vOTU vOTU-043505

vOTU: vOTU-043505

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-043505
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00513 → vGENUS-01489 → vSUBGEN-46575 → vOTU-043505
Host lineage
Host range breadth
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0024009
Biosample ID	N/A
Genome length (bp)	47,716 bps
CheckV completeness	100.00% (Complete)
CDS count	81
CDS density	92.67%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0024009_1	phrog_6918	58.2	1.2e-16	holin	lysis
UniRef90	UHGV-0024009_1	UniRef90_G9YP36	60.1	0.00000000169	Phage holin, LL-H family	N/A
eggNOG-mapper	UHGV-0024009_1	1203606.HMPREF1526_01929	56.2	0.00000000765	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0024009_1	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0024009_1	PF09682,TIGR01673	N/A	N/A	N/A	N/A
KOfam	UHGV-0024009_2	K07273	153.7	1.4013e-45	acm; lysozyme	N/A
PHROG	UHGV-0024009_2	phrog_291	126.6	2.7e-37	endolysin	lysis
UniRef90	UHGV-0024009_2	UniRef90_A0A1C5WYX1	91.7	7.24e-19	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0024009_2	877420.ATVW01000046_gene2306	92.4	6.86e-19	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0024009_2	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0024009_2	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0024009_2	PF01183,TIGR00612,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0024009_4	phrog_35892	117.3	6.7e-35	N/A	unknown function
UniRef90	UHGV-0024009_4	UniRef90_UPI001F37D978	153.0	1e-38	leucine-rich repeat domain-containing protein	N/A
eggNOG-mapper	UHGV-0024009_4	471875.RUMLAC_02240	126.0	2.56e-29	dockerin type I repeat-containing domain protein	N/A
Pfam	UHGV-0024009_4	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
COG	UHGV-0024009_4	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024009_4	PF13306,NF041351	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024009_7	PF10651,NF033814,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-0024009_8	phrog_4105	74.7	1.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0024009_8	397288.C806_00056	86.3	1.91e-20	N/A	N/A
PHROG	UHGV-0024009_9	phrog_18593	123.9	1.1e-36	N/A	unknown function
UniRef90	UHGV-0024009_9	UniRef90_A0A2Y9CAD1	163.0	0	Carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0024009_9	411460.RUMTOR_02099	140.0	1.58e-39	N/A	N/A
Pfam	UHGV-0024009_9	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
PHROG	UHGV-0024009_12	phrog_18725	40.7	0.000000000031	N/A	unknown function
PHROG	UHGV-0024009_13	phrog_13879	198.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0024009_13	411902.CLOBOL_00124	311.0	0	N/A	N/A
structural_annotation	UHGV-0024009_13	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0024009_14	phrog_1194	68.0	1.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0024009_14	411902.CLOBOL_00125	100.0	1.61e-25	N/A	N/A
structural_annotation	UHGV-0024009_14	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0024009_15	phrog_1535	121.8	2.29953e-42	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0024009_15	1121866.AUGK01000003_gene1437	198.0	0	phage tail tape measure protein	N/A
COG	UHGV-0024009_15	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0024009_18	phrog_158	60.2	4.7e-17	major tail protein	tail
eggNOG-mapper	UHGV-0024009_18	1121333.JMLH01000047_gene1013	119.0	3.48e-32	N/A	N/A
structural_annotation	UHGV-0024009_18	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024009_19	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024009_21	1121866.AUGK01000003_gene1432	71.6	0.0000000000000255	N/A	N/A
UniRef90	UHGV-0024009_22	UniRef90_R6N215	73.9	0.00000000000000683	Phage QLRG family putative DNA packaging	N/A
Pfam	UHGV-0024009_22	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0024009_22	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0024009_23	phrog_247	236.9	0	major head protein	head and packaging
UniRef90	UHGV-0024009_23	UniRef90_UPI000A1C9CC1	433.0	0	coat protein	N/A
eggNOG-mapper	UHGV-0024009_23	903814.ELI_3208	442.0	0	N/A	N/A
structural_annotation	UHGV-0024009_23	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024009_24	UniRef90_A0A7C7EK05	68.6	0.0000000000508	N/A	N/A
structural_annotation	UHGV-0024009_24	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0024009_25	phrog_64	167.0	0	portal protein	head and packaging
UniRef90	UHGV-0024009_25	UniRef90_A0A7X9GQD9	379.0	0	Phage portal protein (Fragment)	N/A
eggNOG-mapper	UHGV-0024009_25	1121866.AUGK01000003_gene1429	339.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0024009_25	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0024009_25	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0024009_26	phrog_38	181.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0024009_26	UniRef90_UPI000419A6BC	379.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0024009_26	1232453.BAIF02000058_gene1623	381.0	0	TIGRFAM Phage	N/A
COG	UHGV-0024009_26	COG5410	N/A	N/A	N/A	N/A
KOfam	UHGV-0024009_27	K06400	218.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0024009_27	phrog_95	207.0	0	integrase	integration and excision
UniRef90	UHGV-0024009_27	UniRef90_A0A1C6EX67	330.0	0	Transposon Tn3 resolvase	N/A
eggNOG-mapper	UHGV-0024009_27	697329.Rumal_3466	306.0	0	resolvase	N/A
Pfam	UHGV-0024009_27	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0024009_27	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0024009_27	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0024009_27	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024009_33	UniRef90_UPI001D07B715	92.4	1.84e-19	DNA-packaging protein	N/A
structural_annotation	UHGV-0024009_33	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0024009_34	phrog_8841	453.4	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024009_34	UniRef90_UPI0016512652	470.0	0	N/A	N/A
eggNOG-mapper	UHGV-0024009_34	742738.HMPREF9460_02495	392.0	0	N/A	N/A
Pfam	UHGV-0024009_34	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0024009_34	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0024009_34	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024009_34	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0024009_35	K02316	74.4	1.8e-21	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0024009_35	phrog_11992	92.1	8.2e-27	N/A	unknown function
UniRef90	UHGV-0024009_35	UniRef90_UPI00102F4626	95.9	1.19e-21	CHC2 zinc finger domain-containing protein	N/A
eggNOG-mapper	UHGV-0024009_35	411902.CLOBOL_04301	82.8	5.22e-17	CHC2 zinc finger	N/A
PADLOC	UHGV-0024009_35	drt-cluster192	47.8	0.00000000000029	DRT	DRT
Pfam	UHGV-0024009_35	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0024009_35	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0024009_35	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-0024009_36	phrog_3490	120.4	1.4e-35	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024009_36	UniRef90_A0A1C6FNL5	157.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0024009_36	357809.Cphy_2986	143.0	1.73999e-41	N/A	N/A
Pfam	UHGV-0024009_36	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0024009_36	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-0024009_37	phrog_1233	70.3	3e-20	N/A	unknown function
UniRef90	UHGV-0024009_37	UniRef90_UPI0013ED6412	62.8	0.0000000000933	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0024009_37	218284.CCDN010000001_gene857	61.2	0.0000000000584	N/A	N/A
structural_annotation	UHGV-0024009_37	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0024009_38	K03111	118.2	1.2e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0024009_38	phrog_44	120.2	1.9e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024009_38	UniRef90_A0A2U1BEJ1	135.0	3.16e-38	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0024009_38	748224.HMPREF9436_00638	107.0	1.9e-27	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0024009_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0024009_38	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0024009_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0024009_38	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0024009_38	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0024009_39	phrog_561	147.0	1.4013e-43	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024009_39	UniRef90_UPI001EE8E2AA	220.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0024009_39	887325.HMPREF0381_0098	190.0	0	N/A	N/A
Pfam	UHGV-0024009_39	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-0024009_39	PF03837,TIGR01913	N/A	N/A	N/A	N/A
KOfam	UHGV-0024009_40	K10906	80.8	6.8e-29	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	N/A
PHROG	UHGV-0024009_40	phrog_412	233.0	0	exonuclease VIII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024009_40	UniRef90_A0A1C6GFL6	234.0	0	Exodeoxyribonuclease 8	N/A
eggNOG-mapper	UHGV-0024009_40	1454004.AW11_02382	188.0	0	N/A	N/A
Pfam	UHGV-0024009_40	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0024009_40	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0024009_40	PF12684,MF_03030,TIGR01896,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0024009_42	phrog_774	55.6	0.000000000000001	N/A	unknown function
eggNOG-mapper	UHGV-0024009_42	397290.C810_05225	65.9	0.00000000000713	N/A	N/A
PHROG	UHGV-0024009_49	phrog_1374	58.6	7.9e-17	N/A	unknown function
UniRef90	UHGV-0024009_49	UniRef90_A0A8F3EDV3	63.5	0.00000000000522	Membrane protein	N/A
eggNOG-mapper	UHGV-0024009_49	445972.ANACOL_03351	59.7	0.0000000000411	N/A	N/A
structural_annotation	UHGV-0024009_49	TIGR04438	N/A	N/A	N/A	N/A
PHROG	UHGV-0024009_51	phrog_7704	43.3	0.0000000000063	N/A	unknown function
UniRef90	UHGV-0024009_51	UniRef90_A0A3A6ECV8	118.0	3.49e-33	N/A	N/A
eggNOG-mapper	UHGV-0024009_51	411470.RUMGNA_00214	79.3	2.36e-17	N/A	N/A
Pfam	UHGV-0024009_51	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0024009_51	PF04448	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024009_53	COG3460	N/A	N/A	N/A	N/A
PHROG	UHGV-0024009_54	phrog_2245	43.6	0.0000000000053	nucleoside triphosphate pyrophosphohydrolase	other
structural_annotation	UHGV-0024009_54	PF11998,COG5420	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024009_56	PF10694	N/A	N/A	N/A	N/A
PHROG	UHGV-0024009_58	phrog_24490	52.4	0.0000000000000056	N/A	unknown function
eggNOG-mapper	UHGV-0024009_58	1232428.CAVO010000067_gene435	59.7	0.000000000427	N/A	N/A
Pfam	UHGV-0024009_59	PF18912	N/A	N/A	Double zinc ribbon domain	DZR_2
PHROG	UHGV-0024009_62	phrog_323	42.9	4.4e-16	endonuclease	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0024009_62	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
Pfam	UHGV-0024009_62	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
Pfam	UHGV-0024009_62	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
dbAPIS	UHGV-0024009_62	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
COG	UHGV-0024009_69	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0024009_69	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
Pfam	UHGV-0024009_72	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
KOfam	UHGV-0024009_73	K14059	189.0	0	int; integrase	N/A
PHROG	UHGV-0024009_73	phrog_1	161.1	0	integrase	integration and excision
UniRef90	UHGV-0024009_73	UniRef90_UPI001EDE32BF	243.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0024009_73	1226322.HMPREF1545_00144	208.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0024009_73	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0024009_73	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0024009_73	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024009_74	UniRef90_A0A1Q9JGI6	130.0	4.67e-36	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0024009_74	1033733.CAEK01000007_gene1628	112.0	5.41e-30	N/A	N/A
structural_annotation	UHGV-0024009_74	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024009_78	PF02255,TIGR00823,COG1447	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0024009	Yes	47,716	55	100	1