.8e-17	N/A	Retron
Pfam	UHGV-0022502_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0022502_21	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0022502_21	PF01381,PF13744,NF041951,COG3655,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-0022502_23	phrog_190	120.8	9.7e-36	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022502_23	UniRef90_A0A8D9PDD6	132.0	7.88e-37	Endonuclease	N/A
eggNOG-mapper	UHGV-0022502_23	1226322.HMPREF1545_00295	125.0	2.31e-34	N/A	N/A
Pfam	UHGV-0022502_23	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0022502_23	PF06356	N/A	N/A	N/A	N/A
UniRef90	UHGV-0022502_26	UniRef90_A0A8D9PDS1	77.4	4.81e-16	Replisome organizer	N/A
eggNOG-mapper	UHGV-0022502_26	1121344.JHZO01000003_gene981	61.2	0.000000000447	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0022502_26	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0022502_26	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0022502_27	phrog_2562	154.6	1.4013e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022502_27	UniRef90_A0A3A6E2X3	258.0	0	N/A	N/A
eggNOG-mapper	UHGV-0022502_27	445971.ANASTE_00700	167.0	0	N/A	N/A
Pfam	UHGV-0022502_27	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0022502_27	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0022502_27	PF14297	N/A	N/A	N/A	N/A
KOfam	UHGV-0022502_28	K03111	113.6	2.9e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0022502_28	phrog_44	113.8	1.7e-33	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022502_28	UniRef90_G4L1H2	139.0	5.11999e-40	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0022502_28	693746.OBV_19910	139.0	8.58996e-41	Single-strand binding protein family	N/A
Pfam	UHGV-0022502_28	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0022502_28	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0022502_28	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0022502_28	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0022502_28	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0022502_29	K07455	291.7	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0022502_29	phrog_148	276.4	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022502_29	UniRef90_U2SBP2	433.0	0	Recombination and repair protein RecT	N/A
eggNOG-mapper	UHGV-0022502_29	1226322.HMPREF1545_00015	433.0	0	RecT family	N/A
Pfam	UHGV-0022502_29	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0022502_29	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0022502_29	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0022502_29	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0022502_30	phrog_434	283.1	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022502_30	UniRef90_U2SK35	417.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0022502_30	1226322.HMPREF1545_00014	417.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0022502_30	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0022502_30	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0022502_30	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0022502_30	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022502_32	PF11112,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0022502_33	UniRef90_A0A413FWV9	52.8	0.000000322	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0022502_33	411459.RUMOBE_01022	55.1	0.00000000665	sequence-specific DNA binding	N/A
Pfam	UHGV-0022502_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0022502_33	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0022502_33	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0022502_34	742738.HMPREF9460_02485	55.1	0.000000266	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0022502_34	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0022502_34	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0022502_34	PF01381,MF_00535,NF041951,TIGR02607,COG3655,COG3093	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022502_36	PF10754	N/A	N/A	N/A	N/A
UniRef90	UHGV-0022502_37	UniRef90_A0A354UMM3	52.4	0.00000596	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0022502_37	1280676.AUJO01000016_gene1107	52.4	0.00000386	Putative restriction endonuclease	N/A
Pfam	UHGV-0022502_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0022502_37	COG4636	N/A	N/A	Endonuclease, Uma2 family (restriction endonuclease fold)	N/A
structural_annotation	UHGV-0022502_37	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0022502_38	K14059	149.3	4.2039e-44	int; integrase	N/A
PHROG	UHGV-0022502_38	phrog_1	151.6	5.60519e-45	integrase	integration and excision
UniRef90	UHGV-0022502_38	UniRef90_A0A1C5W824	545.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0022502_38	693746.OBV_41260	298.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0022502_38	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0022502_38	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0022502_38	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022502_41	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0022502_42	phrog_16490	57.8	2.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-0022502_42	476272.RUMHYD_01770	53.9	0.00000363	N/A	N/A
PHROG	UHGV-0022502_43	phrog_22984	52.2	0.000000000000011	N/A	unknown function
UniRef90	UHGV-0022502_46	UniRef90_A0A096AZ46	133.0	3.67e-37	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0022502_46	742738.HMPREF9460_04059	133.0	6.15e-38	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0022502_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0022502_46	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0022502_46	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0022502_48	K17733	93.3	2.6e-27	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0022502_48	phrog_6523	68.8	1e-19	endolysin	lysis
UniRef90	UHGV-0022502_48	UniRef90_R5RXG6	221.0	0	Serine-type D-Ala-D-Ala carboxypeptidase	N/A
eggNOG-mapper	UHGV-0022502_48	1519439.JPJG01000023_gene536	215.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-0022502_48	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-0022502_48	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-0022502_48	PF02557,MF_01924,NF000380,COG1876	N/A	N/A	N/A	N/A
PHROG	UHGV-0022502_49	phrog_13256	65.1	6.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0022502_49	1226322.HMPREF1545_00132	77.4	7.13e-18	N/A	N/A
PHROG	UHGV-0022502_51	phrog_937	44.3	0.0000000000034	hemolysin	other
eggNOG-mapper	UHGV-0022502_51	1519439.JPJG01000023_gene533	72.0	0.00000000000000384	N/A	N/A
PHROG	UHGV-0022502_52	phrog_22978	797.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0022502_52	1519439.JPJG01000060_gene1905	477.0	0	N/A	N/A
eggNOG-mapper	UHGV-0022502_53	1203606.HMPREF1526_02741	106.0	3.78e-23	N/A	N/A
PHROG	UHGV-0022502_54	phrog_511	189.5	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0022502_54	1226322.HMPREF1545_00785	440.0	0	N/A	N/A
structural_annotation	UHGV-0022502_54	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0022502_56	phrog_7121	71.2	3.9e-21	tail fiber protein	tail
UniRef90	UHGV-0022502_56	UniRef90_R5ACE5	100.0	1.63e-19	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0022502_56	1226322.HMPREF1545_00783	92.4	1.16e-17	Chaperone of endosialidase	N/A
Pfam	UHGV-0022502_56	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0022502_56	PF07902,NF041249	N/A	N/A	N/A	N/A
PHROG	UHGV-0022502_57	phrog_12105	56.7	4.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-0022502_57	1519439.JPJG01000060_gene1891	55.5	0.00000004	N/A	N/A
PHROG	UHGV-0022502_58	phrog_27545	154.1	0	N/A	unknown function
UniRef90	UHGV-0022502_58	UniRef90_A0A2V2GQB6	161.0	0	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0022502_58	1519439.JPJG01000060_gene1895	295.0	0	N/A	N/A
Pfam	UHGV-0022502_58	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0022502_58	PF16170	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0022502	Yes	43,093	57	100	1
UHGV-0032413	No	43,003	57	100	1
UHGV-0018855	No	24,189	59	56	1