vOTU vOTU-043438

vOTU: vOTU-043438

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-043438
Number of genomes	2
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00124 → vGENUS-02529 → vSUBGEN-04229 → vOTU-043438
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0023313
Biosample ID	SAMEA4766043
Genome length (bp)	41,096 bps
CheckV completeness	100.00% (Complete)
CDS count	65
CDS density	90.42%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	267	Host agreement	98.88
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0023313_1	PF16509,TIGR03209,COG2739	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023313_2	UniRef90_UPI0013C3FC23	47.8	0.00000999	chromate transporter	N/A
eggNOG-mapper	UHGV-0023313_2	1304866.K413DRAFT_4686	84.3	6.3e-21	N/A	N/A
UniRef90	UHGV-0023313_3	UniRef90_A0A1Q9JGI6	56.2	0.000000225	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0023313_3	1033733.CAEK01000007_gene1628	75.1	0.00000000000000215	N/A	N/A
structural_annotation	UHGV-0023313_3	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
PHROG	UHGV-0023313_7	phrog_16490	105.4	2.2e-39	N/A	unknown function
eggNOG-mapper	UHGV-0023313_7	1408437.JNJN01000043_gene803	163.0	0	N/A	N/A
eggNOG-mapper	UHGV-0023313_8	1408437.JNJN01000043_gene802	123.0	1.11e-34	N/A	N/A
eggNOG-mapper	UHGV-0023313_9	1408437.JNJN01000043_gene801	96.3	6.13e-22	N/A	N/A
KOfam	UHGV-0023313_10	K14059	186.5	0	int; integrase	N/A
PHROG	UHGV-0023313_10	phrog_1	175.8	0	integrase	integration and excision
UniRef90	UHGV-0023313_10	UniRef90_A0A367GI93	202.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0023313_10	1507.HMPREF0262_00307	160.0	5.74532e-43	Phage integrase family	N/A
Pfam	UHGV-0023313_10	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0023313_10	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0023313_10	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0023313_10	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0023313_11	phrog_1373	42.1	0.0000000000069	transcriptional regulator	transcription regulation
UniRef90	UHGV-0023313_11	UniRef90_A0A2A7AM70	275.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0023313_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0023313_11	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0023313_15	phrog_888	133.5	1.4e-39	N/A	unknown function
UniRef90	UHGV-0023313_15	UniRef90_A0A6N7TMA2	311.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0023313_15	1415774.U728_165	82.8	4.26e-16	Short C-terminal domain	N/A
Pfam	UHGV-0023313_15	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-0023313_15	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-0023313_15	PF15947,PF14471	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0023313_18	748224.HMPREF9436_01443	305.0	0	vancomycin resistance protein	N/A
COG	UHGV-0023313_18	COG2720	N/A	N/A	Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domains	N/A
PHROG	UHGV-0023313_19	phrog_8	44.7	0.000000000003	transcriptional regulator	transcription regulation
UniRef90	UHGV-0023313_19	UniRef90_A0A2A7AM72	117.0	7.16e-32	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0023313_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0023313_19	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0023313_19	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023313_20	UniRef90_UPI000BEF0F65	80.5	9.4e-19	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0023313_20	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0023313_20	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0023313_25	K17080	75.1	1.5e-22	PHB1; prohibitin 1	N/A
PHROG	UHGV-0023313_25	phrog_200	156.5	0	lipoprotein	other
UniRef90	UHGV-0023313_25	UniRef90_D4KCF4	390.0	0	Membrane protease subunits, stomatin/prohibitin homologs	N/A
eggNOG-mapper	UHGV-0023313_25	657322.FPR_23460	390.0	0	prohibitin homologues	N/A
Pfam	UHGV-0023313_25	PF01145	N/A	N/A	SPFH domain / Band 7 family	Band_7
COG	UHGV-0023313_25	COG0330	N/A	N/A	Regulator of protease activity HflC, stomatin/prohibitin superfamily	N/A
structural_annotation	UHGV-0023313_25	PF01145,MF_01562,NF008181,COG0330	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023313_27	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0023313_28	phrog_72	54.3	0.0000000000000022	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0023313_28	411471.SUBVAR_05829	142.0	1.34001e-40	N/A	N/A
structural_annotation	UHGV-0023313_28	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0023313_30	phrog_7566	84.6	7.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-0023313_30	411471.SUBVAR_05830	103.0	2.49e-27	N/A	N/A
KOfam	UHGV-0023313_31	K03111	146.6	2.39622e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0023313_31	phrog_44	146.7	1.20512e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023313_31	UniRef90_A0A2A7B6R5	260.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0023313_31	718252.FP2_05080	213.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0023313_31	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0023313_31	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0023313_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0023313_31	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0023313_31	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0023313_32	phrog_6969	63.2	3.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-0023313_32	1232446.BAIE02000002_gene816	70.9	0.0000000000133	N/A	N/A
Pfam	UHGV-0023313_32	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
structural_annotation	UHGV-0023313_32	PF04182,MF_01819,TIGR04176,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0023313_33	K03496	211.5	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0023313_33	phrog_164	153.9	1.4013e-45	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023313_33	UniRef90_A0A2A7B6H3	498.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0023313_33	411471.SUBVAR_05839	223.0	0	AAA domain	N/A
Pfam	UHGV-0023313_33	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0023313_33	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0023313_33	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-0023313_34	phrog_16725	51.6	0.000000000000012	N/A	unknown function
KOfam	UHGV-0023313_35	K03497	76.6	4.5e-22	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0023313_35	phrog_4715	106.3	2.4e-31	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023313_35	UniRef90_A0A2A7AMC5	401.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0023313_35	411471.SUBVAR_05842	174.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0023313_35	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0023313_35	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0023313_35	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0023313_36	phrog_14105	387.9	0	N/A	unknown function
UniRef90	UHGV-0023313_36	UniRef90_U2BMS0	241.0	0	Pentapeptide repeat protein	N/A
eggNOG-mapper	UHGV-0023313_36	742740.HMPREF9474_02379	154.0	1.30321e-43	dextransucrase activity	N/A
Pfam	UHGV-0023313_36	PF01469	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide_2
COG	UHGV-0023313_36	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
structural_annotation	UHGV-0023313_37	PF04545	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0023313_40	665956.HMPREF1032_00120	81.6	4.81e-20	N/A	N/A
structural_annotation	UHGV-0023313_40	PF01402,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-0023313_42	K07741	85.0	1.9e-24	antB; anti-repressor protein	N/A
PHROG	UHGV-0023313_42	phrog_130	229.0	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0023313_42	UniRef90_A0A3E2XCY2	317.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0023313_42	1289596.M1PKL6_9CAUD	255.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0023313_42	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0023313_42	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-0023313_42	PF02498,PF03374,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0023313_43	phrog_119	59.0	8e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023313_43	UniRef90_A0A2A7AM49	223.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0023313_43	610130.Closa_0739	110.0	5.45e-30	HNH nucleases	N/A
Pfam	UHGV-0023313_43	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0023313_43	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0023313_44	phrog_13845	57.1	2.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-0023313_44	508419.F8J158_9CAUD	66.2	0.00000000000226	N/A	N/A
structural_annotation	UHGV-0023313_44	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0023313_45	phrog_9	244.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0023313_45	UniRef90_A0A2A7ALT4	1003.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0023313_45	610130.Closa_0741	613.0	0	Phage Terminase	N/A
Pfam	UHGV-0023313_45	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0023313_45	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0023313_45	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0023313_46	phrog_12	125.6	2.3e-37	portal protein	head and packaging
UniRef90	UHGV-0023313_46	UniRef90_A0A2A7B6S8	669.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0023313_46	349161.Dred_2606	290.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0023313_46	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0023313_46	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0023313_46	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0023313_46	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0023313_47	K01358	101.8	9.2e-30	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0023313_47	phrog_94	140.0	2.4e-41	head maturation protease	head and packaging
UniRef90	UHGV-0023313_47	UniRef90_UPI001C10F40E	166.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0023313_47	1232452.BAIB02000007_gene1626	150.0	5.13996e-42	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0023313_47	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0023313_47	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0023313_47	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0023313_48	phrog_10	138.6	6.29996e-41	major head protein	head and packaging
UniRef90	UHGV-0023313_48	UniRef90_A0A2A7B712	868.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0023313_48	1235792.C808_00086	469.0	0	Phage capsid family	N/A
Pfam	UHGV-0023313_48	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0023313_48	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0023313_48	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0023313_48	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0023313_48	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0023313_49	phrog_749	59.2	5.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0023313_49	1235792.C808_00087	83.2	2.44e-19	N/A	N/A
PHROG	UHGV-0023313_50	phrog_19734	95.5	4.4e-28	N/A	unknown function
eggNOG-mapper	UHGV-0023313_50	349161.Dred_2602	79.0	4.07e-17	N/A	N/A
structural_annotation	UHGV-0023313_50	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0023313_51	999413.HMPREF1094_02005	82.8	3.65e-19	N/A	N/A
structural_annotation	UHGV-0023313_51	PF05657,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023313_52	UniRef90_A0A1C6FG30	131.0	7.31e-36	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0023313_52	1235798.C817_04589	112.0	2.52e-29	N/A	N/A
structural_annotation	UHGV-0023313_52	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0023313_53	phrog_88	97.9	1e-28	major tail protein	tail
UniRef90	UHGV-0023313_53	UniRef90_UPI0018771F27	127.0	3.66e-33	phage tail protein	N/A
eggNOG-mapper	UHGV-0023313_53	349161.Dred_2600	62.4	0.00000000552	N/A	N/A
NCBIFam	UHGV-0023313_53	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0023313_53	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0023313_56	phrog_9959	92.7	2.2e-27	tail length tape measure protein	tail
UniRef90	UHGV-0023313_56	UniRef90_A0A2A7ALS3	1192.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0023313_56	596328.HMPREF0578_1241	152.0	9.58e-35	phage tail tape measure protein	N/A
Pfam	UHGV-0023313_56	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0023313_56	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0023313_56	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0023313_56	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0023313_57	phrog_33	79.4	7.7e-23	distal tail protein Dit	tail
UniRef90	UHGV-0023313_57	UniRef90_A0A2X2UUQ3	115.0	1.13e-27	Phage putative tail component	N/A
eggNOG-mapper	UHGV-0023313_57	439292.Bsel_2995	84.0	1.02e-16	tail component	N/A
COG	UHGV-0023313_57	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0023313_57	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0023313_58	phrog_1067	201.8	0	minor head protein	head and packaging
UniRef90	UHGV-0023313_58	UniRef90_A0A2A7AM44	697.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0023313_58	1123263.AUKY01000068_gene489	216.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0023313_58	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0023313_58	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0023313_58	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0023313_58	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
KOfam	UHGV-0023313_61	K07273	168.1	0	acm; lysozyme	N/A
PHROG	UHGV-0023313_61	phrog_291	146.8	1.69557e-43	endolysin	lysis
UniRef90	UHGV-0023313_61	UniRef90_UPI001D0EE7D8	259.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0023313_61	748224.HMPREF9436_00154	254.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0023313_61	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0023313_61	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0023313_61	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0023313_62	phrog_4105	87.3	1.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0023313_62	718252.FP2_06480	159.0	0	N/A	N/A
PHROG	UHGV-0023313_63	phrog_263	84.3	8.8e-25	holin	lysis
UniRef90	UHGV-0023313_63	UniRef90_A0A329UCA4	110.0	3.27e-30	Phage holin	N/A
eggNOG-mapper	UHGV-0023313_63	411483.FAEPRAA2165_00003	105.0	5.26e-29	SPP1 phage holin	N/A
Pfam	UHGV-0023313_63	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0023313_63	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0023313_63	PF04688,TIGR01592	N/A	N/A	N/A	N/A
PHROG	UHGV-0023313_64	phrog_918	98.6	3.1e-29	N/A	unknown function
UniRef90	UHGV-0023313_64	UniRef90_UPI000EC62F11	172.0	0	N/A	N/A
eggNOG-mapper	UHGV-0023313_64	411902.CLOBOL_05677	140.0	2.34998e-42	N/A	N/A
Pfam	UHGV-0023313_64	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0023313_64	PF19791	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0023313	Yes	41,096	51	100	1
UHGV-0024927	No	21,060	50	53	1