vOTU vOTU-043477

vOTU: vOTU-043477

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-043477
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia
Taxonomy (UHGV)	vFAM-00098 → vSUBFAM-06328 → vGENUS-15731 → vSUBGEN-27685 → vOTU-043477
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → UMGS363 → UMGS363 sp900541495
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0023807
Biosample ID	SAMEA4766172
Genome length (bp)	33,137 bps
CheckV completeness	100.00% (Complete)
CDS count	54
CDS density	94.81%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → UMGS363 → UMGS363 sp900541495	Total connections	11	Host agreement	72.73
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0023807_1	phrog_5073	47.5	0.00000000000017	tail fiber protein	tail
Pfam	UHGV-0023807_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0023807_2	phrog_13879	98.8	1.9e-30	N/A	unknown function
structural_annotation	UHGV-0023807_2	PF05113,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0023807_3	phrog_1194	43.0	0.0000000000066	N/A	unknown function
structural_annotation	UHGV-0023807_3	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0023807_4	phrog_27166	40.3	0.000000000023	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0023807_4	1236497.BAJQ01000020_gene1850	202.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0023807_4	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0023807_5	phrog_2066	42.2	0.000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0023807_5	1499683.CCFF01000017_gene2924	65.5	0.00000000000398	N/A	N/A
UniRef90	UHGV-0023807_6	UniRef90_UPI0005AA54D3	70.5	0.000000000000159	N/A	N/A
eggNOG-mapper	UHGV-0023807_6	1499683.CCFF01000017_gene2925	70.5	0.0000000000000266	N/A	N/A
Pfam	UHGV-0023807_6	PF19591	N/A	N/A	N/A	DUF6096
structural_annotation	UHGV-0023807_6	PF19591,TIGR01674	N/A	N/A	N/A	N/A
PHROG	UHGV-0023807_7	phrog_158	71.2	1.9e-20	major tail protein	tail
UniRef90	UHGV-0023807_7	UniRef90_A0A1M6MXK1	123.0	1.54e-33	Phage tail tube protein, TTP	N/A
eggNOG-mapper	UHGV-0023807_7	1209989.TepiRe1_1157	105.0	5.02e-27	Phage tail tube protein, TTP	N/A
Pfam	UHGV-0023807_7	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0023807_7	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0023807_9	phrog_5	84.5	1.5e-24	tail completion or Neck1 protein	connector
UniRef90	UHGV-0023807_9	UniRef90_UPI0006C21968	134.0	1.03e-37	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0023807_9	1540257.JQMW01000009_gene3375	129.0	1.94e-36	N/A	N/A
Pfam	UHGV-0023807_9	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0023807_9	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0023807_9	PF05069,TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0023807_10	1499683.CCFF01000017_gene2929	55.8	0.00000000775	N/A	N/A
structural_annotation	UHGV-0023807_10	PF12206,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0023807_11	phrog_132	62.2	7.4e-18	head-tail adaptor	connector
UniRef90	UHGV-0023807_11	UniRef90_UPI00096DC273	71.2	0.0000000000000409	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0023807_11	1540257.JQMW01000009_gene3373	68.9	0.0000000000000527	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0023807_11	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0023807_11	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0023807_12	phrog_422	189.4	0	major head protein	head and packaging
UniRef90	UHGV-0023807_12	UniRef90_R6RKD0	449.0	0	Gp7	N/A
eggNOG-mapper	UHGV-0023807_12	1430331.EP10_10365	280.0	0	N/A	N/A
structural_annotation	UHGV-0023807_12	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0023807_13	phrog_172	149.6	1.54143e-44	head scaffolding protein	head and packaging
UniRef90	UHGV-0023807_13	UniRef90_UPI0012E1D36F	146.0	1.65e-40	N/A	N/A
eggNOG-mapper	UHGV-0023807_13	1280689.AUJC01000003_gene966	147.0	1.34006e-41	N/A	N/A
Pfam	UHGV-0023807_13	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0023807_13	PF14265	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0023807_14	1423758.BN55_08465	59.7	0.0000000000929	N/A	N/A
structural_annotation	UHGV-0023807_14	PF10827	N/A	N/A	N/A	N/A
PHROG	UHGV-0023807_15	phrog_34144	72.5	4.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0023807_15	1118057.CAGX01000020_gene1617	65.1	0.000000000000138	N/A	N/A
PHROG	UHGV-0023807_16	phrog_115	179.8	0	minor head protein	head and packaging
UniRef90	UHGV-0023807_16	UniRef90_UPI0002F591B7	161.0	1.81006e-41	minor capsid protein	N/A
eggNOG-mapper	UHGV-0023807_16	1118057.CAGX01000020_gene1618	161.0	3.03942e-42	Phage Mu protein F like protein	N/A
Pfam	UHGV-0023807_16	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0023807_16	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0023807_16	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023807_16	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0023807_17	phrog_64	436.2	0	portal protein	head and packaging
UniRef90	UHGV-0023807_17	UniRef90_A0A1W1X006	312.0	0	Phage portal protein, SPP1 family	N/A
eggNOG-mapper	UHGV-0023807_17	445972.ANACOL_00534	295.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0023807_17	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0023807_17	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0023807_17	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0023807_18	K06909	124.7	9.6e-37	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0023807_18	phrog_2	128.7	7.6e-38	terminase large subunit	head and packaging
UniRef90	UHGV-0023807_18	UniRef90_A0A1B9AU50	567.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0023807_18	1196031.ALEG01000039_gene1286	541.0	0	Terminase-like family	N/A
Pfam	UHGV-0023807_18	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0023807_18	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0023807_18	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0023807_18	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0023807_20	cluster_86620	33.9	0.00000274	NA	N/A
UniRef90	UHGV-0023807_21	UniRef90_A0A412ULX9	75.9	5.3e-17	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0023807_21	679200.HMPREF9333_02253	51.6	0.0000000332	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0023807_21	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0023807_21	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0023807_21	PF01381,NF040522,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-0023807_22	phrog_36	53.5	0.0000000000000039	transcriptional regulator	transcription regulation
UniRef90	UHGV-0023807_22	UniRef90_A0A174ZYK6	93.2	5.43e-21	Phage transcriptional regulator, RinA family	N/A
eggNOG-mapper	UHGV-0023807_22	1304880.JAGB01000002_gene2225	92.4	3.81e-21	N/A	N/A
structural_annotation	UHGV-0023807_26	PF15188	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023807_28	PF18300,MF_01549,NF007981	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023807_31	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
PHROG	UHGV-0023807_35	phrog_8841	477.4	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023807_35	UniRef90_UPI001031DFED	627.0	0	N/A	N/A
eggNOG-mapper	UHGV-0023807_35	742738.HMPREF9460_02495	487.0	0	N/A	N/A
Pfam	UHGV-0023807_35	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0023807_35	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0023807_35	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023807_35	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0023807_36	K02316	64.4	1.9e-18	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0023807_36	phrog_11992	129.1	3.2e-38	N/A	unknown function
UniRef90	UHGV-0023807_36	UniRef90_A0A6N3FCY9	107.0	5.11e-26	DNA primase	N/A
eggNOG-mapper	UHGV-0023807_36	1007096.BAGW01000023_gene150	96.7	5.04e-23	CHC2 zinc finger	N/A
PADLOC	UHGV-0023807_36	drt-cluster192	60.0	5.5e-17	DRT	DRT
Pfam	UHGV-0023807_36	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0023807_36	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0023807_36	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-0023807_37	phrog_3490	114.6	7.9e-34	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023807_37	UniRef90_UPI000F530A03	186.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0023807_37	861454.HMPREF9099_00350	159.0	0	ERCC4 domain	N/A
Pfam	UHGV-0023807_37	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0023807_37	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0023807_38	K03111	118.0	1.3e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0023807_38	phrog_44	125.9	3.5e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023807_38	UniRef90_R5A082	114.0	7.41e-30	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0023807_38	428125.CLOLEP_03546	105.0	4.55e-27	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0023807_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0023807_38	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0023807_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0023807_38	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0023807_38	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0023807_39	phrog_1227	235.8	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023807_39	UniRef90_UPI00041F978E	335.0	0	PD-(D/E)XK nuclease-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0023807_39	1120998.AUFC01000030_gene2216	335.0	0	N/A	N/A
Pfam	UHGV-0023807_39	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0023807_39	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0023807_39	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
KOfam	UHGV-0023807_40	K03546	42.7	0.0000000000017	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0023807_40	phrog_1499	275.2	0	N/A	unknown function
UniRef90	UHGV-0023807_40	UniRef90_A0A1C6FNE5	612.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0023807_40	1120998.AUFC01000030_gene2215	603.0	0	DNA recombination	N/A
Pfam	UHGV-0023807_40	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0023807_40	COG0497	N/A	N/A	DNA repair ATPase RecN	N/A
structural_annotation	UHGV-0023807_40	PF11398,MF_00365,NF008121,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0023807_41	phrog_21613	59.6	4.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0023807_41	1120998.AUFC01000030_gene2214	98.2	2.28e-23	N/A	N/A
KOfam	UHGV-0023807_45	K07729	40.7	0.000000000044	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0023807_45	phrog_8	42.6	0.000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0023807_45	UniRef90_UPI00166586B2	54.7	0.0000000559	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0023807_45	1392502.JNIO01000002_gene278	46.2	0.00000644	sequence-specific DNA binding	N/A
Pfam	UHGV-0023807_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0023807_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0023807_45	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0023807_46	phrog_8	51.1	0.00000000000003	transcriptional regulator	transcription regulation
UniRef90	UHGV-0023807_46	UniRef90_A0A7X5CYW5	64.7	0.000000000611	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0023807_46	226185.EF_2040	62.4	0.000000000383	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0023807_46	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0023807_46	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-0023807_47	UniRef90_R5Y3P9	83.2	5.65e-16	Peptidase_M78 domain-containing protein	N/A
Pfam	UHGV-0023807_47	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0023807_47	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
structural_annotation	UHGV-0023807_47	PF13058,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0023807_48	phrog_2841	53.8	0.0000000000000031	minor head protein	head and packaging
UniRef90	UHGV-0023807_48	UniRef90_UPI00189F8047	92.0	3.06e-17	minor capsid protein	N/A
Pfam	UHGV-0023807_48	PF02037	N/A	N/A	SAP domain	SAP
Pfam	UHGV-0023807_48	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0023807_48	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0023807_48	COG2369	N/A	N/A	N/A	N/A
KOfam	UHGV-0023807_49	K06400	401.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0023807_49	phrog_95	396.3	0	integrase	integration and excision
UniRef90	UHGV-0023807_49	UniRef90_A0A3A6DSL9	442.0	0	Recombinase family protein (Fragment)	N/A
eggNOG-mapper	UHGV-0023807_49	903814.ELI_1010	430.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0023807_49	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0023807_49	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0023807_49	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0023807_49	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0023807_49	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0023807_50	K17733	133.0	2.2e-39	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0023807_50	phrog_6523	133.6	1.8e-39	endolysin	lysis
UniRef90	UHGV-0023807_50	UniRef90_A0A0X8VE59	177.0	0	Peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	N/A
eggNOG-mapper	UHGV-0023807_50	642492.Clole_2733	172.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-0023807_50	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-0023807_50	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-0023807_50	PF02557,MF_01924,NF000380,COG1876	N/A	N/A	N/A	N/A
PHROG	UHGV-0023807_51	phrog_443	51.5	0.000000000000027	holin	lysis
UniRef90	UHGV-0023807_51	UniRef90_R6R2Q3	94.7	2.26e-24	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0023807_51	1235797.C816_04172	88.2	1.53e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0023807_51	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0023807_51	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0023807_52	phrog_4105	81.2	9.7e-24	N/A	unknown function
eggNOG-mapper	UHGV-0023807_52	610130.Closa_0762	97.4	7.15e-25	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0023807	Yes	33,137	39	100	1